#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 19, 2024; 5:42 GMT TreeBASE (cc) 1994-2008 Study reference: Grandi N., Cadeddu M., Blomberg J., Jens M., & Tramontano E. 2017. HERV-W group evolutionary history in non-human primates: characterization of ERV-W orthologs in Catarrhini and related ERV groups in Platyrrhini. BMC Evolutionary Biology, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S22051] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=44; TAXLABELS Callithrix_Jacchus_ERV_1_1_LTR_consensus LTR12_HERV9 LTR17_HERVW LTR2_HERVE_HARLEQUIN LTR21A_HERVFH21 LTR21A_HERVH48 LTR30_HERV30 LTR35A_HERV1 LTR4_HERV3 LTR46_HERVFC LTR61_HERV3 LTR6A_HERVT LTR6B_HERVT LTR71A_HERVADP LTR76_HERV3 LTR7A_HERVH LTR7B_HERVH LTR7C_HERVH MER41C_PRIMA41 MER48_HERVFH21 MER48_HERVH48 MER50 MER57A1_MER57 MER72_HERVFH21 MER72_HERVH48 MLT2A1_HERVL MLT2A2_HERVL MLT2B2_HERVL Saimiri_Boliviensis_ERV_1_1_LTR_consensus homo_sapiens_hg19_chr1_192855545_192856320 homo_sapiens_hg19_chr13_78633216_78633978 homo_sapiens_hg19_chr14_53574468_53575226 homo_sapiens_hg19_chr15_78531314_78532373 homo_sapiens_hg19_chr17_74608050_74608803 homo_sapiens_hg19_chr18_47975521_47976284 homo_sapiens_hg19_chr2_157501270_157502058 homo_sapiens_hg19_chr4_190972713_190973051 homo_sapiens_hg19_chr5_114427938_114428650 homo_sapiens_hg19_chr5_89713141_89713870 homo_sapiens_hg19_chr7_119018647_119019408 homo_sapiens_hg19_chr7_125095615_125096399 homo_sapiens_hg19_chr7_27315710_27316490 homo_sapiens_hg19_chr7_80811340_80812054 homo_sapiens_hg19_chrX_49480900_49481607 ; END; BEGIN TREES; TITLE 'Additional file 3_tree'; LINK TAXA = Taxa; TREE Imported_tree_1 = [&R] ((((((((((((homo_sapiens_hg19_chr1_192855545_192856320:0.04100155,homo_sapiens_hg19_chr4_190972713_190973051:0.0600579):0.00594085,homo_sapiens_hg19_chr7_27315710_27316490:0.03705228):0.00725586,LTR17_HERVW:0.00448798):0.00543771,(homo_sapiens_hg19_chr2_157501270_157502058:0.07373496,(homo_sapiens_hg19_chr14_53574468_53575226:0.04679578,homo_sapiens_hg19_chr7_125095615_125096399:0.05909252):0.00399149):0.00915834):0.00226288,(homo_sapiens_hg19_chr18_47975521_47976284:0.05646744,homo_sapiens_hg19_chr15_78531314_78532373:0.05811242):0.00692386):0.0259447,(homo_sapiens_hg19_chr5_114427938_114428650:0.08596571,(homo_sapiens_hg19_chr7_80811340_80812054:0.04922504,homo_sapiens_hg19_chrX_49480900_49481607:0.05816382):0.01144721):0.00336383):0.0294773,(homo_sapiens_hg19_chr5_89713141_89713870:0.06131263,homo_sapiens_hg19_chr7_119018647_119019408:0.06902284):0.01359737):0.00396049,homo_sapiens_hg19_chr13_78633216_78633978:0.0636569):0.0,(homo_sapiens_hg19_chr17_74608050_74608803:0.07062564):0.01318644):0.85571501,(Saimiri_Boliviensis_ERV_1_1_LTR_consensus:0.02904294,Callithrix_Jacchus_ERV_1_1_LTR_consensus:0.07586131):1.07131627):0.15964259,(((((LTR4_HERV3:0.50837508,LTR76_HERV3:0.44649097):0.22790874,LTR61_HERV3:0.88946735):0.29061293,LTR30_HERV30:1.08122575):0.14686471,MER57A1_MER57:1.01396647):0.08902956,(LTR35A_HERV1:1.04119552,(((LTR21A_HERVH48:0.0,LTR21A_HERVFH21:0.0):0.9492083,LTR46_HERVFC:0.83279355):0.22101258,((LTR6A_HERVT:0.13019485,LTR6B_HERVT:0.07042011):0.87645031,(LTR7B_HERVH:0.25616343,(LTR7A_HERVH:0.25542399,LTR7C_HERVH:0.12704484):0.091766):0.54913662):0.15144744):0.06349825):0.09625343):0.06818228):0.11221021,((((((MER72_HERVH48:0.0,MER72_HERVFH21:0.0):1.02571341,MER50:1.01914852):0.23664849,LTR71A_HERVADP:0.9719209):0.05619712,LTR12_HERV9:1.18129656):0.23359323,LTR2_HERVE_HARLEQUIN:0.96763602):0.0,((MER48_HERVH48:0.0,MER48_HERVFH21:0.0):0.86801725,(MER41C_PRIMA41:1.05430282,(MLT2B2_HERVL:0.20759293,(MLT2A1_HERVL:0.08447974,MLT2A2_HERVL:0.01348377):0.39940814):0.7817859):0.05825857):0.12837079):0.04421479); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr109219] END;