#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 11, 2024; 17:45 GMT

TreeBASE (cc) 1994-2008

Study reference:
He M. 2018. Three new species of Agaricus section Minores from China. Mycosphere,
.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S22065]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=109;
        TAXLABELS
            Agaricus_Jacobi_T_LAPAG52
            Agaricus_aff._goossensiae_ADK2751
            Agaricus_aridicola_LAPAG589
            'Agaricus armandomyces T_ZRL2015992'
            Agaricus_arrillagarum_LAPAG810
            Agaricus_badioniveus_LD2012131
            'Agaricus blatteus T_ZRL2012004'
            'Agaricus bonussquamulosus T_ZRL2010106'
            Agaricus_brunneolus_LAPAG938
            'Agaricus brunneolutosus T_MS514'
            'Agaricus callacii T_LAPAG797'
            'Agaricus campbellensis T_GAL9420'
            'Agaricus campestris T_LAPAG370'
            'Agaricus candidolutescens T_LD2012129'
            'Agaricus catenatus T_ZRL2012104'
            'Agaricus cerinupileus T_ZRL2012001'
            'Agaricus chartaceus T_H6271'
            Agaricus_coccyginus_ZRL2014354
            Agaricus_colpeteii_JX984565
            'Agaricus columellatus MIN_938394'
            Agaricus_columellatus._SB.2015_KJ912899.1
            'Agaricus comtulus CA963_LAPAG303'
            Agaricus_dilatostipes_ZRL2014450
            Agaricus_diminutivus_Vellinga2360
            Agaricus_diminutivus_WC912
            Agaricus_dulcidulus_PRM909627
            'Agaricus edmondoi CA1007_LAPAG412'
            'Agaricus elongatestipes T_ZRL2013271'
            'Agaricus fimbrimarginatus T_LD201250'
            Agaricus_flammicolor_LD201225
            Agaricus_flavopileatus_MS596
            Agaricus_friesianus_LAPAG592
            'Agaricus fulvoaurantiacus T_LD201404'
            Agaricus_gemlii_LAPAG286
            'Agaricus gemloides T_ZRL2014084'
            'Agaricus globosporus T_ZRL2012656'
            Agaricus_heinemannianus_LAPAG302
            Agaricus_huijsmanii_LAPAG639
            'Agaricus iesu et_marthae_LAPAG41'
            'Agaricus jingningensis T_ZRL20151562'
            'Agaricus kerriganii T_AH44509'
            'Agaricus laeticulus T_Goossens5272'
            'Agaricus lamelliperditus T_MDBF61_96'
            'Agaricus leucocarpus T_LD201215'
            Agaricus_luteofibrillosus_ZRL2012359
            Agaricus_luteomaculatus_LAPAG331
            Agaricus_luteopallidus_LD2012113
            'Agaricus mangaoensis T_ZRL2010056'
            Agaricus_marisae_LAPAG138
            'Agaricus matrum T_LAPAG817'
            Agaricus_megalosporus_ZRL2012199
            'Agaricus microviolaceus T_ZRL2012718'
            'Agaricus minorpurpureus T_ZRL2010058'
            'Agaricus neimengguensis T_ZRL20151845'
            Agaricus_pallens_LAPAG441
            'Agaricus parvibicolor T_LD2012116'
            'Agaricus patris T_LD201224'
            Agaricus_pseudolutosus_LAPAG454
            'Agaricus pseudopallens T_ZRL20151552'
            'Agaricus pseudopurpurellus T_ZRL2014063'
            Agaricus_purpurellus_LAPAG944
            'Agaricus purpureofibrillosus T_ZRL3080'
            'Agaricus purpurlesquameus T_LE2016047'
            'Agaricus robustulus T_CA847'
            Agaricus_robustulus_ZRL2012357
            'Agaricus rufusfibrillosus T_ZRL20151536'
            'Agaricus rufuspileus T_ZRL2014140'
            Agaricus_semotus_PDD68575
