#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 17, 2024; 3:05 GMT

TreeBASE (cc) 1994-2008

Study reference:
Simpson M.G., Guilliams C.M., Hasenstab-lehman K.E., Mabry M.E., & Ripma L. 2017.
Phylogeny of the popcorn flowers: Use of genome skimming to evaluate monophyly
and interrelationships in subtribe Amsinckiinae (Boraginaceae). Taxon, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S21212]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=143;
        TAXLABELS
            Adelinia_grandis
            Amsinckia_intermedia_1
            Amsinckia_intermedia_2
            Amsinckia_menziesii
            Amsinckia_tessellata
            Andersongloassum_virginianum
            Andersonglossum_occidentale
            Cryptantha_affinis
            Cryptantha_albida
            Cryptantha_alfalfalis
            Cryptantha_alyssoides
            Cryptantha_ambigua
            Cryptantha_aspera
            Cryptantha_barbigera
            Cryptantha_calycotricha
            Cryptantha_capituliflora
            Cryptantha_clevelandii
            Cryptantha_clevelandii_1
            Cryptantha_clevelandii_2
            Cryptantha_clokeyi
            Cryptantha_corollata
            Cryptantha_crassisepala
            Cryptantha_crinita
            Cryptantha_cynoglossoides
            Cryptantha_decipens
            Cryptantha_diffusa
            Cryptantha_dumetorum
            Cryptantha_echinella
            Cryptantha_fendleri
            Cryptantha_flaccida
            Cryptantha_ganderi
            Cryptantha_globulifera
            Cryptantha_globulifera_1
            Cryptantha_globulifera_2
            Cryptantha_globulifera_3
            Cryptantha_glomerata
            Cryptantha_glomerulifera
            Cryptantha_gnaphalioides
            Cryptantha_gracilis
            Cryptantha_hispida
            Cryptantha_incana
            Cryptantha_intermedia
            Cryptantha_kelseyana
            Cryptantha_kingii
            Cryptantha_leiocarpa
            Cryptantha_mariposae
            Cryptantha_maritima
            Cryptantha_martirensis
            Cryptantha_mexicana
            Cryptantha_microstachys
            Cryptantha_minima
            Cryptantha_mohavensis
            Cryptantha_muricata
            Cryptantha_nemaclada
            Cryptantha_nevadensis
            Cryptantha_nevadensis_1
            Cryptantha_oxygona
            Cryptantha_peruviana
            Cryptantha_phaceloides
            Cryptantha_pterocarya
            Cryptantha_recurvata
            Cryptantha_scoparia
            Cryptantha_simulans
            Cryptantha_sparsiflora
            Cryptantha_subamplexicaulis
            Cryptantha_texana
            Cryptantha_torreyana
            Cryptantha_utahensis
            Cryptantha_watsonii
            Cryptantha_wigginsii
            Cynoglossum_creticum
            Dasynotus_daubenmirei
            Eremocarya_lepida
            Eremocarya_lepida_1
            Eremocarya_micrantha
            Eremocarya_micrantha_1
            Eremocarya_micrantha_2
            Greeneocharis_circumscissa
            Greeneocharis_circumscissa_1
            Greeneocharis_similis
            Greeneocharis_similis_1
            Hackelia_micrantha
            Harpagonella_arizonica
            Harpagonella_palmeri
            Johnstonella_angelica
            Johnstonella_angustifolia
            Johnstonella_costata
            Johnstonella_diplotrichia
            Johnstonella_echinosepala
            Johnstonella_fastigata
            Johnstonella_grayi
            Johnstonella_holoptera
            Johnstonella_inaequata
            Johnstonella_micromeres
            Johnstonella_parviflora
            Johnstonella_racemosa
