#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 19, 2024; 6:59 GMT TreeBASE (cc) 1994-2008 Study reference: Crous P.W., Luangsa-ard J.J., Wingfield M.J., Carnegie A., Hernández-restrepo M., Lombard L., Roux J., Barreto R.W., Baseia I.G., Cano-lira J.F., Martín M.P., Morozova O.V., Stchigel A.M., Summerell B., Brandrud T.E., Dima B., García D., Giraldo A., Guarro J., Gusmão L.F., Khamsuntorn P., Noordeloos M.E., Nuankaew S., Pinruan U., Rodríguez-andrade E., Souza-motta C.M., Thangavel R., Van iperen A., Abreu V.P., Accioly T., Alves J.L., Andrade J.P., Bahram M., Baral H., Barbier E., Barnes C.W., Bendiksen E., Bernard E., Bezerra J.D., Bezerra J.L., Bizio E., Blair J.E., Bulyonkova T., Cabral T.S., Caiafa M.V., Cantillo T., Colmán A.A., Conceição L.B., Cruz S., Cunha A.O., Darveaux B.A., Da silva A.L., Da silva G.A., Da silva G.M., Da silva R.M., De oliveira R.J., Oliveira R.D., De souza J.T., Dueñas M., Evans H., Epifani F., Felipe M.T., Fernández-lópez J., Ferreira B.W., Figueiredo C.N., Filippova N.V., Flores J.A., Gené J., Ghorbani G., Gibertoni T.B., Glushakova A.M., Healy R., Huhndorf S., Iturrieta-gonzález I., Javan-nikkhah M., Juciano R.F., Jurjević Ž., Kachalkin A.V., Keochanpheng K., Krisai-greilhuber I., Li Y., Lima A.A., Machado A.R., Madrid H., Magalhães O.M., Marbach P.A., Melanda G.C., Miller A.N., Mongkolsamrit S., Nascimento R.P., Oliveira T.G., Ordoñez M.E., Orzes R., Palma M.A., Pearce C.J., Pereira O.L., Perrone G., Peterson S.W., Pham T., Piontelli E., Pordel A., Quijada L., Raja H.A., Rosas de paz E., Ryvarden L., Saitta A., Salcedo S.S., Sandoval-denis M., Santos T.A., Seifert K., Silva B.D., Smith M., Soares A.M., Sommai S., Sousa J.O., Suetrong S., Susca A., Tedersoo L., Telleria M., Thanakitpipattana D., Valenzuela-lopez N., Visagie C.M., Zapata M., & Groenewald J.Z. 2018. Fungal Planet description sheets: 785-867. Persoonia, 41: 238-417. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S23436] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=141; TAXLABELS Absidia_cylindrospora_JX961699.1 Absidia_cylindrospora_var._cylindrospora__JN206588.1 'Absidia cylindrospora var. nigra NG_058560.1' Absidia_panacisoli_MF522180.1 'Absidia pseudocylindrospora NG_058561.1' Absidia_psychrophilia_JN206587.1 Absidia_psychrophilia_JN982947.1 Absidia_repens_JN982937.1 'Absidia repens NG_058551.1' Absidia_terrestris_FMR_14989 Amanita_brunneofuliginea_MH486393.1 Amanita_friabilis_KU248121.1 Amanita_olivaceofusca_MH486689.1 Amanita_paludosa_MH100732.1 Amanita_populiphila_KP221304.1 Amanita_pseudovaginata_MH486791.1 Austroboletus_fusisporus_JX889720.1 Austroboletus_gracilis_DQ534624.1 Austroboletus_subvirens_JN378518.1 Boletus_edulis_AF456816.1 Boletus_speciosus_JX290186.1 Bovista_nigrescens_DQ071709.2 