#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 16, 2024; 1:25 GMT

TreeBASE (cc) 1994-2008

Study reference:
Derelle R., López-garcía P., Timpano H., & Moreira D. 2016. A phylogenomic framework
to study the diversity and evolution of stramenopiles. Molecular Biology and
Evolution, 33(11): 2890-2898.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S18548]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=45;
        TAXLABELS
            Aplanochytrium_kerguelense
            Aplanochytrium_stocchinoi
            Aurantiochytrium_limacinum
            Aureococcus_anophagefferens
            Bicosoecid_sp
            Bigelowiella_natans
            Blastocystis_ST4
            Blastocystis_hominis
            Bolidomonas_pacifica
            Bolidomonas_sp
            Cafeteria_roenbergensis
            Cafeteria_sp
            Chattonella_subsalsa
            Chromera_velia
            Chrysocystis_fragilis
            Chrysoreinhardia_sp
            Dictyocha_speculum
            Dinobryon_sp
            Ectocarpus_siliculosus
            Fibrocapsa_japonica
            Florenciella_parvula
            Heterosigma_akashiwo
            Incisomonas_marina
            MAST4
            Mallomonas_Sp
            Minutocellus_polymorphus
            Ochromonas_sp
            Oxytricha_trifallax
            Pelagomonas_calceolata
            Perkinsus_marinus
            Phytophthora_infestans
            Protocruzia_adherens
            Pseudopedinella_elastica
            Pteridomonas_danica
            Pythium_ultimum
            Rhizochromulina_marina
            Rhizosolenia_setigera
            Saprolegnia_parasitica
            Schizochytrium_aggregatum
            Synchroma_pusillum
            Thalassiosira_pseudonana
            Thraustochytridae_QPX
            Thraustochytrium_sp
            Vaucheria_litorea
            Vitrella_brassicaformis
            ;
END;

BEGIN TREES;
      TITLE 'Bayesian CAT-GTR consensus tree';
      LINK TAXA = Taxa;
      TREE Imported_tree_0 = [&R] ((Chromera_velia:0.514684,Vitrella_brassicaformis:0.378322)1:0.069945,(Perkinsus_marinus:0.862445,((Oxytricha_trifallax:1.02776,Protocruzia_adherens:0.745514)1:0.341755,(Bigelowiella_natans:1.1138,((((Bicosoecid_sp:0.443991,Cafeteria_roenbergensis:0.92722)1:0.168435,(Incisomonas_marina:0.851903,(Cafeteria_sp:0.520253,(Blastocystis_hominis:0.186813,Blastocystis_ST4:0.142101)1:1.1528)1:0.028515)1:0.045586)1:0.03974,(MAST4:0.796965,((Aplanochytrium_kerguelense:0.106183,Aplanochytrium_stocchinoi:0.068171)1:0.242719,(Thraustochytridae_QPX:0.188969,(Aurantiochytrium_limacinum:0.300417,(Schizochytrium_aggregatum:0.145503,Thraustochytrium_sp:0.210982)1:0.094124)1:0.03161)1:0.170089)1:0.297789)1:0.075786)1:0.023541,((Saprolegnia_parasitica:0.177,(Phytophthora_infestans:0.088764,Pythium_ultimum:0.057111)1:0.09211)1:0.317165,(((Synchroma_pusillum:0.497967,(Mallomonas_Sp:0.241271,(Dinobryon_sp:0.169296,Ochromonas_sp:0.17665)1:0.112713)1:0.185974)1:0.125895,((Ectocarpus_siliculosus:0.234125,Vaucheria_litorea:0.389173)1:0.11559,(Fibrocapsa_japonica:0.232399,(Chattonella_subsalsa:0.081599,Heterosigma_akashiwo:0.14402)1:0.144769)1:0.101361)1:0.035639)1:0.017113,(((Bolidomonas_pacifica:0.149125,Bolidomonas_sp:0.150455)1:0.195375,(Rhizosolenia_setigera:0.203628,(Minutocellus_polymorphus:0.141111,Thalassiosira_pseudonana:0.177608)1:0.037221)1:0.160489)1:0.272168,(((Aureococcus_anophagefferens:0.100702,Pelagomonas_calceolata:0.178882)1:0.082119,(Chrysocystis_fragilis:0.181297,Chrysoreinhardia_sp:0.183436)1:0.078099)1:0.324355,((Dictyocha_speculum:0.202283,Florenciella_parvula:0.15977)1:0.040508,(Rhizochromulina_marina:0.184256,(Pseudopedinella_elastica:0.142003,Pteridomonas_danica:0.157622)1:0.111611)1:0.052709)1:0.176177)1:0.070064)1:0.027612)1:0.132022)1:0.096116)1:0.160397)1:0.211077)1:0.356394):0.069945);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr105504]


END;