            Microula_tibetica
            Myosotis_laxa
            Oreocarya_crymophila
            Oreocarya_flavoculata
            Oreocarya_flavoculata_1
            Oreocarya_glomerata
            Oreocarya_howelliana
            Oreocarya_humilis
            Oreocarya_hyposphila
            Oreocarya_nubigena
            Oreocarya_nubigena_1
            Oreocarya_nubigena_2
            Oreocarya_schoolcraftii
            Oreocarya_setosissima
            Oreocarya_sobolifera
            Oreocarya_subretusa_1
            Oreocarya_subretusa_2
            Oreocarya_subretusa_3
            Oreocarya_suffruticosa
            Oreocarya_ursina
            Oreocarya_virgata
            Pectocarya_linearis
            Pectocarya_penicillata
            Pectocarya_pusilla
            Pectocarya_setosa
            Plagiobothrys_austiniae
            Plagiobothrys_canescens
            Plagiobothrys_collinus
            Plagiobothrys_congestus
            Plagiobothrys_fulvus
            Plagiobothrys_glomeratus
            Plagiobothrys_glyptocarpus
            Plagiobothrys_gracilis
            Plagiobothrys_greenei
            Plagiobothrys_hispidus
            Plagiobothrys_jonesii
            Plagiobothrys_kingii
            Plagiobothrys_leptocladus
            Plagiobothrys_linifolius
            Plagiobothrys_mollis
            Plagiobothrys_myosotoides
            Plagiobothrys_nothofulvus
            Plagiobothrys_plurisepalus
            Plagiobothrys_polycaulis
            Plagiobothrys_tenellus
            Plagiobothrys_torreyi
            Plagiobothrys_undulatus
            ;
END;

BEGIN TREES;
      TITLE Amsinckiinae_21587_mtDNA;
      LINK TAXA = Taxa;
      TREE Imported_tree_1 = [&R] ((((Cryptantha_recurvata:0.007295853993547083,((Cryptantha_crassisepala:1.00000050002909E-6,Cryptantha_minima:1.00000050002909E-6):0.0029530175879273006,(Cryptantha_fendleri:0.0010853782601195348,Cryptantha_kelseyana:0.0018420784150152243):0.0018357033635682729):0.0037427742765830693):0.017348699782913722,(((Cryptantha_nevadensis:0.0037456415766813213,Cryptantha_scoparia:0.005290692589983197):0.006748975678973109,(Cryptantha_utahensis:0.012432903017979393,(Cryptantha_gracilis:0.005651338525927794,(Cryptantha_oxygona:0.00535191973850761,(Cryptantha_mohavensis:0.0011253272972377127,Cryptantha_pterocarya:3.9617164602216714E-4):0.004993257238544882):0.0038999796307059675):0.005204364450448608):0.005382554751781877):0.007929344972165787,((Cryptantha_ganderi:0.001736851886297196,(Cryptantha_barbigera:3.3297438255166194E-4,Cryptantha_intermedia:0.001957603523226274):4.5096072423828776E-4):0.00771350114456999,(Cryptantha_microstachys:0.0087723663414259,(Cryptantha_corollata:0.0023752842692298737,((Cryptantha_affinis:1.00000050002909E-6,Cryptantha_clevelandii:1.00000050002909E-6):9.217344018576934E-4,(Cryptantha_decipens:9.581930708820009E-4,Cryptantha_wigginsii:0.0013181080705806484):6.992650202747794E-4):3.588298648589746E-4):0.006854035753473413):0.0022354089075643222):0.013001846740013055):0.0027179792010602393):0.0016518445283904,(((Cryptantha_aspera:1.00000050002909E-6,Cryptantha_calycotricha:3.3012074309296736E-4):1.6716333259463186E-4,(Cryptantha_alfalfalis:1.6676408109583956E-4,(Cryptantha_gnaphalioides:0.00919125926625855,((Cryptantha_alyssoides:1.00000050002909E-6,Cryptantha_glomerata:2.481666717926207E-4):4.1157978357847345E-4,((Cryptantha_capituliflora:8.236869620444263E-5,Cryptantha_glomerulifera:1.00000050002909E-6):1.00000050002909E-6,(Cryptantha_cynoglossoides:4.481597534767115E-5,Cryptantha_kingii:1.64917233345302E-4):3.770470355667797E-5):1.00000050002909E-6):1.00000050002909E-6):2.451490344745632E-4):8.12145687169117E-5):0.003831690913583424,(Johnstonella_micromeres:0.01379969645290387,(Cryptantha_dumetorum:0.01063712540450114,(((Cryptantha_flaccida:0.012195370096367002,(Cryptantha_simulans:0.010528714185198688,Cryptantha_sparsiflora:0.00858529278501782):0.0012774537585526085):0.007004327611008588,(Cryptantha_watsonii:0.04334575893028024,((Cryptantha_ambigua:0.002615750799531713,Cryptantha_torreyana:0.0025539261059750883):0.03009220551493129,(Cryptantha_crinita:0.024975977512559176,Cryptantha_mariposae:0.02376382922130684):0.01929574876823129):0.02399531223787528):0.01829328753971389):0.007936217706966418,((Cryptantha_echinella:0.003470529739957408,Cryptantha_incana:0.0019578236559323952):0.009022312306832052,(((Cryptantha_clevelandii_2:9.364239362413272E-4,Cryptantha_leiocarpa:7.336386480158344E-4):0.0028343471022502145,(Cryptantha_clevelandii_1:0.0031627497375233374,(Cryptantha_nemaclada:5.435768705529583E-4,Cryptantha_nevadensis_1:0.002510324909113948):0.0013602881896281737):0.001453035567199808):3.975723999394785E-4,(Cryptantha_globulifera:5.932271801567219E-4,(Cryptantha_diffusa:8.284202487029439E-5,((Cryptantha_peruviana:9.972709339060763E-5,Cryptantha_phaceloides:1.00000050002909E-6):3.9759724579845534E-4,(Cryptantha_globulifera_1:1.00000050002909E-6,(Cryptantha_globulifera_2:1.00000050002909E-6,Cryptantha_globulifera_3:1.00000050002909E-6):8.277812046280844E-5):8.277993596040427E-5):1.00000050002909E-6):1.00000050002909E-6):0.0019253123502724634):0.0021992777719296755):0.0010641456599806882):0.007444200956366128):0.0020310601315779485):0.0018204980685761368):0.00359390969106306):0.0019142282864965392,(((Plagiobothrys_glomeratus:0.011161285657327305,Plagiobothrys_hispidus:0.010898615835012416):0.020336724693532305,(Greeneocharis_similis_1:0.005526904783463062,(Greeneocharis_similis:1.00000050002909E-6,(Greeneocharis_circumscissa:1.00000050002909E-6,Greeneocharis_circumscissa_1:1.00000050002909E-6):1.00000050002909E-6):0.010378872819811445):0.0192435629553317):0.0023970889659212973,(((Johnstonella_costata:1.00000050002909E-6,(Johnstonella_holoptera:3.3382887397414326E-4,(Johnstonella_racemosa:3.373322194087194E-4,(Johnstonella_fastigata:0.0011987833891213729,(Johnstonella_angustifolia:8.251438224458989E-5,Johnstonella_inaequata:5.027637831941997E-4):7.483869173922283E-4):1.00000050002909E-6):1.00000050002909E-6):2.50042210509581E-4):0.023804322759704014,(Johnstonella_grayi:0.01720013504420558,((Johnstonella_angelica:0.004844293458707383,Johnstonella_parviflora:0.0026664702730344937):0.016246381111288278,((Cryptantha_hispida:5.771200838317548E-4,Johnstonella_diplotrichia:8.43863624016924E-4):0.0015267721214698349,(Cryptantha_albida:0.0011482700990883233,(Cryptantha_mexicana:1.6534264044734928E-4,Cryptantha_texana:1.00000050002909E-6):5.302396910872631E-4):0.00289618551696824):0.01146095461172851):0.0015506816429688092):0.005349586976743632):0.015755479575991552,(((((Eremocarya_lepida:1.00000050002909E-6,Eremocarya_lepida_1:1.8722088673348909E-4):0.010210731145902492,(Eremocarya_micrantha:0.0012193057035611266,(Eremocarya_micrantha_1:3.3189961389190533E-4,Eremocarya_micrantha_2:2.3873829177526346E-4):4.7705759943960475E-4):0.008517579723895136):0.008059922574023933,((Cryptantha_martirensis:0.01432921451253852,(Cryptantha_clokeyi:0.007335728084022799,Cryptantha_muricata:0.021333876651613782):0.009206422120466204):0.010798140365079726,(Cryptantha_subamplexicaulis:0.002809696154704802,(Cryptantha_maritima:0.007283698662022059,Johnstonella_echinosepala:0.018175074610873396):0.0018596495886156722):0.011935056180872714):0.0029194042237042227):7.024061870725323E-4,((Oreocarya_crymophila:0.030798330580836305,(Oreocarya_hyposphila:0.030711589992042335,Oreocarya_sobolifera:0.043299251638494324):0.005788990847627