Butyriboletus_taughannockensis_MH234473.1 Caloboletus_peckii_MH220330.1 Calvatia_caatinguesis_UFRN_2945 Calvatia_candida_MH916599.1 Calvatia_craniiformis_MH916600.1 Carolinigaster_bonitoi_MH747179 Clathrus_archeri_AJ406479.1 Clathrus_archeri_MH375681.1 Clathrus_columnatus_KF783239.1 Clathrus_delicatus_KF783240.1 Clathrus_natalensis_MH107235 Entoloma_alpicola_AF261302.1 Entoloma_caccabus_GQ289155.1 Entoloma_flavifolium_AF261301.1 Entoloma_nidorosum_AF261296.1 Entoloma_politum_GQ289181.1 Entoloma_rhodopolium_GQ289187.1 'Entoloma rivulare NG_060436.1' Entoloma_sericatum_GQ289189.1 'Entoloma silvae-frondosae MH792065' Entoloma_sinuatum_EU522771.1 Entoloma_sordidulum_GQ289194.1 Entoloma_subclitocyboides_JQ320135.1 Entoloma_tiliae_MH792063 Exsudoporus_frostii_KT002612.1 Fistulinella_olivaceoalba_KF112439.1 Fistulinella_olivaceoalba_MH718396 Fistulinella_prunicolor_JX889648.1 Fomes_fomentarius_DQ208419.1 Ganoderma_chocoense_MH890527 Ganoderma_curtisii_f.sp._meredithae_MH873823.1 Ganoderma_gibbosum_AB733303.1 Ganoderma_lipsiense_MH866629.1 Ganoderma_lucidum_DQ208411.1 Ganoderma_resinaceum_MH867290.1 Ganoderma_tropicum_MH876428.1 Ganoderma_weberianum_MH867289.1 Geastrum_campestre_KC581999.1 Geastrum_coronatum_KC581965.1 Geastrum_fimbriatum_KC582016.1 Geastrum_flexuosum_KC581970.1 Geastrum_floriforme_KC581984.1 Geastrum_lageniforme_KC581966.1 Geastrum_piquiriunense_MH260270 Geastrum_saccatum_KC581969.1 Geastrum_sessile_FJ644508.2 Geastrum_striatum_KC581960.1 Geastrum_xerophilum_KC581975.1 'Heimioporus australis NG_060664.1' Heimioporus_cooloolae_KP327665.1 Henningsia_resupinata_MG255826 Hyphodontia_chinensis_KX857810.1 Hyphodontia_reticulata_KX857813.1 Ileodictyon_gracile_MF503272.1 Inocybe_fuscodisca_AY380376.1 Inocybe_godeyi_AY038316.1 Inocybe_godeyi_FN550897.1 Inocybe_griseolilacina_AY380378.1 Inocybe_hystrix_AY380380.1 Inocybe_leptocystis_AY380384.1 Inocybe_melanopus_AM882725.2 Inocybe_melanopus_MH220276.1 Inocybe_pallidicremea_HQ201357.1 Inocybe_phaeoleuca_08_KJ399958.1 Inocybe_praecox_AY038311.1 Inocybe_roseascens_MG210671.1 Inocybe_whitei_EU486441.1 Inocybe_whitei_FN550915.1 Kwoniella_endophytica_MH237945.1 Kwoniella_mangrovensis_HE996973.1 Kwoniella_pini_KY558354.1 Kwoniella_shandongensis_JQ327851.1 Lanmaoa_pseudosensibilis_MH209247.1 Lepiota_boudieri_EU416281.1 Lepiota_brunneoincarnata_EU416303.1 Lepiota_cristata_EU416292.1 Lepiota_cristata_var._macrospora_JQ664553.1 Lepiota_xanthophylla_DQ071712.2 Leucoagaricus_barssii_DQ911601.1 Mucilopilus_castaneiceps_KT990555.1 Neoboletus_magnificus_KF112324.1 Neoboletus_sanguineus_KT990609.1 Neoboletus_venenatus_KT990613.1 Physisporinus_lineatus_KY131918.1 Physisporinus_lineatus_KY131919.1 Physisporinus_sanguinolentus_JX109843.1 Physisporinus_tibeticus_KY131928.1 