#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 19, 2024; 18:42 GMT

TreeBASE (cc) 1994-2008

Study reference:
Shen Y., Chung W., Huang T., Rodeva R., & Hung T. 2018. Unveiling Gymnosporangium
corniforme, G. unicorne, and a new G. niitakayamense sp. nov. in Taiwan. Mycoscience,
.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S21422]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=36;
        TAXLABELS
            'Gymnosporangium asiaticum TNM_F0027941'
            'Gymnosporangium asiaticum TNM_F0027942'
            'Gymnosporangium asiaticum TNM_F0027943'
            'Gymnosporangium corniforme TNM_F0028733'
            'Gymnosporangium corniforme TNM_F0028734'
            'Gymnosporangium corniforme TNM_F0028735'
            'Gymnosporangium corniforme TNM_F0028736'
            'Gymnosporangium corniforme TNM_F0028737'
            'Gymnosporangium corniforme TNM_F0028738'
            'Gymnosporangium corniforme TNM_F0029291'
            'Gymnosporangium corniforme TNM_F0029293'
            'Gymnosporangium corniforme TNM_F0029300'
            'Gymnosporangium corniforme TNM_F0029302'
            'Gymnosporangium corniforme TNM_F0030454'
            'Gymnosporangium corniforme TNM_F0030458'
            'Gymnosporangium corniforme TNM_F0030467'
            'Gymnosporangium corniforme TNM_F0030469'
            'Gymnosporangium corniforme TNM_F0030473'
            'Gymnosporangium juniperi-virginianae TNM_F0029763'
            'Gymnosporangium niitakayamense TNM_F0027944'
            'Gymnosporangium niitakayamense TNM_F0027945'
            'Gymnosporangium niitakayamense TNM_F0027946'
            'Gymnosporangium niitakayamense TNM_F0029292'
            'Gymnosporangium niitakayamense TNM_F0029297'
            'Gymnosporangium niitakayamense TNM_F0030459'
            'Gymnosporangium niitakayamense TNM_F0030464'
            'Gymnosporangium niitakayamense TNM_F0030470'
            'Gymnosporangium niitakayamense TNM_F0030474'
            'Gymnosporangium sabinae TNM_F0030475'
            'Gymnosporangium sabinae TNM_F0030476'
            'Gymnosporangium sabinae TNM_F0030477'
            'Gymnosporangium unicorne NTU_F100002'
            'Gymnosporangium unicorne NTU_F100003'
            'Puccinia kusanoi TNM_F0029314'
            'Puccinia kusanoi TNM_F0029955'
            'Puccinia purpurea TNM_F0029759'
            ;
END;

BEGIN TREES;
      TITLE Gymnosporangium_SSU_ITS_LSU_MLT;
      LINK TAXA = Taxa;
      TREE Imported_tree_1 = [&R] (('Puccinia purpurea TNM_F0029759':0.04124155,('Puccinia kusanoi TNM_F0029314':3.1951E-4,'Puccinia kusanoi TNM_F0029955':2.7346E-4)1.0000:0.02604115)1.0000:0.03544903,(((('Gymnosporangium unicorne NTU_F100002':0.0,'Gymnosporangium unicorne NTU_F100003':2.9819E-4)1.0000:0.00419064,('Gymnosporangium asiaticum TNM_F0027941':5.9928E-4,('Gymnosporangium asiaticum TNM_F0027943':0.0,'Gymnosporangium asiaticum TNM_F0027942':0.0)0.7458:2.9633E-4)1.0000:0.00103568)1.0000:0.0168649,('Gymnosporangium niitakayamense TNM_F0030470':7.7827E-4,(('Gymnosporangium niitakayamense TNM_F0027945':2.9738E-4,('Gymnosporangium niitakayamense TNM_F0027944':0.0,'Gymnosporangium niitakayamense TNM_F0027946':2.9775E-4)0.5405:0.0)0.6116:2.9754E-4,('Gymnosporangium niitakayamense TNM_F0029292':0.0,('Gymnosporangium niitakayamense TNM_F0029297':0.0,('Gymnosporangium niitakayamense TNM_F0030459':0.0,('Gymnosporangium niitakayamense TNM_F0030464':0.0,'Gymnosporangium niitakayamense TNM_F0030474':0.0)0.0520:0.0)0.0247:0.0)0.0274:0.0)0.2635:0.0)0.5819:1.1688E-4)1.0000:0.01780182)0.9999:0.01199886,(('Gymnosporangium juniperi-virginianae TNM_F0029763':0.01401966,('Gymnosporangium sabinae TNM_F0030476':0.00210926,('Gymnosporangium sabinae TNM_F0030475':5.9838E-4,'Gymnosporangium sabinae TNM_F0030477':0.0)0.7332:0.0)1.0000:0.0087999)0.9908:0.00524952,('Gymnosporangium corniforme TNM_F0029300':2.2431E-4,('Gymnosporangium corniforme TNM_F0030469':0.0,(('Gymnosporangium corniforme TNM_F0030454':2.9805E-4,('Gymnosporangium corniforme TNM_F0028735':0.0,'Gymnosporangium corniforme TNM_F0030458':0.0)0.4963:0.0)0.6183:2.9806E-4,((('Gymnosporangium corniforme TNM_F0028733':2.9849E-4,'Gymnosporangium corniforme TNM_F0028738':0.0)0.6342:5.9648E-4,('Gymnosporangium corniforme TNM_F0028736':0.0,'Gymnosporangium corniforme TNM_F0028734':0.00119854)0.5248:5.9679E-4)0.4275:0.0,('Gymnosporangium corniforme TNM_F0028737':0.0,('Gymnosporangium corniforme TNM_F0029291':0.0,('Gymnosporangium corniforme TNM_F0029293':0.0,('Gymnosporangium corniforme TNM_F0029302':0.0,('Gymnosporangium corniforme TNM_F0030467':0.0,'Gymnosporangium corniforme TNM_F0030473':0.0)0.0614:0.0)0.0169:0.0)0.0146:0.0)0.0299:0.0)0.2421:0.0)0.2477:0.0)0.3385:2.9806E-4)0.3685:3.7208E-4)1.0000:0.01533852)1.0000:0.01243892):0.03544903);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr110807]


END;