#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 19, 2024; 5:37 GMT TreeBASE (cc) 1994-2008 Study reference: Grandi N., Cadeddu M., Blomberg J., Jens M., & Tramontano E. 2017. HERV-W group evolutionary history in non-human primates: characterization of ERV-W orthologs in Catarrhini and related ERV groups in Platyrrhini. BMC Evolutionary Biology, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S22051] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=49; TAXLABELS ERV_1_1_CalJac_PVconsensus ERV1_1CJaLTR_ERV1_1CJaInt_ERV1_1 HERVW_subgroup1_consensus HERVW_subgroup2_consensus LTR10F_HERVIP10F_int_LTR10F LTR10F_HERVIP10FH_LTR10F LTR12_HERV9int_LTR12 LTR17_HERV17_LTR17 LTR2_HARLEQUIN_LTR2 LTR2_HERVEint_LTR2 LTR21A_HERVFH21I_LTR21A LTR30_HERV30I_LTR30 LTR35A_HERV1_I_int_LTR35A LTR4_HERV3int_LTR4 LTR46_HERVFc1_LTR46 LTR6A_HERVTint_LTR6A LTR71A_HERVP71Aint_LTR71A LTR7C_HERVHint_LTR7C MER41C_PRIMA41_MER41C MER48_HERVH48I_MER48 MER50_MER50I_MER50 MER57_MER57A_I_MER57 MER57A_MER57A_I_MER57A MTL2A1_HERVLint_MTL2A1 PABL_AI gorilla_gorilla_gorilla_gorGor3_chr12_35692937_35695882 gorilla_gorilla_gorilla_gorGor3_chr12_38035777_38041701 gorilla_gorilla_gorilla_gorGor3_chr17_59317825_59318777 gorilla_gorilla_gorilla_gorGor3_chr6_137848377_137848999 gorilla_gorilla_gorilla_gorGor3_chr9_99983329_99984432 nomascus_leucogenys_nomLeu3_chr11_57319215_57321839 nomascus_leucogenys_nomLeu3_chr17_21605861_21613345 nomascus_leucogenys_nomLeu3_chr18_41641585_41647608 nomascus_leucogenys_nomLeu3_chr20_58589539_58590163 nomascus_leucogenys_nomLeu3_chr22a_36931444_36934101 nomascus_leucogenys_nomLeu3_chr6_27610470_27613887 pan_troglodytes_panTro4_chr1_28472456_28472713 pan_troglodytes_panTro4_chr12_54255388_54258420 pan_troglodytes_panTro4_chr19_10251447_10252008 pongo_pygmaeus_abelii_ponAbe2_chr10_50392144_50393489 pongo_pygmaeus_abelii_ponAbe2_chr10_6196575_6198307 pongo_pygmaeus_abelii_ponAbe2_chr12_55188568_55189227 pongo_pygmaeus_abelii_ponAbe2_chr14_26833423_26836116 pongo_pygmaeus_abelii_ponAbe2_chr14_26842121_26842940 pongo_pygmaeus_abelii_ponAbe2_chr19_40880584_40883048 pongo_pygmaeus_abelii_ponAbe2_chr5_29323056_29325960 pongo_pygmaeus_abelii_ponAbe2_chr5_35260596_35261453 pongo_pygmaeus_abelii_ponAbe2_chr6_116136923_116139893 pongo_pygmaeus_abelii_ponAbe2_chr6_169988045_169988778 ; END; BEGIN TREES; TITLE 'Figue 5_tree'; LINK TAXA = Taxa; TREE Imported_tree_1 = [&R] (((((((((((((((((pongo_pygmaeus_abelii_ponAbe2_chr14_26833423_26836116:0.0,pongo_pygmaeus_abelii_ponAbe2_chr14_26842121_26842940:0.00246616):2.3E-7,(gorilla_gorilla_gorilla_gorGor3_chr17_59317825_59318777:0.03181212,pongo_pygmaeus_abelii_ponAbe2_chr5_35260596_35261453:0.03750645):0.0244336):0.03204501,nomascus_leucogenys_nomLeu3_chr20_58589539_58590163:0.0165879):0.02016661,(pan_troglodytes_panTro4_chr1_28472456_28472713:1.0E-7,pan_troglodytes_panTro4_chr19_10251447_10252008:0.01589819):0.04200905):0.00507895,((LTR17_HERV17_LTR17:0.00373791,HERVW_subgroup1_consensus:0.00342044):0.00240019,(pongo_pygmaeus_abelii_ponAbe2_chr6_116136923_116139893:0.04103878,(nomascus_leucogenys_nomLeu3_chr17_21605861_21613345:0.05766362,gorilla_gorilla_gorilla_gorGor3_chr12_35692937_35695882:0.08176103):0.0053341):0.00266003):0.00719128):0.00307074,(((nomascus_leucogenys_nomLeu3_chr18_41641585_41647608:0.02811981,pongo_pygmaeus_abelii_ponAbe2_chr10_6196575_6198307:0.01041464):3.81E-6,pongo_pygmaeus_abelii_ponAbe2_chr10_50392144_50393489:0.02171164):0.03667205,((HERVW_subgroup2_consensus:0.02280548,gorilla_gorilla_gorilla_gorGor3_chr12_38035777_38041701:0.0769303):0.01694181,(gorilla_gorilla_gorilla_gorGor3_chr9_99983329_99984432:0.05203953,(nomascus_leucogenys_nomLeu3_chr22a_36931444_36934101:0.02620559,pongo_pygmaeus_abelii_ponAbe2_chr5_29323056_29325960:0.03895749):0.01621137):0.01597883):0.00658751):0.00522469):0.00522914,(pongo_pygmaeus_abelii_ponAbe2_chr6_169988045_169988778:0.0350905,(pan_troglodytes_panTro4_chr12_54255388_54258420:0.14082563,(pongo_pygmaeus_abelii_ponAbe2_chr19_40880584_40883048:0.01906398,(nomascus_leucogenys_nomLeu3_chr11_57319215_57321839:0.03175614,pongo_pygmaeus_abelii_ponAbe2_chr12_55188568_55189227:0.0316699):0.01001705):0.01057477):3.2237E-4):0.01219951):0.00980104,gorilla_gorilla_gorilla_gorGor3_chr6_137848377_137848999:0.07775562):0.2565912,(ERV_1_1_CalJac_PVconsensus:0.02077294,ERV1_1CJaLTR_ERV1_1CJaInt_ERV1_1:0.10536105):0.30419264):0.09328046,(LTR30_HERV30I_LTR30:0.29047701,LTR12_HERV9int_LTR12:0.29871635):0.18672764):0.54894107,MER41C_PRIMA41_MER41C:0.56603913):0.11218435,(MER48_HERVH48I_MER48:0.37592743,LTR21A_HERVFH21I_LTR21A:0.416236):0.31789198):0.12677515,(LTR2_HERVEint_LTR2:0.60213721,LTR6A_HERVTint_LTR6A:0.63217577):0.12467206):0.42429721,LTR71A_HERVP71Aint_LTR71A:0.31201253):0.50740046,((((MER57A_MER57A_I_MER57A:0.0,MER57_MER57A_I_MER57:0.0):0.94044588,nomascus_leucogenys_nomLeu3_chr6_27610470_27613887:0.88711907):0.34039271,LTR2_HARLEQUIN_LTR2:0.85706512):0.74471981,(MTL2A1_HERVLint_MTL2A1:0.86497604,((LTR7C_HERVHint_LTR7C:0.73759121,LTR46_HERVFc1_LTR46:1.01649983):0.07105395,(PABL_AI:0.55384372,MER50_MER50I_MER50:0.36527151):0.61436338):0.23665456):0.39308143):0.58548483):0.0,LTR10F_HERVIP10F_int_LTR10F:0.4838019):0.47506888,(LTR10F_HERVIP10FH_LTR10F:1.78678843,(LTR35A_HERV1_I_int_LTR35A:2.21323754,LTR4_HERV3int_LTR4:0.76912974):0.73257412):0.14030046); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr109217] END;