'Physisporinus tibeticus NG_060178.1' Protubera_beijingensis_MG430511.1 Protubera_maracuja_KC808514.1 Pseudocolus_fusiformis_AF518641.1 Pulveroboletus_retipes_AF456823.1 Pulveroboletus_retipes_AY612821.1 Pythium_apleroticum_AY598631.2 Pythium_aquatile_HQ665153.1 Pythium_coloratum_AY598633.2 Pythium_diclinum_HQ665282.1 Pythium_dissotocum_HQ665139.1 Pythium_oopapillum_FJ655176.2 Pythium_pachycaule_HQ665169.1 Pythium_sukuiense_HQ665059.1 Pythium_wohlseniorum_MH289800 Schizopora_radula_AJ406466.1 Trichaster_melanocephalus_KC581981.1 Tulostoma_fimbriatum_KU518973.1 Tulostoma_pulchellum_KU518957.1 Tulostoma_striatum_KU518958.1 Tulostoma_winterhoffii_KU518975.1 Tylopilus_sp._KF112423.1 Veloporphyrellus_alpinus_JX984538.1 Veloporphyrellus_conicus_JX984545.1 Veloporphyrellus_pantoleucus_JX984548.1 Veloporphyrellus_pseudovelatus_JX984541.1 Veloporphyrellus_velatus_JX984546.1 Xylodon_flaviporus_MH878361.1 Xylodon_jacobaeus_MH430071 Xylodon_niemelaei_KX857817.1 Xylodon_subflaviporus_KX857815.1 Xylodon_subtropicus_KX857812.1 ; END; BEGIN TREES; TITLE 'Bayesian Stramenopiles, Mucoromycota and Basidiomycota LSU overview phylogeny'; LINK TAXA = Taxa; TREE 'Bayesian Stramenopiles, Mucoromycota and Basidiomycota LSU overview phylogeny' = [&R] (Pythium_apleroticum_AY598631.2:0.003738793,((((((((((Henningsia_resupinata_MG255826:0.005701321,(('Physisporinus tibeticus NG_060178.1':0.001005457,Physisporinus_tibeticus_KY131928.1:9.795792E-4):0.004573438,Physisporinus_sanguinolentus_JX109843.1:0.006095014):0.009511247):0.004942269,(Physisporinus_lineatus_KY131919.1:9.301696E-4,Physisporinus_lineatus_KY131918.1:9.604225E-4):0.012846):0.04907917,(Ganoderma_gibbosum_AB733303.1:0.001233934,(Ganoderma_lucidum_DQ208411.1:0.001019857,Ganoderma_curtisii_f.sp._meredithae_MH873823.1:9.928429E-4):0.002784701,Fomes_fomentarius_DQ208419.1:0.001013404,Ganoderma_lipsiense_MH866629.1:0.005323353,Ganoderma_resinaceum_MH867290.1:0.00170782,Ganoderma_tropicum_MH876428.1:0.002270289,Ganoderma_weberianum_MH867289.1:0.005163701,Ganoderma_chocoense_MH890527:0.003029997):0.04309208):0.01204372,((((((Entoloma_nidorosum_AF261296.1:0.0023979,Entoloma_politum_GQ289181.1:0.002500666):0.003777381,('Entoloma silvae-frondosae MH792065':9.680488E-4,Entoloma_rhodopolium_GQ289187.1:9.667957E-4):0.002835601):0.003347807,(((Entoloma_alpicola_AF261302.1:0.003551731,Entoloma_sordidulum_GQ289194.1:0.01026867):0.004263985,Entoloma_caccabus_GQ289155.1:0.0136576):0.002393257,(Entoloma_sericatum_GQ289189.1:0.008464429,(Entoloma_flavifolium_AF261301.1:0.003102672,((Entoloma_tiliae_MH792063:0.009849818,'Entoloma rivulare