#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 12, 2024; 1:49 GMT TreeBASE (cc) 1994-2008 Study reference: Crous P.W., Wingfield M.J., Burgess T.I., Hardy G., Barber P., Alvarado P., Barnes C.W., Buchanan P., Heykoop M., Moreno G., Thangavel R., Van der spuy S., Barili A., Barrett S., Cacciola S.O., Cano-lira J.F., Crane C., Decock C., Gibertoni T.B., Guarro J., Guevara-suarez M., Hubka V., Kolařík M., Lira C.S., Ordoñez M.E., Padamsee M., Ryvarden L., Soares A.M., Stchigel A.M., Sutton D., Vizzini A., Weir B.S., Acharya K., Aloi F., Baseia I.G., Blanchette R.A., Bordallo J.J., Bratek Z., Butler T., Cano-canals J., Carlavilla J.R., Chander J., Cheewangkoon R., Cruz R.H., Da silva M., Dutta A.K., Ercole E., Escobio V., Esteve-raventós F., Flores J.A., Gené J., Góis J.S., Haines L., Held B.W., Jung M.H., Hosaka K., Jung T., Jurjević Ž., Kautman V., Kautmanova I., Kiyashko A.A., Kozanek M., Kubátová A., Lafourcade M., La spada F., Latha K., Madrid H., Malysheva E., Manimohan P., Manjón J., Martín M.P., Mata M., Merényi Z., Morte A., Nagy I., Normand A., Paloi S., Pattison N., Pawłowska J.Z., Pereira O.L., Petterson M.E., Picillo B., Raj K., Roberts A., Rodríguez A., Rodríguez-campo F.J., Romański M., Ruszkiewicz-michalska M., Scanu B., Schena L., Semelbauer M., Sharma R., Shouche Y., Silva V., Staniaszek-kik M., Stielow B., Tapia C., Taylor P.W., Toome-heller M., Vabeikhokhei J.M., Van diepeningen A.D., Van hoa N., Tri M.V., Wiederhold N.P., Wrzosek M., Zothanzama J., & Groenewald J.Z. 2017. Fungal Planet description sheets: 558-624. Persoonia, 38: 240-384. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S20946] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=90; TAXLABELS Bolbitius_lacteus_JX968342.1 Bolbitius_titubans_JX968369.1 Candida_atakaporum_KY106307.1 Candida_broadrunensis_KY106372.1 Candida_panamericana_JQ025407.1 'Candida rongomai-pounamu KY285009' Candida_sake_KY106732.1 Candida_taliae_KY106790.1 Candida_tanzawaensis_KY106794.1 Candida_vespimorsuum_KY285007 Clitopilus_geminus_HM164411.1 Clitopilus_lateritius_HM164410.1 Clitopilus_pseudopiperitus_GQ289217.1 Conocybe_coprophila_JX968273.1 Conocybe_siliginea_JX968343.1 Conocybe_smithii_KF830088.1 Conocybe_sulcatipes_AY207178.1 Cyathus_apiculatus_KT365521.1 Cyathus_aurantogriseocarpus_KX966027 Cyathus_batistae_KT365520.1 Cyathus_pedicellatus_KT365524.1 Cyathus_pedunculatus_KT365522.1 Cyathus_poeppigii_DQ463339.1 Cyathus_stercoreus_DQ463338.1 Dichomitus_squalens_HQ659224.1 Ganoderma_mizoramense_KY747490 Ganoderma_multiplicatum_KU570941.1 Ganoderma_parvulum_JX310833.1 Ganoderma_resinaceum_KX372026.1 Ganoderma_tropicum_KF495010.1 Gyroporus_cyanescens_KT363685.1 Gyroporus_lacteus_KT363683.1 Gyroporus_pseudocyanescens_KY576806 Gyroporus_pseudocyanescens_KY576807 Gyroporus_pseudolacteus_KX869881.1 Gyroporus_purpurinus_EU718141.1 Gyroporus_subalbellus_EU718144.1 Hodophilus_atropunctus_KU882904.1 Hodophilus_hymenocephalus_KP257218.1 Hodophilus_indicus_KY815097 Hodophilus_micaceus_KU882903.1 Humidicutis_dictiocephala_KY780120 Humidicutis_marginata_var._olivacea_KF291145.1 Hygrocybe_appalachianensis_KF381547.1 Hygrocybe_calciphila_KF381549.1 Hygrocybe_macrosiparia_KY582490 Hygrocybe_persistens_KF291087.1 Hygrocybe_sangayensis_KY582489 