#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 17, 2024; 23:18 GMT TreeBASE (cc) 1994-2008 Study reference: Guterres D.C., Pinho D.B., Santos M.D., Elias S.G., Souza B.C., Miller R.N., & Dianese J.C. 2018. Taxononmy, phylogeny and divergence time of Apiosphaeria guaranitica, a neotropical pathogen on Bignoniaceous hosts. Mycologia, 110(3): 526-54. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S21934] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=44; TAXLABELS Apiosphaeria_guaranitica_CDUB247 'Apiosphaeria guaranitica CDUB247_asx' Apiosphaeria_guaranitica_UB22757 'Apiosphaeria guaranitica UB22757_asx' Apiosphaeria_guaranitica_UB23393 Apiosphaeria_guaranitica_UB23518 Apiosphaeria_guaranitica_UB23561 'Apiosphaeria guaranitica UB23561_asx' Apiosphaeria_guaranitica_UB23750 Apiosphaeria_guaranitica_UB23795 Apiosphaeria_guaranitica_UB23801 'Chaetoconis polygoni CBS_405_95_Polygonum_sachalinense' 'Chaetoconis polygoni MFLU_170965_Rumex_acetosa' 'Chiangraiomyces bauhiniae MFLUCC_17_1669_Bauhinia_sp' 'Chiangraiomyces bauhiniae MFLUCC_17_1670_Bauhinia_sp' 'Cytospora centrivillosa MFLU_17_0887' 'Cytospora nivea CFCC_89643_Salix_psammophila' 'Diaporthe cassines CBS_136440_Cassine_peragua' 'Diaporthe cynaroidis CBS_122676_Protea_cynaroides' 'Diaporthe decedens CBS_114281_Corylus_avellana' 'Diaporthe eres MFLUCC_17_1667_Fraxinus_pennsylvanica' 'Diaporthe eres MFLUCC_17_1668_Fraxinus_pennsylvanica' 'Diaporthe eres PS57_Glycine_max' 'Diaporthe litoricola MFLUCC_16_1195_Stem_of_sea_shore_plant' 'Diaporthe litoricola MFLUCC_17_1657_Stem_of_sea_shore_plant' 'Diaporthe maytenicola CBS_136441_Maytenus_acuminata' 'Diaporthe rudis BPI_748231' 'Diaporthe rudis IT_1526_Acer_campestre' 'Diaporthe rudis MFLUCC_16_1197_Umbelliferous_stem' 'Diaporthe rudis MFLUCC_17_1658_Umbelliferous_stem' 'Diaporthe rudis MFLU_17_0895_Acer_campestre' 'Hyaliappendispora galii MFLU_170893_Galium_sp' 'Hyaliappendispora galii MFLU_170966_Galium_sp' 'Mazzantia napelli AR3498_Aconitum_lycoctonum' 'Ophiodiaporthe cyathea YMJ1364_Cyathea_lepifera' 'Paradiaporthe artemisiae MFLUCC_14_0850_Artemisia_sp' 'Paradiaporthe artemisiae MFLUCC_17_1663_Artemisia_sp' 'Phaeocytostroma ambiguum CPC_17077_Zea_mays' 'Phaeocytostroma ambiguum CPC_17078_Zea_mays' 'Phaeodiaporthe appendiculata CBS123821_Acer_campestre' 'Phaeodiaporthe appendiculata CBS_123809_Acer_campestre' 'Pustulomyces bambusicola MFLUCC_11_0436_Bambusa_sp' 'Stenocarpella macrospora CBS_117560_Zea_mays' 'Stenocarpella maydis CBS_117559_Zea_mays' ; END; BEGIN TREES; TITLE 'Diaporthaceae phylogram LSU, ITS1, 5.8S and ITS2'; LINK TAXA = Taxa; TREE diaporthaceae_phylogram_BI = [&R] ((Apiosphaeria_guaranitica_UB23561:0.004253832,'Apiosphaeria guaranitica UB22757_asx':7.061596E-4,Apiosphaeria_guaranitica_UB23801:7.313665E-4,(Apiosphaeria_guaranitica_UB23518:0.004320716,Apiosphaeria_guaranitica_UB23795:0.001189615):0.00219882,(('Apiosphaeria