#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 29, 2024; 17:50 GMT

TreeBASE (cc) 1994-2008

Study reference:
Liu S., He S., & Dai Y. 2017. Taxonomy and phylogeny of Lopharia s.s., Dendrodontia,
Dentocorticium and Fuscocerrena (Basidiomycota, Polyporales). IMA Fungus, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S21717]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=56;
        TAXLABELS
            Amauroderma_rugosum
            Boletopsis_leucomelaena
            Climacodon_septentrionalis
            Coriolopsis_gallica
            Coriolopsis_trogii
            Daedaleopsis_confragosa
            Datronia_mollis
            Datronia_scutellata
            Dendrodontia_He3278
            Dendrodontia_He3294
            Dendrodontia_He3322
            Dendrodontia_He3383
            Dendrodontia_He3777
            Dendrodontia_He4615
            Dendrodontia_Wu_9907_1
            Dendrodontia_bicolor_He2757
            Dendrodontia_bicolor_He2772
            Dentocorticium_sulphurellum
            Earliella_scabrosa
            Fomitopsis_pinicola
            Fuscocerrena_portoricensis_He2161
            Fuscocerrena_portoricensis_He2202
            Ganoderma_lucidum
            Ganoderma_tsugae
            Grifola_sordulenta
            Hydnellum_geogenium
            Irpex_lacteus
            Lentinus_squarrosulus
            Lentinus_tigrinus
            Lenzites_betulinus
            Lopharia_cinerascens
            Lopharia_sp._202_Dai13722
            Lopharia_sp._213_He20120724_4
            Lopharia_sp._233_Dai5598
            Lopharia_sp._234_Dai5147
            Lopharia_sp._243_Yuan2532
            Lopharia_sp._He2188
            Lopharia_sp._He2228
            Lopharia_sp._He2424
            Lopharia_sp._He2428
            Lopharia_sp._He2510
            Lopharia_sp._He2778
            Lopharia_sp._He4401
            Lopharia_sp._He4558
            Lopharia_sp._I204_Dai14978
            Phanerochaete_chrysosporium
            Phlebia_radiata
            Polyporus_squamosus
            Polyporus_umbellatus
            Pseudofavolus_cucullatus
            Pycnoporus_cinnabarinus
            Pycnoporus_sanguineus
            Trametes_ectypa
            Trametes_hirsuta
            Trametes_versicolor
            Trametopsis_cervina
            ;
END;

BEGIN TREES;
      TITLE Lopharia_22_ML;
      LINK TAXA = Taxa;
      TREE PAUP_1 = [&R] ((Hydnellum_geogenium:0.156065,Boletopsis_leucomelaena:0.121672):0.1157315,((Phlebia_radiata:0.125303,(Climacodon_septentrionalis:0.160763,(Phanerochaete_chrysosporium:0.152024,(Trametopsis_cervina:0.119263,Irpex_lacteus:0.11956):0.089074):0.016705):0.021917):0.050862,(Fomitopsis_pinicola:0.118271,(Grifola_sordulenta:0.124108,(((Lenzites_betulinus:0.082654,((Pycnoporus_cinnabarinus:0.036611,Pycnoporus_sanguineus:0.039235):0.02716,(Trametes_hirsuta:0.034092,(Trametes_ectypa:0.014376,Trametes_versicolor:0.014038):0.030317):0.029519):0.004189):0.018455,((Polyporus_umbellatus:0.109649,(Datronia_mollis:0.049615,(Pseudofavolus_cucullatus:0.055254,(Polyporus_squamosus:0.064722,Datronia_scutellata:0.069378):0.008652):0.008161):0.036178):0.03619,((Amauroderma_rugosum:0.055413,(Ganoderma_tsugae:0.029992,Ganoderma_lucidum:0.027246):0.015983):0.030937,((Lentinus_squarrosulus:0.042323,Lentinus_tigrinus:0.027964):0.040387,((Coriolopsis_gallica:0.007689,Coriolopsis_trogii:0.008933):0.052896,(Earliella_scabrosa:0.074547,Daedaleopsis_confragosa:0.076478):0.01591):0.009262):0.0152):0.015151):0.03777):0.009499,((((Dendrodontia_bicolor_He2772:1.0E-8,Dendrodontia_bicolor_He2757:0.001654):0.059783,(Dentocorticium_sulphurellum:0.057318,(Dendrodontia_He3294:0.001372,(Dendrodontia_He3322:1.0E-8,Dendrodontia_He3278:0.001643):0.001414):0.037408):0.042747):0.009128,((Fuscocerrena_portoricensis_He2161:0.00191,Fuscocerrena_portoricensis_He2202:1.0E-8):0.052692,((Dendrodontia_He3383:0.012345,Dendrodontia_He4615:0.001841):0.001681,(Dendrodontia_He3777:0.039666,Dendrodontia_Wu_9907_1:0.00969):0.001411):0.095199):0.026384):0.044654,((Lopharia_sp._He4401:0.135754,(Lopharia_sp._213_He20120724_4:0.020555,Lopharia_sp._He2778:0.033825):0.019428):0.039474,(Lopharia_cinerascens:0.051774,((Lopharia_sp._He2188:1.7633E-7,Lopharia_sp._He2228:0.005208):0.018935,((Lopharia_sp._He2428:0.001365,Lopharia_sp._He2510:0.00193,Lopharia_sp._He2424:0.001709):0.013232,(Lopharia_sp._202_Dai13722:0.00618,(Lopharia_sp._I204_Dai14978:0.009322,(Lopharia_sp._He4558:0.005811,(Lopharia_sp._233_Dai5598:0.012732,(Lopharia_sp._234_Dai5147:0.004265,Lopharia_sp._243_Yuan2532:0.003125):0.010027):0.002837):0.003512):0.002725):0.019337):0.008788):0.008687):0.042008):0.040274):0.059184):0.02587):0.019879):0.019644):0.1157315);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr110224]


END;