#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 25, 2024; 4:31 GMT TreeBASE (cc) 1994-2008 Study reference: Li A., Wang Q., & Bai F. 2018. Diversity and phylogeny of the basidiomycetous yeasts from plant leaves and soil, proposal of one hundred and seven new species and ten new genera. Studies in Mycology, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S23497] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=243; TAXLABELS Apiotrichum_porosum Auriculibuller_fuscus Bandonia_marina Bullera_albus Bullera_pseudoalba Bullera_unica Bulleribasidium_begoniae Bulleribasidium_foliicola Bulleribasidium_hainanensis Bulleribasidium_oberjochense Bulleribasidium_panici Bulleribasidium_pseudovariabilis Bulleribasidium_sanyaensis Bulleribasidium_setariae Bulleribasidium_siamensis Bulleribasidium_variabilis Bulleribasidium_wuzhishanensis CGMCC_2.2459 CGMCC_2.3099 CGMCC_2.3105 CGMCC_2.3165 CGMCC_2.3182 CGMCC_2.3320 CGMCC_2.3439 CGMCC_2.3442 CGMCC_2.3443 CGMCC_2.3445 CGMCC_2.3447 CGMCC_2.3458 CGMCC_2.3459 CGMCC_2.3460 CGMCC_2.3462 CGMCC_2.3463 CGMCC_2.3465 CGMCC_2.3469 CGMCC_2.3470 CGMCC_2.3472 CGMCC_2.3535 CGMCC_2.3536 CGMCC_2.3561 CGMCC_2.3563 CGMCC_2.3565 CGMCC_2.3568 CGMCC_2.3572 CGMCC_2.3580 CGMCC_2.3625 CGMCC_2.3755 CGMCC_2.3835 CGMCC_2.4012 CGMCC_2.4018 CGMCC_2.4022 CGMCC_2.4024 CGMCC_2.4427 CGMCC_2.4428 CGMCC_2.4429 CGMCC_2.4436 CGMCC_2.4437 CGMCC_2.4446 CGMCC_2.4449 CGMCC_2.4450 CGMCC_2.4537 CGMCC_2.5600 CGMCC_2.5601 CGMCC_2.5614 CGMCC_2.5615 CGMCC_2.5628 CGMCC_2.5648 CGMCC_2.5649 CGMCC_2.5658 CGMCC_2.5660 CGMCC_2.5674 CGMCC_2.5680 Carcinomyces_arundinariae Cryptococcus_amylolentus Cryptococcus_cuniculi Cryptococcus_depauperatus Cryptococcus_gattii Cryptococcus_mujuensis Cryptococcus_neoformans Cryptotrichosporon_anacardii Cryptotrichosporon_tibetensis Cuniculitrema_polymorpha Cutaneotrichosporon_cutaneum Cystofilobasidium_capitatum Derxomyces_anomala Derxomyces_boekhoutii Derxomyces_boninensis Derxomyces_cylindrica Derxomyces_hainanensis Derxomyces_hubeiensis Derxomyces_huiaensis Derxomyces_komagatae Derxomyces_linzhiensis Derxomyces_mrakii Derxomyces_nakasei Derxomyces_pseudocylindrica Derxomyces_pseudohuiaensis Derxomyces_pseudoschimicola Derxomyces_qinlingensis Derxomyces_schimicola Derxomyces_simaoensis Derxomyces_waltii Derxomyces_wuzhishanensis Derxomyces_yunnanensis Dimennazyma_cistialbidi Dioszegia_antarctica Dioszegia_athyri Dioszegia_aurantiaca Dioszegia_buhagiarii Dioszegia_butyracea Dioszegia_catarinonii Dioszegia_changbaiensis Dioszegia_crocea Dioszegia_cryoxerica Dioszegia_fristingensis Dioszegia_hungarica Dioszegia_takashimae Dioszegia_xingshanensis Dioszegia_zsoltii Fellomyces_borneensis Fellomyces_horovitziae Fellomyces_penicillatus Fellomyces_polyborus Fibulobasidium_inconspicuum Filobasidium_chernovii Filobasidium_elegans Filobasidium_floriforme Filobasidium_globisporum Filobasidium_magnum Filobasidium_oeirensis Filobasidium_stepposus Filobasidium_uniguttulatum Filobasidium_wieringae GPS20.4A1 GPS23.2A5 Gelidatrema_spencermartinsiae Genolevuria__tibetensis