            'Agaricus sodalis T_LD2012159'
            'Agaricus sp 3_ZRL20162060'
            'Agaricus sp 3_ZRL20162082'
            'Agaricus sp 3_ZRL20162139'
            Agaricus_sp_ADK3580
            Agaricus_sp_CA843
            Agaricus_sp_CA845
            Agaricus_sp_CA846
            Agaricus_sp_CA848
            Agaricus_sp_CA935
            'Agaricus sp CA958_PYP014'
            Agaricus_sp_LAPAM14
            Agaricus_sp_LD201252
            Agaricus_sp_MATA774
            Agaricus_sp_MS386
            Agaricus_sp_NTS73
            Agaricus_sp_NTT33
            Agaricus_sp_NTT72
            Agaricus_sp_PS036
            Agaricus_sp_ZD1528
            Agaricus_sp_ZRL2010002
            Agaricus_sp_ZRL2010079
            Agaricus_sp_ZRL2011039
            Agaricus_sp_ZRL2014380
            Agaricus_sp_ZRL20151119
            Agaricus_sp_ZRL20151437
            Agaricus_sp_ZRL3056
            Agaricus_sp_ZRLLD013
            Agaricus_sp_ZRLWXH3067
            Agaricus_sp_ZRLWXH3161
            Agaricus_sp_ZRLWXH3402
            Agaricus_sp._GAL3083
            Agaricus_sp._GAL5812
            Agaricus_sp._TL2154
            Agaricus_sp._TL2307
            Agaricus_sp2_ZRL20161053
            Agaricus_sp24_ZRL2013320
            Agaricus_sp24_ZRL2013341
            'Agaricus stevensii FS_06.02.09_KJ877785.1'
            'Agaricus viridopurpurascens T_Horak68_79'
            Agaricus_wariatodes_TWM1589
            ;
END;

BEGIN TREES;
      TITLE Agaricus_subgenus_Minores_section_Minores_NJ;
      LINK TAXA = Taxa;
      TREE 'PAUP_1' = [&R] ((((Agaricus_sp._GAL5812:0.006263,'Agaricus campbellensis T_GAL9420':0.0):0.012881,(Agaricus_sp24_ZRL2013320:0.001219,Agaricus_sp24_ZRL2013341:0.004479):0.032965):0.0,(('Agaricus campestris T_LAPAG370':0.036447,'Agaricus candidolutescens T_LD2012129':0.047245):0.008455,('Agaricus leucocarpus T_LD201215':0.042384,(Agaricus_semotus_PDD68575:0.02455,Agaricus_sp_ZRLWXH3161:0.063983):0.0):0.0):0.009263):0.0027695,(((Agaricus_sp_ZRL2010002:0.029603,'Agaricus purpureofibrillosus T_ZRL3080':0.013658):0.003548,(Agaricus_sp_CA843:0.034537,('Agaricus minorpurpureus T_ZRL2010058':0.035734,(Agaricus_megalosporus_ZRL2012199:0.017671,Agaricus_sp_ZRL3056:0.034927):0.002762):0.002243):0.001511):0.001684,(Agaricus_aridicola_LAPAG589:0.020976,((((('Agaricus parvibicolor T_LD2012116':0.027251,Agaricus_wariatodes_TWM1589:0.004323):0.006001,('Agaricus blatteus T_ZRL2012004':0.029404,Agaricus_dilatostipes_ZRL2014450:0.014099):0.008709):0.003893,(('Agaricus catenatus T_ZRL2012104':0.029708,'Agaricus jingningensis T_ZRL20151562':0.015276):0.00463,((Agaricus_diminutivus_Vellinga2360:0.021182,'Agaricus neimengguensis T_ZRL20151845':0.006446):0.006119,('Agaricus mangaoensis T_ZRL2010056':0.010081,Agaricus_sp_ZRL20151437:0.011321):0.014577):0.004566):0.001038):0.002001,((Agaricus_sp_LD201252:0.014798,(Agaricus_sp_ZRL2011039:0.016823,('Agaricus microviolaceus T_ZRL2012718':0.015769,Agaricus_sp2_ZRL20161053:0.009504):0.001127):0.005315):0.006418,((Agaricus_aff._goossensiae_ADK2751:0.024241,Agaricus_huijsmanii_LAPAG639:0.038741):0.006994,((Agaricus_sp_MATA774:0.0307,('Agaricus chartaceus T_H6271':0.005313,'Agaricus lamelliperditus T_MDBF61_96':0.040664):0.016617):0.006269,(((Agaricus_columellatus._SB.2015_KJ912899.1:0.0,'Agaricus columellatus MIN_938394':0.0):0.030587,(Agaricus_colpeteii_JX984565:0.011136,('Agaricus laeticulus