Hygrophorus_auratocephalus_DQ457672.1 Hypholoma_dispersum_HQ604746.1 Hypholoma_marginatum_EU029942.1 Megasporoporia_hexagonoides_AY333802.1 Megasporoporiella_variabilicolor_KX619575.1 Perenniporia_aridula_JQ001847.1 Perenniporia_brasiliensis_KX619595 'Perenniporia centrali-africana KX619605.1' Perenniporia_corticola_JN048779.1 Perenniporia_detrita_FJ393866.1 Perenniporia_paraguyanensis_KX619588 Perenniporia_tibetica_JF706332.1 Pholiotina_aberrans_JX968373.1 Pholiotina_cyanopus_JX968274.1 Pholiotina_longistipitata_KY627843 Phytophthora_moyootj_KP004499.1 Rhodocybe_gemina_DQ071715.2 Rhodocybe_matesina_KY629963 Rhodocybe_matesina_KY629964 Rhodocybe_paurii_AY286004.1 Rhodocybe_spongiosa_GU384628.1 Rhodocybe_truncata_AF223168.1 Rhodotorula_babjevae_KY108984.1 Rhodotorula_diobovata_KY109033.1 Rhodotorula_glutinis_KY109043.1 Rhodotorula_kratochvilovae_KY109048.1 Rhodotorula_ngohengohe_KY285006 Russula_arunii_KY946732 Russula_arunii_KY946733 Russula_granulata_KT933832.1 Russula_laurocerasi_AB154724.1 Russula_putida_HG798526.1 Saksenaea_erythrospora_HM776683.1 Saksenaea_loutrophoriformis_HM776682 Saksenaea_oblongispora_HM776676.1 Saksenaea_trapezispora_LT607407.1 Saksenaea_vasiformis_HM776682.1 Sparsitubus_nelumbiformis_DQ887631.1 Stropharia_semiglobata_KU640176.1 Stropharia_umbonescens_AF261626.1 Truncospora_detrita_KX619585.1 Vanderbylia_fraxinea_KX081152.1 ; END; BEGIN TREES; TITLE 'Bayesian Mucoromycotina, Pucciniomycotina, Saccharomycotina and Agaricomycotina LSU overview phylogeny'; LINK TAXA = Taxa; TREE 'Bayesian Mucoromycotina, Pucciniomycotina, Saccharomycotina and Agaricomycotina LSU overview phylogeny' = [&R] (Phytophthora_moyootj_KP004499.1:1.612895,((Saksenaea_erythrospora_HM776683.1:0.00555136,(Saksenaea_loutrophoriformis_HM776682:0.001084265,Saksenaea_vasiformis_HM776682.1:0.001112553):0.01287801):0.01926208,(Saksenaea_oblongispora_HM776676.1:0.00807346,Saksenaea_trapezispora_LT607407.1:0.01323439):0.01505038):0.3268669,(((((((Candida_atakaporum_KY106307.1:0.01289216,Candida_panamericana_JQ025407.1:0.01490239):0.009382408,Candida_tanzawaensis_KY106794.1:0.01451761):0.02888151,Candida_taliae_KY106790.1:0.02725121):0.03005224,'Candida rongomai-pounamu KY285009':0.01436555):0.05142795,(Candida_broadrunensis_KY106372.1:0.04080549,(Candida_sake_KY106732.1:0.007603868,Candida_vespimorsuum_KY285007:0.01408984):0.02525525):0.06478863):0.4011832,(((Rhodotorula_babjevae_KY108984.1:0.001110913,Rhodotorula_glutinis_KY109043.1:0.00113527,Rhodotorula_diobovata_KY109033.1:0.004402586):0.01234924,Rhodotorula_ngohengohe_KY285006:0.001240511):0.008455309,Rhodotorula_kratochvilovae_KY109048.1:0.01289025):0.203664):0.1012504,(((Bolbitius_lacteus_JX968342.1:0.001058056,Conocybe_siliginea_JX968343.1:9.989114E-4):0.01150506,(Conocybe_coprophila_JX968273.1:0.006580746,(Pholiotina_cyanopus_JX968274.1:0.009722752,((Pholiotina_aberrans_JX968373.1:0.001653767,(Conocybe_sulcatipes_AY207178.1:0.006210919,Pholiotina_longistipitata_KY627843:0.01179224):0.005403459):0.007467939,Conocybe_smithii_KF830088.1:0.00655285):0.003277061):0.00962707):0.0167101,Bolbitius_titubans_JX968369.1:0.01718518,(Stropharia_semiglobata_KU640176.1:0.001383189,((Hypholoma_marginatum_EU029942.1:0.001252998,Hypholoma_dispersum_HQ604746.1:0.001241793):0