#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 18, 2024; 23:01 GMT TreeBASE (cc) 1994-2008 Study reference: Coppard S.E., & Lessios H.A. 2017. Phylogeography of the sand dollar genus Encope: implications regarding the Central American Isthmus and rates of molecular evolution. Scientific Reports, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S21395] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=121; TAXLABELS Encope_aberrans_EAFP1 Encope_aberrans_EAFP2 Encope_aberrans_EAFP3 Encope_aberrans_EAFP4 Encope_aberrans_EAFP5 Encope_aberrans_EAFP6 Encope_aberrans_EAGM1 Encope_aberrans_EAGM2 Encope_aberrans_EAGM3 Encope_borealis_EBPPM1 Encope_borealis_EBPPM2 Encope_borealis_EBPPM3 Encope_borealis_EBPPM4 Encope_borealis_EBPPM5 Encope_borealis_EBPPM6 Encope_californica_ECLP1 Encope_californica_ECLP2 Encope_californica_ECLP3 Encope_californica_ECLP4 'Encope californica ECLP5_6' Encope_cocosi_ECOCR1 Encope_ecuadorensis_EESEE1 'Encope emarginata EEPBB1_4' 'Encope emarginata EEPBB2_3_5_8' Encope_emarginata_EEPBB6 Encope_emarginata_EEPBB7 Encope_emarginata_EEPLP1 Encope_emarginata_EEPLP4 'Encope emarginata EERB1_EEPLP2' Encope_emarginata_EERB2 'Encope emarginata EESB1_EEPLP3' 'Encope emarginata EESB2_3' Encope_emarginata_EESMC5 Encope_fragilis_EFCR1 Encope_fragilis_EFCR2 Encope_fragilis_EFCR3 Encope_fragilis_EFCR4 Encope_galapagensis_EGIF1 Encope_galapagensis_EGIF2 'Encope galapagensis EGII1_2' Encope_galapagensis_EGISFl1 Encope_galapagensis_EGISFl2 Encope_galapagensis_EGISFl3 'Encope grandis EGBA1_4' Encope_grandis_EGBA2 Encope_grandis_EGBA3 Encope_insularis_EIIS1 Encope_insularis_EIIS2 Encope_insularis_EIIS3 Encope_irregularis_EIRH1 Encope_laevis_ELNH1 Encope_michelini_EMFP1 Encope_michelini_EMFP2 Encope_michelini_EMFP3 Encope_michelini_EMFP4 Encope_michelini_EMFP5 'Encope michelini EMMKF1_4' Encope_michelini_EMMKF2 'Encope michelini EMMKF3_5' Encope_michelini_EMSLF1 Encope_michelini_EMSLF2 Encope_michelini_EMSLF3 'Encope micropora EMAZ1_4_EMPV1 ' 'Encope micropora EMAZ3_5_EMVP3' Encope_micropora_EMCR1 'Encope micropora EMPV4_EMAZ2' 'Encope micropora EMRP1_5' 'Encope micropora EMRP2_EMSJ2_7' 'Encope micropora EMRP2_EMVP2' 'Encope micropora EMRP3_EMSJ8' 'Encope micropora EMSJ3_EMRP4 ' 'Encope micropora EMSJ4_ETRP1_3' 'Encope micropora EMSJ5_EMST6_8' 'Encope micropora EMST1_4_7' 'Encope micropora EMST3_5_EMSJ3 ' Encope_micropora_Esp1 Encope_micropora_Esp2 Encope_micropora_Esp3 'Encope micropora Esp4_6' Encope_micropora_Esp5 Encope_oblonga_EEV1 Encope_oblonga_EEV2 'Encope perspectiva EPCR1_3' Encope_perspectiva_EPCR2 Encope_perspectiva_EPLPM1 Encope_perspectiva_EPSJP1 'Encope subclausa ESPLP1_2' Encope_subclausa_ESPLP3 'Encope tetrapora ETRP2_EMSJ1 ' Encope_valenciennesii_EVM1 'Encope wetmorei EWBM1_3_EWMM3' 'Encope wetmorei EWBM2_EWMM1 ' Encope_wetmorei_EWBM4 'Encope wetmorei EWBM5_7' 'Encope wetmorei EWBM6_8' Encope_wetmorei_EWBPE1 'Encope wetmorei EWBPE2_3' 'Encope wetmorei EWEC1_3' Encope_wetmorei_EWEC2 Encope_wetmorei_EWLLP1 Encope_wetmorei_EWLLP2 Encope_wetmorei_EWLLP3 Encope_wetmorei_EWLLP4 