Genolevuria_amylolytica Genolevuria_armeniaca Genolevuria_bromeliarum Goffeauzyma_aciditolerans Goffeauzyma_gastricus HFB003_3 HLJ1B6 Hannaella_coprosmaensis Hannaella_kunmingensis Hannaella_luteola Hannaella_oryzae Hannaella_sinensis Hannaella_surugaensis Heterocephalacria_arrabidensis Holtermannia_corniformis Holtermanniella_nyarrowii Holtermanniella_takashimae Itersonillia_perplexans Kockovaella_barringtoniae Kockovaella_calophylli Kockovaella_fuzhouensis Kockovaella_imperatae Kockovaella_lichenicola Kockovaella_litseae Kockovaella_machilophila Kockovaella_ogasawarensis Kockovaella_phaffii Kockovaella_prillingeri Kockovaella_sacchari Kockovaella_schimae Kockovaella_thailandica Krasilnikovozyma_huempii Kwoniella_bestiolae Kwoniella_dejecticola Kwoniella_dendrophila Kwoniella_heveanensis Kwoniella_mangroviensis Kwoniella_pinus Kwoniella_shandongensis Kwoniella_shivajii Mrakia_frigida Naganishia_adeliensis Naganishia_albida Naganishia_randhawai Naganishia_uzbekistanensis Nielozyma_formosana Nielozyma_melastomae Papiliotrema_aurea Papiliotrema_bandonii Papiliotrema_laurentii Phaeotremella_fagi Phaeotremella_foliacea Phaeotremella_neofoliacea Phaeotremella_skinneri Phaeotremella_sp._TFL2B Phaffia_rhodozyma_CBS5905 Phaffia_rhodozyma_CBS7918 Piskurozyma_capsuligenum Piskurozyma_cylindricus Piskurozyma_silvicola Piskurozyma_taiwanensis Pseudotremella_allantoinivorans Pseudotremella_moriformis Rhynchogastrema_glucofermentans Rhynchogastrema_noutii_ Saitozyma_flava Saitozyma_paraflava Saitozyma_podzolica Sirobasidium_intermedium Sirobasidium_magnum Solicoccozyma_aerius Solicoccozyma_elinovii Solicoccozyma_fuscescens Solicoccozyma_keelungensis Solicoccozyma_sp._ATC4C Solicoccozyma_terricola Sterigmatomyces_halophilus Sugitazyma_miyagiana Takashimella_formosensis Takashimella_koratensis Takashimella_lagerstroeminae Tausonia_pamirica Tremella_aurantia Tremella_cinnabarina Tremella_flava Tremella_fuciformis Tremella_globispora_CBS6972 Tremella_indecorata Tremella_mesenterica Tremella_resupinata Tremella_taiwanensis Trichosporon_ovoides Trimorphomyces_papilionaceus Trimorphomyces_sakaeratica Udeniomyces_pyricola Vishniacozyma_carnescens Vishniacozyma_dimennae Vishniacozyma_globispora Vishniacozyma_heimaeyensis Vishniacozyma_peneaus Vishniacozyma_tephrensis Vishniacozyma_victoriae XZ129C6 XZ139E1 XZ200A1 leocosporidium_scottii ; END; BEGIN TREES; TITLE Agaricostimycotina_rDNA_align_11.1; LINK TAXA = Taxa; TREE 'PAUP_1' = [&R] (Sterigmatomyces_halophilus:0.5332495,(leocosporidium_scottii:0.662602,(((Phaffia_rhodozyma_CBS5905:0.028823,(CGMCC_2.5601:0.027455,Phaffia_rhodozyma_CBS7918:0.016283):0.007903):0.2106,(Cystofilobasidium_capitatum:0.260434,(Krasilnikovozyma_huempii:0.21581,(Udeniomyces_pyricola:0.124894,(Itersonillia_perplexans:0.084449,(Mrakia_frigida:0.065144,Tausonia_pamirica:0.064778):0.022273):0.008716):0.014813):0.045817):0.02271):0.084912,(((Naganishia_randhawai:0.085884,(Naganishia_uzbekistanensis:0.007487,(Naganishia_adeliensis:0.00168,Naganishia_albida:0.007261):0.003539):0.034219