T_Goossens5272':0.035349,Agaricus_sp_LAPAM14:0.067153):0.004016):7.27E-4):0.0,((Agaricus_sp_CA848:0.004628,Agaricus_sp_PS036:0.003436):0.019351,((Agaricus_luteopallidus_LD2012113:0.007983,('Agaricus elongatestipes T_ZRL2013271':0.001689,Agaricus_sp_ZRLLD013:0.001888):0.00337):5.42E-4,((Agaricus_flavopileatus_MS596:0.006457,(Agaricus_sp_NTS73:0.0,Agaricus_sp_NTT33:0.004888):0.005):0.00346,('Agaricus cerinupileus T_ZRL2012001':0.006808,(Agaricus_sp_ZRL20151119:6.77E-4,Agaricus_sp_ZRLWXH3402:0.002675):0.004583):0.002304):4.22E-4):0.008322):0.01659):0.002836):0.001407):0.001203):0.001404):6.36E-4,('Agaricus callacii T_LAPAG797':0.014761,(((Agaricus_pseudolutosus_LAPAG454:0.015008,(Agaricus_sp_CA845:0.029443,((Agaricus_sp_MS386:0.016591,(Agaricus_sp_CA935:0.025059,(Agaricus_badioniveus_LD2012131:0.019891,Agaricus_flammicolor_LD201225:0.0071):0.007534):0.001974):0.001046,(('Agaricus brunneolutosus T_MS514':0.016472,Agaricus_sp_ZRL2010079:0.027054):0.0,(Agaricus_luteofibrillosus_ZRL2012359:0.013739,('Agaricus fulvoaurantiacus T_LD201404':0.001763,'Agaricus rufusfibrillosus T_ZRL20151536':0.007527):0.014705):0.018256):0.0):0.001653):0.002349):0.001561,((Agaricus_coccyginus_ZRL2014354:0.010515,Agaricus_sp_ZRLWXH3067:0.013341):0.00586,(('Agaricus patris T_LD201224':0.021739,('Agaricus sodalis T_LD2012159':0.015086,('Agaricus rufuspileus T_ZRL2014140':0.011138,('Agaricus sp CA958_PYP014':0.019608,(Agaricus_sp_ADK3580:0.013726,'Agaricus purpurlesquameus T_LE2016047':0.004728):0.001552):0.0):0.0):0.00172):0.008374,('Agaricus pseudopurpurellus T_ZRL2014063':0.021568,(Agaricus_sp_CA846:0.013979,('Agaricus bonussquamulosus T_ZRL2010106':0.006111,('Agaricus fimbrimarginatus T_LD201250':0.006151,('Agaricus robustulus T_CA847':0.0,Agaricus_robustulus_ZRL2012357:0.002137):0.009257):0.0):0.001501):0.006761):0.001588):0.001092):0.0):0.00123,(((Agaricus_Jacobi_T_LAPAG52:0.006472,Agaricus_purpurellus_LAPAG944:0.007254):0.002282,(Agaricus_brunneolus_LAPAG938:0.008445,((Agaricus_sp_ZRL2014380:0.005654,(Agaricus_friesianus_LAPAG592:0.007371,'Agaricus matrum T_LAPAG817':0.001092):0.00106):0.006277,(('Agaricus edmondoi CA1007_LAPAG412':0.014651,('Agaricus armandomyces T_ZRL2015992':0.008692,('Agaricus kerriganii T_AH44509':0.0,Agaricus_diminutivus_WC912:0.005239):0.006349):2.83E-4):0.007421,(Agaricus_sp._GAL3083:0.003725,(Agaricus_marisae_LAPAG138:0.019986,('Agaricus iesu et_marthae_LAPAG41':0.007849,('Agaricus stevensii FS_06.02.09_KJ877785.1':0.009766,(Agaricus_dulcidulus_PRM909627:0.001597,'Agaricus globosporus T_ZRL2012656':0.010495):0.001049):0.001514):0.0):9.86E-4):4.62E-4):7.79E-4):0.0):0.001119):5.29E-4,(((Agaricus_pallens_LAPAG441:0.0,'Agaricus pseudopallens T_ZRL20151552':0.002794):0.012314,(Agaricus_sp_NTT72:0.031806,(Agaricus_luteomaculatus_LAPAG331:0.011557,(Agaricus_heinemannianus_LAPAG302:0.015974,('Agaricus viridopurpurascens T_Horak68_79':0.005433,(Agaricus_sp._TL2154:0.003134,Agaricus_sp._TL2307:0.0):0.004167):0.017995):0.003208):1.13E-4):8.32E-4):0.0,((Agaricus_gemlii_LAPAG286:0.002807,('Agaricus sp 3_ZRL20162082':0.0,('Agaricus sp 3_ZRL20162060':0.0,'Agaricus sp 3_ZRL20162139':0.001148):0.0):0.002801):6.5E-4,(Agaricus_arrillagarum_LAPAG810:0.010932,('Agaricus comtulus CA963_LAPAG303':0.005841,(Agaricus_sp_ZD1528:0.003863,'Agaricus gemloides T_ZRL2014084':0.0046):0.00378):0.001147):6.6E-4):0.002942):0.003072):0.002355):4.69E-4):0.0):7.9E-4):0.0):0.0027695);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr110729]


END;