'Encope wetmorei EWLLP5_ELLP1' Encope_wetmorei_EWMM2 Lanthonia_longifissa_LLGP7 Lanthonia_longifissa_LLGP9 Lanthonia_longifissa_LLMM1 Lanthonia_longifissa_LLMM2 Lanthonia_longifissa_LLPCP3 Leodia_seiesperforata_LSP1 Mellita_quinquiesperforata_MQBTP1 Mellita_quinquiesperforata_MQPP1 Mellita_quinquiesperforata_MQPP4 Mellita_quinquiesperforata_MQSBP1 Mellita_quinquiesperforata_MQSBP2 Mellitella_stokesii_MSPVP1 Mellitella_stokesii_MSPVP2 Mellitella_stokesii_MSPVP3 Mellitella_stokesii_MSRP1 Mellitella_stokesii_MSRP2 ; END; BEGIN TREES; TITLE 'Encope concatenated COI, ATPase-6, ATPase-8, 16S and 28S data'; LINK TAXA = Taxa; TREE con_50_majrule = [&R] (Leodia_seiesperforata_LSP1:0.2092299,((Lanthonia_longifissa_LLPCP3:0.154102734,Lanthonia_longifissa_LLGP7:0.315584623,Lanthonia_longifissa_LLGP9:0.3101242724,Lanthonia_longifissa_LLMM1:0.318983113,Lanthonia_longifissa_LLMM2:0.319055994):0.205190094,(Mellitella_stokesii_MSPVP1:0.002104069,Mellitella_stokesii_MSPVP2:0.001712943,Mellitella_stokesii_MSPVP3:0.005029781,Mellitella_stokesii_MSRP2:0.010883054,Mellitella_stokesii_MSRP1:0.005134833):0.54443092,((Mellita_quinquiesperforata_MQPP1:0.002119468,Mellita_quinquiesperforata_MQSBP2:8.855848E-4):0.003893202,Mellita_quinquiesperforata_MQBTP1:0.0078774313,(Mellita_quinquiesperforata_MQPP4:0.002212868,Mellita_quinquiesperforata_MQSBP1:9.043134E-4):0.011750598000000001):0.35685692,(((Encope_aberrans_EAFP3:8.917346E-4,Encope_aberrans_EAFP6:0.003385002,Encope_aberrans_EAFP1:0.005435384,Encope_aberrans_EAFP4:0.009059623000000001,Encope_aberrans_EAFP5:0.0059418827,Encope_aberrans_EAGM2:0.008902519000000001,Encope_aberrans_EAGM3:0.011226329,Encope_aberrans_EAFP2:0.015222726,Encope_aberrans_EAGM1:0.01740954):0.03563407,(Encope_michelini_EMSLF3:8.714428E-4,Encope_michelini_EMFP3:0.005381404,(Encope_michelini_EMSLF1:0.002163202,Encope_michelini_EMSLF2:0.003315236):0.00674283,(Encope_michelini_EMFP1:0.00335153,'Encope michelini EMMKF3_5':0.003620838):0.007963783,(Encope_michelini_EMFP5:0.009879015,(Encope_michelini_EMFP2:8.534486E-4,'Encope michelini EMMKF1_4':0.002036304):0.002180408,(Encope_michelini_EMFP4:8.914911E-4,Encope_michelini_EMMKF2:0.003516624):0.002080026):0.003248229):0.04852854):0.09640387,((('Encope grandis EGBA1_4':0.001242737,Encope_grandis_EGBA2:0.003910932,Encope_grandis_EGBA3:0.005122242):0.06206466,((Encope_galapagensis_EGISFl3:0.008336538000000001,'Encope galapagensis EGII1_2':0.008354777,Encope_galapagensis_EGISFl2:0.008688557999999999,Encope_galapagensis_EGIF1:0.0068564970000000005,(Encope_galapagensis_EGIF2:0.001578049,Encope_galapagensis_EGISFl1:0.001289982):0.0061004990000000005):0.04281716,((Encope_borealis_EBPPM1:8.333867E-4,Encope_borealis_EBPPM2:0.0028730841,Encope_borealis_EBPPM3:0.004210802,Encope_borealis_EBPPM5:0.0031777223,Encope_borealis_EBPPM4:0.006555053,Encope_borealis_EBPPM6:0.006392921):0.03377099,(Encope_emarginata_EEPLP1:0.003925245,('Encope subclausa ESPLP1_2':8.525928E-4,Encope_emarginata_EESMC5:0.003330117):0.004470972,('Encope emarginata