):0.067844,(((Solicoccozyma_keelungensis:0.034815,Solicoccozyma_sp._ATC4C:0.0294):0.129204,((Piskurozyma_cylindricus:0.013995,(Piskurozyma_taiwanensis:0.009764,Piskurozyma_silvicola:0.013498):0.012065):0.105552,(Piskurozyma_capsuligenum:0.074085,(Solicoccozyma_terricola:0.05833,(HFB003_3:0.019734,(Solicoccozyma_aerius:0.005352,(Solicoccozyma_elinovii:0.008934,Solicoccozyma_fuscescens:0.001393):0.006725):0.015413):0.005998):0.039675):0.00777):0.021286):0.041728,(Heterocephalacria_arrabidensis:0.173889,((Goffeauzyma_aciditolerans:0.131482,Goffeauzyma_gastricus:0.082413):0.098486,((CGMCC_2.3463:0.048559,(CGMCC_2.4012:0.016683,CGMCC_2.5680:0.007725):0.036417):0.072861,((CGMCC_2.5649:0.0,GPS23.2A5:7.31E-4):0.072382,(Filobasidium_uniguttulatum:0.045356,(Filobasidium_wieringae:0.044417,((Filobasidium_elegans:0.011353,(Filobasidium_magnum:0.0076,Filobasidium_floriforme:0.006725):0.001401):0.017411,(Filobasidium_oeirensis:0.01186,(Filobasidium_chernovii:0.019911,(Filobasidium_globisporum:0.002799,Filobasidium_stepposus:0.008514):9.58E-4):0.017322):0.0):0.019366):0.008756):0.006291):0.020297):0.038711):0.001245):0.022756):0.002598):0.077735,(((Holtermanniella_nyarrowii:0.013725,Holtermanniella_takashimae:0.007917):0.021702,(Holtermannia_corniformis:0.0219,(CGMCC_2.3462:0.002522,(CGMCC_2.3445:0.0,CGMCC_2.3460:0.0):0.0):0.004144):0.007588):0.158837,(Bandonia_marina:0.669189,((Carcinomyces_arundinariae:0.404703,(((Bulleribasidium_siamensis:0.02435,(Bulleribasidium_begoniae:0.02595,(Bulleribasidium_panici:0.009347,(CGMCC_2.4022:0.003189,CGMCC_2.4024:0.001034):0.005008):0.025131):0.012097):0.115532,((Bulleribasidium_wuzhishanensis:0.093662,(CGMCC_2.4427:0.08259,(Bulleribasidium_setariae:0.018552,XZ139E1:0.015114):0.06595):0.047371):0.032124,((Bulleribasidium_oberjochense:0.003873,(Bulleribasidium_pseudovariabilis:0.004115,Bulleribasidium_variabilis:0.006519):0.005021):0.078248,(Bulleribasidium_sanyaensis:0.148797,(CGMCC_2.4428:0.056901,(Bulleribasidium_hainanensis:0.034116,(Bulleribasidium_foliicola:0.009239,(CGMCC_2.3320:0.00193,CGMCC_2.4018:9.9E-4):0.00397):0.026549):0.013244):0.017884):0.059124):0.088513):0.021235):0.289232,(((Nielozyma_formosana:0.053076,Nielozyma_melastomae:0.082095):0.090205,((CGMCC_2.4537:0.015156,(CGMCC_2.3625:0.027201,((Dioszegia_zsoltii:0.00385,Dioszegia_catarinonii:0.006509):0.007679,(CGMCC_2.5658:0.004821,(Dioszegia_takashimae:0.003556,Dioszegia_athyri:0.008739):0.001821):0.0):0.0):0.008249):0.010294,((Dioszegia_hungarica:0.017434,Dioszegia_buhagiarii:0.032391):0.01127,((Dioszegia_butyracea:0.011542,(Dioszegia_antarctica:0.012367,Dioszegia_fristingensis:0.004463):0.027307):0.023274,((CGMCC_2.5674:0.017588,(Dioszegia_changbaiensis:0.017251,Dioszegia_cryoxerica:0.011158):0.010237):0.015161,(Dioszegia_xingshanensis:0.025543,(CGMCC_2.5628:0.023064,(Dioszegia_aurantiaca:0.007835,Dioszegia_crocea:0.006252):0.0):0.006935):0.010617):0.007231):0.009649):0.026697):0.068666):0.05543,(((Hannaella_surugaensis:0.045795,(Hannaella_coprosmaensis:0.045453,Hannaella_oryzae:0.033576):