#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 24, 2024; 4:09 GMT TreeBASE (cc) 1994-2008 Study reference: Evans N. 2018. Molecular phylogenetics of swimming crabs (Portunoidea Rafinesque, 1815) supports a revised family-level classification and suggests a single derived origin of symbiotic taxa. PeerJ, 6:e4260: 56. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S21486] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=66; TAXLABELS Bathynectes_longispina_OTU021 Callinectes_ornatus_OTU050 Callinectes_sapidus_OTU051 Cancer_pagurus_OTU001 Caphyra_cf_fulva_OTU093 Caphyra_sp_B_OTU095 Carcinus_maenas_OTU007 Charybdis_annulata_OTU100 Charybdis_feriata_OTU103 Charybdis_hellerii_OTU104 Charybdis_lucifera_OTU108 Charybdis_sagamiensis_OTU112 Cronius_ruber_OTU116 Goniosupradens_acutifrons_OTU118 Goniosupradens_erythrodactylus_OTU119 Goniosupradens_hawaiensis_OTU120 Goniosupradens_obtusifrons_OTU121 Liocarcinus_depurator_OTU024 Liocarcinus_maculatus_OTU026 Lissocarcinus_arkati_OTU122 Lissocarcinus_holothuricola_OTU123 Lissocarcinus_laevis_OTU124 Lissocarcinus_polybiodes_OTU126 Lupocyclus_quinquedentatus_OTU055 Necora_puber_OTU031 Ovalipes_stephensoni_floridanus_OTU017 Portunus_Achelous_gibbesii_OTU060 Portunus_Achelous_spinimanus_OTU065 Portunus_Cycloachelous_granulatus_OTU067 Portunus_Xiphonectes_arabicus_OTU082 Portunus_sanguinolentus_hawaiiensis_OTU078 Portunus_ventralis_OTU081 Raymanninus_schmitti_OTU014 Thalamita_admete_OTU127 Thalamita_aff_admete_OTU128 Thalamita_bevisi_OTU130 Thalamita_bouvieri_OTU131 Thalamita_cf_gatavakensis_sp_A_OTU138 Thalamita_cf_gatavakensis_sp_B_OTU137 Thalamita_chaptalii_OTU132 Thalamita_gloriensis_OTU151 Thalamita_granosimana_OTU140 Thalamita_integra_OTU141 Thalamita_kagosimensis_OTU142 Thalamita_mitsiensis_OTU146 Thalamita_parvidens_OTU149 Thalamita_philippinensis_OTU143 Thalamita_picta_OTU150 Thalamita_quadrilobata_OTU155 Thalamita_savignyi_OTU158 Thalamita_seurati_OTU159 Thalamitoides_spinigera_OTU166 Thalamitoides_tridens_OTU167 Thranita_aff_rubridens_OTU157 Thranita_coeruleipes_OTU133 Thranita_crenata_OTU134 Thranita_danae_OTU135 Thranita_pseudopelsarti_OTU154 Thranita_rubridens_OTU156 Thranita_spinicarpa_OTU161 Thranita_spinimana_OTU163 Trierarchus_cf_cooperi_sp_A_OTU168 Trierarchus_cf_cooperi_sp_B_OTU169 Trierarchus_rotundifrons_OTU170 Trierarchus_woodmasoni_OTU171 Zygita_murinae_OTU173 ; END; BEGIN TREES; TITLE 'Portunoidea 28S-only best ML topology'; LINK TAXA = Taxa; TREE '28S-only best ML topology' = [&R] (Cancer_pagurus_OTU001:0.008666025,((Ovalipes_stephensoni_floridanus_OTU017:0.01502174,(Raymanninus_schmitti_OTU014:0.02078042,(Necora_puber_OTU031:1.0E-8,(Bathynectes_longispina_OTU021:0.00174455,(Carcinus_maenas_OTU007:1.0E-8,(Liocarcinus_depurator_OTU024:1.0E-8,Liocarcinus_maculatus_OTU026:0.00229895):0.00513286):0.05071364):0.00513669):0.00446101):0.00626491):0.0012582,((Portunus_ventralis_OTU081:0.05907339,(Portunus_Achelous_gibbesii_OTU060:0.00131714,Portunus_Achelous_spinimanus_OTU065:1.0E-8):0.02015185):0.01273702,((Portunus_sanguinolentus_hawaiiensis_OTU078:0.01693588,(Callinectes_ornatus_OTU050:0.01146826,Callinectes_sapidus_OTU051:0.01657421):0.01298153):0.01753503,((Lupocyclus_quinquedentatus_OTU055:0.02384559,(Portunus_Cycloachelous_granulatus_OTU067:0.01769018,(Portunus_Xiphonectes_arabicus_OTU082:0.01191178,Cronius_ruber_OTU116:1.0E-8):0.01048832):0.01452781):0.00791666,((Thalamitoides_spinigera_OTU166:0.00227689,Thalamitoides_tridens_OTU167:0.00571035):0.02066363,((Thalamita_picta_OTU150:0.06666568,Thalamita_seurati_OTU159:0.03220525):0.01686844,(((Goniosupradens_erythrodactylus_OTU119:0.01905249,(Trierarchus_woodmasoni_OTU171:0.00548229,(Caphyra_cf_fulva_OTU093:0.03048553,Caphyra_sp_B_OTU095:0.03382539):0.01249722):0.00532454):0.01439469,(Zygita_murinae_OTU173:0.0147129,(Trierarchus_rotundifrons_OTU170:0.0630486,(Trierarchus_cf_cooperi_sp_A_OTU168:0.01189133,Trierarchus_cf_cooperi_sp_B_OTU169:1.0E-8):0.01599373):0.00703674):0.00646398):0.00563162,(((Charybdis_annulata_OTU100:0.00290312,(Charybdis_hellerii_OTU104:0.00643775,Charybdis_lucifera_OTU108:0.01384478):0.00293912):0.00918989,((Charybdis_feriata_OTU103:0.00822496,Charybdis_sagamiensis_OTU112:0.00535749):0.00792491,(Goniosupradens_hawaiensis_OTU120:0.00282903,(Goniosupradens_acutifrons_OTU118:1.0E-8,Goniosupradens_obtusifrons_OTU121:1.0E-8):1.0E-8):0.00541862):0.0013977):0.00883371,((Thalamita_kagosimensis_OTU142:0.02515809,(Thranita_danae_OTU135:0.01436139,(Thranita_aff_rubridens_OTU157:0.00463202,(Thranita_coeruleipes_OTU133:0.00658317,(Thranita_rubridens_OTU156:0.00481319,(Thranita_spinimana_OTU163:0.00869846,(Thranita_pseudopelsarti_OTU154:0.01433837,(Thranita_crenata_OTU134:0.00126189,Thranita_spinicarpa_OTU161:0.00250061):0.01047971):0.00240307):0.00130954):9.7155E-4):0.00138914):0.00304722):0.0093997):0.01192451,(Thalamita_philippinensis_OTU143:0.01902877,((Thalamita_bouvieri_OTU131:0.0016765,Thalamita_mitsiensis_OTU146:0.00742922):0.00762256,((Lissocarcinus_holothuricola_OTU123:1.0E-8,Lissocarcinus_polybiodes_OTU126:0.00118376):0.00126084,((Lissocarcinus_arkati_OTU122:0.00946332,Lissocarcinus_laevis_OTU124:1.0E-8):0.00333557,(Thalamita_parvidens_OTU149:1.0E-8,((Thalamita_bevisi_OTU130:1.0E-8,(Thalamita_admete_OTU127:1.0E-8,(Thalamita_granosimana_OTU140:0.00108187,Thalamita_integra_OTU141:0.00124353):0.0031375):1.0E-8):0.00104119,((Thalamita_cf_gatavakensis_sp_B_OTU137:0.00862726,(Thalamita_aff_admete_OTU128:1.0E-8,Thalamita_cf_gatavakensis_sp_A_OTU138:0.00134128):1.0E-8):0.00402503,(Thalamita_chaptalii_OTU132:0.02159262,(Thalamita_gloriensis_OTU151:0.00554266,(Thalamita_quadrilobata_OTU155:0.00763496,Thalamita_savignyi_OTU158:0.00383891):0.00972639):0.00211845):0.00170372):1.0E-8):0.00131208):0.01128561):0.00195495):0.00855911):0.0026496):0.00370274):0.00230803):0.00456392):8.7152E-4):0.00893112):0.00676731):0.00681013):0.00851339):0.00608694):0.008666025); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr106680] END;