#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 12, 2024; 13:31 GMT

TreeBASE (cc) 1994-2008

Study reference:
Grum-grzhimaylo A.A., Falkoski D., Van den heuvel J., Valero-jim�nez C., Min B.,
Choi I., Lipzen A., Daum C., Aanen D., Tsang A., Henrissat B., Bilanenko E.N., De
vries R., Van kan J., Grigoriev I.V., & Debets A.J. 2018. The obligate alkalophilic
soda-lake fungus Sodiomyces alkalinus has shifted to a protein diet. Molecular
Ecology, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S22172]

BEGIN TAXA;
        TITLE  Untitled_Block_of_Taxa;
        DIMENSIONS NTAX=32;
        TAXLABELS
            Acremonium_alcalophilum
            Alternaria_alternata
            Aspergillus_flavus
            Aspergillus_oryzae
            Baudoinia_compniacensis
            Botrytis_cinerea
            Cladosporium_fulvum
            Cochliobolus_sativus
            Colletotrichum_fiorinae
            Colletotrichum_higginsianum
            Cordyceps_militaris
            Dothistroma_septosporum
            Eutypa_lata
            Fusarium_graminearum
            Glomerella_acutata
            Glomerella_cingulata
            Leptosphaeria_maculans
            Microascus_triginisporus
            Nectria_haematococca
            Neurospora_crassa
            Penicillium_digitatum
            Plectosphaerella_cucumerina
            Pyronema_confluens
            Sclerotinia_sclerotiorum
            Setosphaeria_turcica
            Sodiomyces_alkalinus
            Stagonospora_sp
            Thielavia_terrestris
            Trichoderma_atroviride
            Trichoderma_reesei
            Verticillium_alfalfae
            Verticillium_dahliae
            ;
END;

BEGIN TREES;
      TITLE Sodiomyces_alkalinus_RAxML_100_rapid_bootstraps;
      LINK TAXA = Untitled_Block_of_Taxa;
      TREE RAxML = [&R] (((((Stagonospora_sp:0.06344551365566427,(Leptosphaeria_maculans:0.07098663975203577,(Alternaria_alternata:0.03286498139927319,(Setosphaeria_turcica:0.028321404690448634,Cochliobolus_sativus:0.02752643633163671)100:0.020698742040612988)100:0.0317283351630674)100:0.021879484959120444)100:0.2082448531383275,(Baudoinia_compniacensis:0.16103780496912307,(Dothistroma_septosporum:0.03111565702313144,Cladosporium_fulvum:0.028315950093014627)100:0.13208607676077824)100:0.18052328578394294)100:0.0729501951338452,((Aspergillus_oryzae:9.555570656101416E-4,Aspergillus_flavus:0.0014437510487486597)100:0.09007786360628141,Penicillium_digitatum:0.13754096117818015)100:0.2194804289982717)100:0.029521667887733992,((Botrytis_cinerea:0.028533275175826676,Sclerotinia_sclerotiorum:0.025122677854122828)100:0.16602935690238116,(Eutypa_lata:0.18801965280596683,((Thielavia_terrestris:0.10990793096880506,Neurospora_crassa:0.12576555307384701)100:0.0864695044104521,((Microascus_triginisporus:0.24893617400459017,(((Trichoderma_atroviride:0.047397060655859684,Trichoderma_reesei:0.03803245260462304)100:0.07366334941379198,Cordyceps_militaris:0.15974944598855734)100:0.024885614707370548,(Fusarium_graminearum:0.06716242451218686,Nectria_haematococca:0.04400382197506277)100:0.05973325534286594)100:0.061249703181671396)100:0.01665829077250778,((Glomerella_cingulata:0.04278727570770434,(Colletotrichum_higginsianum:0.02898500198265737,(Colletotrichum_fiorinae:0.0010488482230143973,Glomerella_acutata:9.316686868853524E-4)100:0.030372146725288072)100:0.022220587388977878)100:0.060936107395495646,((Sodiomyces_alkalinus:0.03385772983716814,Acremonium_alcalophilum:0.041471781916603445)100:0.07923412058647024,(Plectosphaerella_cucumerina:0.11820318038169782,(Verticillium_alfalfae:0.020974640899755245,Verticillium_dahliae:0.005238271016577324)100:0.08567829402512847)100:0.017183457652639563)100:0.045759468544313946)100:0.04535731705071407)100:0.037008931380236205)100:0.02080817572126042)100:0.10758036813011237)100:0.0925675321835627):0.3062937370314715,Pyronema_confluens:0.3062937370314715);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr109660]


END;