.008162185,Stropharia_umbonescens_AF261626.1:0.004238267):0.003695438):0.02178638,((((Clitopilus_geminus_HM164411.1:0.006408459,(Rhodocybe_matesina_KY629963:0.00106047,Rhodocybe_matesina_KY629964:0.001087597):0.02155636):0.02520136,(Rhodocybe_gemina_DQ071715.2:0.001089548,Rhodocybe_truncata_AF223168.1:0.00104842):0.01558622,Clitopilus_pseudopiperitus_GQ289217.1:0.02133465):0.01228829,Clitopilus_lateritius_HM164410.1:0.01481631):0.02037783,(Rhodocybe_spongiosa_GU384628.1:0.02557936,Rhodocybe_paurii_AY286004.1:0.02352555):0.006402554):0.03614216,((Dichomitus_squalens_HQ659224.1:0.003285005,(Sparsitubus_nelumbiformis_DQ887631.1:0.01333882,(Perenniporia_aridula_JQ001847.1:0.001017823,'Perenniporia centrali-africana KX619605.1':0.001107638):0.00388267,Perenniporia_brasiliensis_KX619595:0.0111961):0.005519376,(((Megasporoporia_hexagonoides_AY333802.1:0.001530095,Megasporoporiella_variabilicolor_KX619575.1:0.001956761):0.01280962,(Perenniporia_detrita_FJ393866.1:0.001073795,Truncospora_detrita_KX619585.1:0.001039807):0.01924554):0.005631929,Perenniporia_paraguyanensis_KX619588:0.03512774):0.009985683,Perenniporia_corticola_JN048779.1:0.001570586,Perenniporia_tibetica_JF706332.1:0.001834233):0.01015299,(Ganoderma_mizoramense_KY747490:0.001221958,Ganoderma_parvulum_JX310833.1:0.001034042):0.00328654,Ganoderma_resinaceum_KX372026.1:0.002789769,(Ganoderma_tropicum_KF495010.1:0.001062362,Vanderbylia_fraxinea_KX081152.1:0.001069556):0.001891899,Ganoderma_multiplicatum_KU570941.1:0.001788966):0.05917464,((Humidicutis_dictiocephala_KY780120:0.02326046,Hygrophorus_auratocephalus_DQ457672.1:0.01682329):0.02209486,Humidicutis_marginata_var._olivacea_KF291145.1:0.03781959):0.02860714,((Cyathus_apiculatus_KT365521.1:0.001079758,Cyathus_stercoreus_DQ463338.1:0.001049373):0.01578915,(Cyathus_aurantogriseocarpus_KX966027:0.001017128,Cyathus_poeppigii_DQ463339.1:0.001033104,Cyathus_pedunculatus_KT365522.1:0.001048322,Cyathus_pedicellatus_KT365524.1:0.001158531,Cyathus_batistae_KT365520.1:0.001018172):0.006482359):0.09672311,((((Russula_arunii_KY946732:0.0012199,Russula_arunii_KY946733:0.001251821):0.006814564,(Russula_laurocerasi_AB154724.1:0.006243244,Russula_putida_HG798526.1:0.005974502):0.006966733):0.004809996,Russula_granulata_KT933832.1:0.002797687):0.09827013,(((Gyroporus_cyanescens_KT363685.1:0.0222366,(Gyroporus_lacteus_KT363683.1:0.03088237,Gyroporus_pseudolacteus_KX869881.1:0.04189986):0.01260812,(Gyroporus_pseudocyanescens_KY576806:9.810519E-4,Gyroporus_pseudocyanescens_KY576807:9.925525E-4):0.02769722):0.01107652,Gyroporus_subalbellus_EU718144.1:0.04549439):0.02117181,Gyroporus_purpurinus_EU718141.1:0.04657817):0.1887918):0.03429806,(((Hygrocybe_appalachianensis_KF381547.1:0.04128308,(Hygrocybe_macrosiparia_KY582490:0.02060946,Hygrocybe_sangayensis_KY582489:0.02563916):0.02986537):0.02957032,Hygrocybe_persistens_KF291087.1:0.04177654):0.03353741,Hygrocybe_calciphila_KF381549.1:0.09313493):0.05028073):0.05961167,((Hodophilus_atropunctus_KU882904.1:0.007886683,Hodophilus_micaceus_KU882903.1:0.007641852):0.01158211,(Hodophilus_hymenocephalus_KP257218.1:0.02672337,Hodophilus_indicus_KY815097:0.05529798):0.01608261):0.09956299):0.1134047):0.214286); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr115753] END;