704):0.002760752524892812,(((Oreocarya_flavoculata:0.041130730496036126,Oreocarya_virgata:0.029794612914928825):0.002303458228091501,(Oreocarya_setosissima:0.04545687101436898,Oreocarya_suffruticosa:0.04759963278186262):0.004351084513672017):0.0030043750356301183,((Oreocarya_humilis:0.03537098012295262,(Oreocarya_nubigena_1:0.030237958653963642,Oreocarya_ursina:0.04519033777029395):0.002944573911849598):0.00113673233099773,((Oreocarya_flavoculata_1:0.033887516228288915,(Oreocarya_nubigena:0.008840697384561735,(Oreocarya_howelliana:0.011577072328977962,Oreocarya_subretusa_1:0.006496239970437955):0.007289796031463994):0.029261360939979452):0.0031559905957434064,(Oreocarya_subretusa_2:0.03108897505087321,(Oreocarya_schoolcraftii:0.024438169941093723,(Oreocarya_glomerata:0.011534349692868583,(Oreocarya_nubigena_2:0.0030624766672802386,Oreocarya_subretusa_3:0.003713672108531813):0.008104042880428606):0.006208643614789584):0.004572377907895236):0.01305509285855754):8.230707416479979E-4):0.004374212020911052):0.004309591413959564):0.02022404033388179):0.0011804701262864592,((Plagiobothrys_fulvus:0.009647084308989981,((Plagiobothrys_collinus:5.532059778759285E-4,Plagiobothrys_nothofulvus:0.004298405430583443):0.0059659840526213636,(Plagiobothrys_canescens:0.005335363566604625,((Plagiobothrys_myosotoides:0.0075923628857733775,(Plagiobothrys_tenellus:8.636195692820513E-5,Plagiobothrys_torreyi:1.00000050002909E-6):0.0071084406839550755):0.00788006833643567,((Plagiobothrys_plurisepalus:0.00124705597411784,(Plagiobothrys_polycaulis:0.0013754038765327584,(Plagiobothrys_gracilis:5.095822961106312E-4,Plagiobothrys_greenei:1.7677935178952206E-4):1.67765045101798E-4):2.2895753882588697E-4):1.9435728233324024E-4,(Plagiobothrys_austiniae:0.0024311458432274965,((Plagiobothrys_mollis:0.0022729388597700125,(Plagiobothrys_congestus:0.0010303235092070987,Plagiobothrys_linifolius:0.001104457564565389):8.29961393260439E-4):8.046640335340802E-4,(Plagiobothrys_glyptocarpus:0.0010734234727331645,(Plagiobothrys_leptocladus:1.8861720254768332E-4,Plagiobothrys_undulatus:8.694820579397951E-5):1.6007626675964282E-4):0.001975938349236209):8.707474841764836E-4):5.178094169011093E-4):0.002425502983201832):0.0015875733857008629):0.00174491159606758):0.0010471748866880894):0.024883897953748964,((Plagiobothrys_jonesii:0.01355727259684968,(Plagiobothrys_kingii:0.014446358691315244,(Amsinckia_tessellata:0.010538062135518096,(Amsinckia_intermedia_1:4.293493127242801E-4,(Amsinckia_intermedia_2:2.820912320628618E-4,Amsinckia_menziesii:1.00000050002909E-6):5.250562477866825E-4):0.01148236995942764):0.016028975864051873):0.002603704962511237):0.0030123378555034683,(((Adelinia_grandis:0.04260694315728986,(Andersongloassum_virginianum:0.003380420917738408,Andersonglossum_occidentale:0.01109302957013521):0.009931443626194063):0.002118310022949255,((Cynoglossum_creticum:0.04448848058480446,Microula_tibetica:0.03482145967759309):0.004094026606304511,(Hackelia_micrantha:0.0014223752277099393,Myosotis_laxa:0.001007744649814457):0.018149134634586905):0.01441341589395802):0.0026211375473534984,(Dasynotus_daubenmirei:0.0846373222263656,((Harpagonella_arizonica:1.6834542875171314E-4,Harpagonella_palmeri:1.00000050002909E-6):0.026013338602117957,(Pectocarya_pusilla:0.04387210151010656,(Pectocarya_setosa:0.008925587181819825,(Pectocarya_linearis:1.00000050002909E-6,Pectocarya_penicillata:1.00000050002909E-6):0.003931646232292859):0.01044631619145528):0.00438929498124732):0.02402592512016738):0.009350078993364838):0.0054416140385076545):0.0012909418833359882):0.0011994816000297267):0.0016030129718573134):0.0010257418349598818):0.0019142282864965392):0.0;
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr107779]


END;