0.023282):0.02192,(Hannaella_sinensis:0.060059,(Hannaella_kunmingensis:0.018752,(Hannaella_luteola:0.008852,(CGMCC_2.3442:0.001072,CGMCC_2.4449:0.0):0.007528):0.025882):0.0103):0.07327):0.069221,(Derxomyces_anomala:0.074068,(Derxomyces_simaoensis:0.102952,((Derxomyces_linzhiensis:0.039899,(XZ129C6:0.004959,(CGMCC_2.5600:0.0,CGMCC_2.5660:0.0):6.59E-4):0.059587):0.024461,(((Derxomyces_hubeiensis:0.024638,(CGMCC_2.4429:0.010745,CGMCC_2.3572:0.004332):0.018009):0.032677,(Derxomyces_komagatae:0.011795,(CGMCC_2.3459:0.042046,(Derxomyces_pseudoschimicola:0.003468,Derxomyces_schimicola:0.012339):0.0):0.006703):0.065189):0.003524,((CGMCC_2.3561:0.010772,Derxomyces_wuzhishanensis:0.006185):0.034498,(Derxomyces_qinlingensis:0.044715,(Derxomyces_pseudocylindrica:0.039797,((Derxomyces_hainanensis:0.018879,(CGMCC_2.4446:0.007934,(CGMCC_2.3535:0.005227,(CGMCC_2.3470:0.006529,(Derxomyces_yunnanensis:0.003059,(CGMCC_2.3563:0.0,(CGMCC_2.3469:9.34E-4,(CGMCC_2.3568:8.26E-4,CGMCC_2.3458:0.0):8.28E-4):9.31E-4):0.004252):9.79E-4):0.0):0.00148):0.01389):0.009551,(((CGMCC_2.3755:0.00176,Derxomyces_nakasei:0.00682):0.007563,(CGMCC_2.4437:0.003657,(CGMCC_2.4436:0.003505,Derxomyces_boekhoutii:0.001724):0.00698):0.006146):0.023693,((CGMCC_2.2459:0.009843,Derxomyces_cylindrica:0.003144):0.02396,(Derxomyces_waltii:0.027336,((Derxomyces_huiaensis:0.011514,Derxomyces_pseudohuiaensis:0.011746):0.005278,(Derxomyces_boninensis:0.008535,Derxomyces_mrakii:0.016603):0.014067):0.002115):0.00249):0.006641):0.009268):0.006399):0.004714):0.012076):0.028281):0.016968):0.00977):0.03106):0.029826):0.04239):0.010943):0.06836):0.033127,((Phaeotremella_neofoliacea:0.083889,((CGMCC_2.5614:0.03785,(GPS20.4A1:0.011394,Phaeotremella_sp._TFL2B:0.035726):0.002163):0.020301,(Phaeotremella_fagi:0.061453,(Phaeotremella_skinneri:0.005498,Phaeotremella_foliacea:0.061133):0.002322):0.0):0.022484):0.101542,((Gelidatrema_spencermartinsiae:0.173616,((Takashimella_lagerstroeminae:0.021965,(Takashimella_formosensis:0.008577,Takashimella_koratensis:0.005264):0.010013):0.069324,((Cryptotrichosporon_tibetensis:0.053504,Cryptotrichosporon_anacardii:0.019262):0.051302,(Apiotrichum_porosum:0.084256,(Cutaneotrichosporon_cutaneum:0.098906,Trichosporon_ovoides:0.081318):0.024268):0.046484):0.015463):0.05656):0.044406,(((Saitozyma_podzolica:0.07332,(Saitozyma_paraflava:0.034121,(Saitozyma_flava:0.00826,XZ200A1:0.003202):0.0):0.12661):0.028352,((((Trimorphomyces_papilionaceus:0.068577,Trimorphomyces_sakaeratica:0.06473):0.089275,(Sugitazyma_miyagiana:0.245111,(CGMCC_2.3580:0.060286,CGMCC_2.3447:0.030699):0.465773):0.050376):0.025156,((Tremella_mesenterica:0.184282,Tremella_taiwanensis:0.255437):0.045784,(Tremella_resupinata:0.124502,((CGMCC_2.5615:0.014835,Tremella_globispora_CBS6972:0.005393):0.046676,(Tremella_fuciformis:0.040547,(Tremella_cinnabarina:0.001241,Tremella_flava:0.016494):0.058808):0.040375):0.012631):0.05502):0.119547):0.004891,((Cryptococcus_depauperatus:0.039418,(Cryptococcus_amylolentus:0.040533,(Cryptococcus_gattii:0.004095,Cryptococcus_