EESB2_3':0.001658838,(Encope_emarginata_EERB2:0.005207799,'Encope emarginata EERB1_EEPLP2':0.006854989000000001,'Encope emarginata EESB1_EEPLP3':0.010531684000000001,Encope_subclausa_ESPLP3:0.0109915963,Encope_emarginata_EEPLP4:0.0121195,Encope_oblonga_EEV1:0.0156458735,Encope_valenciennesii_EVM1:0.022119957000000003,Encope_oblonga_EEV2:0.018733434,('Encope emarginata EEPBB2_3_5_8':0.006374301,'Encope emarginata EEPBB1_4':0.004163368,Encope_emarginata_EEPBB6:0.0041888151,Encope_emarginata_EEPBB7:0.004793226):0.021568979):0.01886544):0.0065253229999999995):0.03146101):0.03003327):0.01473105):0.01770099,(((Encope_californica_ECLP1:0.003652113,Encope_californica_ECLP2:0.002896465):0.005463041,Encope_californica_ECLP3:0.006615016,Encope_californica_ECLP4:0.003800713,'Encope californica ECLP5_6':0.0027057748):0.01045257,(('Encope micropora Esp4_6':0.006161253,(Encope_micropora_Esp3:0.003563913,(Encope_micropora_Esp5:0.002022662,(Encope_micropora_Esp1:8.706156E-4,Encope_micropora_Esp2:0.002123282):0.005933239):0.004539774):0.005324447):0.01172187,Encope_wetmorei_EWBM4:0.019971604,Encope_wetmorei_EWMM2:0.015992003,'Encope wetmorei EWBM1_3_EWMM3':0.0135452878,('Encope wetmorei EWEC1_3':0.032272345,Encope_wetmorei_EWEC2:0.011173693):0.011173693,'Encope wetmorei EWBM5_7':0.016790685,'Encope wetmorei EWBM2_EWMM1 ':0.021908756,'Encope wetmorei EWBM6_8':0.019372006,'Encope micropora EMAZ3_5_EMVP3':0.011539938,'Encope micropora EMRP1_5':0.014480119,'Encope micropora EMRP2_EMVP2':0.010387911,'Encope micropora EMSJ3_EMRP4 ':0.013130065,Encope_fragilis_EFCR1:0.009369917,Encope_perspectiva_EPSJP1:0.021235023,'Encope micropora EMSJ5_EMST6_8':0.013775784,Encope_ecuadorensis_EESEE1:0.016007647,(Encope_fragilis_EFCR2:9.448729E-4,Encope_fragilis_EFCR4:0.002302096):0.011314078,(Encope_insularis_EIIS1:9.007572E-4,Encope_insularis_EIIS2:0.004180725,Encope_insularis_EIIS3:0.0041405650000000006):0.011248026,Encope_micropora_EMCR1:0.017616675,'Encope micropora EMRP2_EMSJ2_7':0.014939131999999999,'Encope micropora EMRP3_EMSJ8':0.012416937,'Encope micropora EMST3_5_EMSJ3 ':0.019730768,Encope_fragilis_EFCR3:0.009205568,('Encope micropora EMPV4_EMAZ2':0.011783239000000001,'Encope micropora EMAZ1_4_EMPV1 ':0.006216983,'Encope tetrapora ETRP2_EMSJ1 ':0.009872276,'Encope micropora EMST1_4_7':0.008416036,('Encope micropora EMSJ4_ETRP1_3':0.002034266,Encope_cocosi_ECOCR1:0.003401082):0.00969606):0.010324136,(Encope_perspectiva_EPLPM1:9.625934E-4,Encope_irregularis_EIRH1:0.002195181,Encope_wetmorei_EWBPE1:0.0042146679999999995,'Encope wetmorei EWBPE2_3':0.005571908):0.014415385999999999,'Encope perspectiva EPCR1_3':0.018961643,Encope_perspectiva_EPCR2:0.022200748,Encope_laevis_ELNH1:0.020403515999999997,Encope_wetmorei_EWLLP3:0.026245680999999996,Encope_wetmorei_EWLLP1:0.025751898999999995,Encope_wetmorei_EWLLP2:0.024665857999999995,Encope_wetmorei_EWLLP4:0.021985435999999997,'Encope wetmorei EWLLP5_ELLP1':0.021616710999999997):0.004986744):0.04939095):0.09876826):0.07899101):0.2092299); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr106359] END;