guaranitica CDUB247_asx':7.423685E-4,'Apiosphaeria guaranitica UB23561_asx':7.325609E-4):0.006747371,(Apiosphaeria_guaranitica_UB22757:7.175611E-4,(Apiosphaeria_guaranitica_UB23750:0.003004566,(Apiosphaeria_guaranitica_CDUB247:5.174215E-4,Apiosphaeria_guaranitica_UB23393:5.158316E-4):0.004739764):0.004337614):0.008016026):0.003665514):0.066996,('Pustulomyces bambusicola MFLUCC_11_0436_Bambusa_sp':0.01401441,(('Stenocarpella macrospora CBS_117560_Zea_mays':0.007542313,'Stenocarpella maydis CBS_117559_Zea_mays':0.003349439):0.005457049,('Phaeocytostroma ambiguum CPC_17077_Zea_mays':4.347261E-4,'Phaeocytostroma ambiguum CPC_17078_Zea_mays':4.395168E-4):0.005782074):0.003005598,(('Paradiaporthe artemisiae MFLUCC_14_0850_Artemisia_sp':4.468033E-4,'Paradiaporthe artemisiae MFLUCC_17_1663_Artemisia_sp':4.38524E-4):0.01148264,(('Diaporthe decedens CBS_114281_Corylus_avellana':0.007891821,(('Diaporthe eres MFLUCC_17_1668_Fraxinus_pennsylvanica':0.001705786,'Diaporthe eres MFLUCC_17_1667_Fraxinus_pennsylvanica':4.352368E-4):0.004730664,('Diaporthe eres PS57_Glycine_max':0.01622426,('Diaporthe cassines CBS_136440_Cassine_peragua':0.01305257,('Diaporthe cynaroidis CBS_122676_Protea_cynaroides':0.001276936,('Diaporthe rudis BPI_748231':7.004123E-4,('Diaporthe rudis IT_1526_Acer_campestre':4.358378E-4,'Diaporthe rudis MFLU_17_0895_Acer_campestre':4.320556E-4):0.007097712,('Diaporthe rudis MFLUCC_17_1658_Umbelliferous_stem':4.436202E-4,'Diaporthe rudis MFLUCC_16_1197_Umbelliferous_stem':4.456157E-4):9.896614E-4):0.002542842):0.005034719):0.01406729):0.003479217):0.004257321):0.001812049,('Diaporthe maytenicola CBS_136441_Maytenus_acuminata':0.01623097,('Diaporthe litoricola MFLUCC_16_1195_Stem_of_sea_shore_plant':4.558764E-4,'Diaporthe litoricola MFLUCC_17_1657_Stem_of_sea_shore_plant':4.529929E-4):0.01557728,('Ophiodiaporthe cyathea YMJ1364_Cyathea_lepifera':0.0235182,('Chiangraiomyces bauhiniae MFLUCC_17_1669_Bauhinia_sp':4.452427E-4,'Chiangraiomyces bauhiniae MFLUCC_17_1670_Bauhinia_sp':4.572536E-4):0.02450169,(('Mazzantia napelli AR3498_Aconitum_lycoctonum':0.004376931,('Chaetoconis polygoni CBS_405_95_Polygonum_sachalinense':0.003761144,'Chaetoconis polygoni MFLU_170965_Rumex_acetosa':0.001714944):0.008205772):0.006915252,(('Cytospora nivea CFCC_89643_Salix_psammophila':0.01437009,'Cytospora centrivillosa MFLU_17_0887':0.01040775):0.03983295,(('Phaeodiaporthe appendiculata CBS_123809_Acer_campestre':4.50987E-4,'Phaeodiaporthe appendiculata CBS123821_Acer_campestre':4.33046E-4):0.01464543,('Hyaliappendispora galii MFLU_170966_Galium_sp':4.318507E-4,'Hyaliappendispora galii MFLU_170893_Galium_sp':4.470485E-4):0.01642629):0.007474899):0.004032014):0.01187758):0.009587292):0.00380038):0.003906932):0.003512429):0.066996); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr114303] END;