neoformans:0.002829):0.008923):0.009421):0.109395,((CGMCC_2.3835:0.030001,(CGMCC_2.5648:0.032982,(CGMCC_2.4450:0.01713,Cryptococcus_cuniculi:0.082701):0.001775):0.001638):0.089884,(Kwoniella_shandongensis:0.043032,(Kwoniella_heveanensis:0.060772,((Kwoniella_dejecticola:0.013884,Kwoniella_pinus:0.011442):0.020925,(CGMCC_2.3439:0.028415,(Kwoniella_shivajii:0.037028,(Kwoniella_dendrophila:0.017565,(Kwoniella_bestiolae:0.018848,Kwoniella_mangroviensis:0.013769):0.017997):0.006531):0.008524):0.005526):0.044122):0.022779):0.004875):0.011822):0.106362):0.029102):0.04103,((((CGMCC_2.3105:0.004686,CGMCC_2.3472:0.005866):0.047743,(Vishniacozyma_dimennae:0.003876,Vishniacozyma_globispora:0.03336):0.049056):0.093881,((Vishniacozyma_victoriae:0.048004,(Vishniacozyma_carnescens:0.016462,Vishniacozyma_tephrensis:0.030707):0.005312):0.046474,(Vishniacozyma_peneaus:0.039392,((CGMCC_2.3099:0.018549,Vishniacozyma_heimaeyensis:0.014043):0.026894,(CGMCC_2.3165:0.0,CGMCC_2.3182:0.0):0.028077):0.011551):0.010928):0.11094):0.09318,((((Genolevuria_armeniaca:0.01812,Genolevuria_bromeliarum:0.008868):0.024825,(HLJ1B6:0.027215,(Genolevuria_amylolytica:0.041577,Genolevuria__tibetensis:0.026924):0.010716):0.027916):0.098468,((Fibulobasidium_inconspicuum:0.098524,Sirobasidium_magnum:0.083743):0.05254,((Tremella_indecorata:0.131879,(Pseudotremella_allantoinivorans:0.123154,Pseudotremella_moriformis:0.122272):0.067912):0.021318,(((Cryptococcus_mujuensis:0.044918,Sirobasidium_intermedium:0.083578):0.056038,(Bullera_unica:0.004145,Bullera_albus:0.020168):0.094299):0.021896,((Rhynchogastrema_glucofermentans:0.026263,Rhynchogastrema_noutii_:0.021587):0.059898,(Papiliotrema_aurea:0.051296,(Bullera_pseudoalba:0.037955,(Papiliotrema_laurentii:0.042876,(Auriculibuller_fuscus:0.039075,Papiliotrema_bandonii:0.040573):0.014397):0.011131):0.023872):0.014408):0.02843):0.003315):0.030259):0.003625):0.011531,((Dimennazyma_cistialbidi:0.102735,Tremella_aurantia:0.052375):0.070762,(Cuniculitrema_polymorpha:0.095216,(Fellomyces_horovitziae:0.08045,((Fellomyces_penicillatus:0.011151,(Fellomyces_polyborus:0.009031,Fellomyces_borneensis:0.005252):0.002237):0.107931,(Kockovaella_fuzhouensis:0.049641,((CGMCC_2.3465:0.044494,((CGMCC_2.3443:0.019261,(CGMCC_2.3536:8.91E-4,CGMCC_2.3565:8.91E-4):0.007822):0.011784,(Kockovaella_thailandica:0.042999,(Kockovaella_imperatae:0.022682,Kockovaella_sacchari:0.013858):0.001527):0.033289):0.019688):0.011185,(Kockovaella_phaffii:0.070105,((Kockovaella_barringtoniae:0.023633,Kockovaella_machilophila:0.05873):0.003054,((Kockovaella_prillingeri:0.020504,Kockovaella_ogasawarensis:0.039858):0.003322,(Kockovaella_lichenicola:0.0176,(Kockovaella_schimae:0.019961,(Kockovaella_calophylli:0.004527,Kockovaella_litseae:0.002869):0.009895):0.00392):0.015915):0.014544):0.006622):0.0):0.031194):0.030455):0.020181):0.017908):0.056219):0.024193):0.019295):0.008057):0.04213):0.012586):0.015847):0.004555):0.109578):0.059354):0.125266):0.254585):0.5332495); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr114789] END;