NG_060436.1':0.01287312):0.002855789,Entoloma_sinuatum_EU522771.1:0.01106234):0.003967977):0.003942892):0.00293424):0.003725994):0.005896592,Entoloma_subclitocyboides_JQ320135.1:0.01776175):0.03089406,((((((Calvatia_caatinguesis_UFRN_2945:0.005000863,(Calvatia_candida_MH916599.1:0.01554885,Calvatia_craniiformis_MH916600.1:0.007474461):0.003680788):0.007566705,Bovista_nigrescens_DQ071709.2:0.008102734):0.009070369,Leucoagaricus_barssii_DQ911601.1:0.01924126):0.004048616,(((Lepiota_xanthophylla_DQ071712.2:0.005666908,Lepiota_boudieri_EU416281.1:0.01285589):0.002479216,Lepiota_brunneoincarnata_EU416303.1:0.005405105):0.002805313,(Lepiota_cristata_EU416292.1:0.002481862,Lepiota_cristata_var._macrospora_JQ664553.1:0.003763061):0.01475422):0.004037337):0.008387598,((Tulostoma_winterhoffii_KU518975.1:0.00626645,Tulostoma_fimbriatum_KU518973.1:0.007660172):0.003643003,(Tulostoma_pulchellum_KU518957.1:0.003330399,Tulostoma_striatum_KU518958.1:0.005993884):0.008871329):0.006798774):0.01578186,(((Inocybe_praecox_AY038311.1:0.01906774,((((Inocybe_melanopus_MH220276.1:0.005082325,Inocybe_melanopus_AM882725.2:0.009226445):0.02400045,Inocybe_hystrix_AY380380.1:0.02279547,Inocybe_roseascens_MG210671.1:0.0127259):0.003537765,Inocybe_leptocystis_AY380384.1:0.01411593):0.003524452,(Inocybe_godeyi_FN550897.1:9.803643E-4,Inocybe_godeyi_AY038316.1:9.990512E-4):0.006947695,(Inocybe_phaeoleuca_08_KJ399958.1:0.01494481,Inocybe_griseolilacina_AY380378.1:0.01180488):0.004376145):0.00585006):0.01018877,(((Inocybe_whitei_FN550915.1:0.005319607,Inocybe_whitei_EU486441.1:0.002877064):0.007667206,Inocybe_fuscodisca_AY380376.1:0.01097203):0.009041151,Inocybe_pallidicremea_HQ201357.1:0.01009282):0.01358002):0.04285476,(((Amanita_paludosa_MH100732.1:0.007980299,Amanita_friabilis_KU248121.1:0.005127923):0.009154352,Amanita_olivaceofusca_MH486689.1:0.01048296):0.009210565,Amanita_populiphila_KP221304.1:0.008609773,(Amanita_brunneofuliginea_MH486393.1:0.005164138,Amanita_pseudovaginata_MH486791.1:0.006282593):0.003358985):0.1195102):0.01243443):0.01002092):0.01391309,(((((((Austroboletus_fusisporus_JX889720.1:0.1390497,Austroboletus_subvirens_JN378518.1:0.1301577):0.03617169,(Fistulinella_olivaceoalba_KF112439.1:0.002082567,Fistulinella_olivaceoalba_MH718396:0.001276613):0.05601422):0.03509997,Austroboletus_gracilis_DQ534624.1:0.0426222,Tylopilus_sp._KF112423.1:0.06210633):0.006536655,(((Veloporphyrellus_velatus_JX984546.1:0.01041415,Veloporphyrellus_pantoleucus_JX984548.1:0.01109423):0.04604343,(Veloporphyrellus_pseudovelatus_JX984541.1:0.01009892,Veloporphyrellus_alpinus_JX984538.1:0.00368208):0.03303584):0.01120627,Veloporphyrellus_conicus_JX984545.1:0.01977839,(Heimioporus_cooloolae_KP327665.1:0.009738353,'Heimioporus australis NG_060664.1':0.005398999):0.04561012):0.009444971,(Mucilopilus_castaneiceps_KT990555.1:0.0474758,Carolinigaster_bonitoi_MH747179:0.02709407):0.00908008,Fistulinella_prunicolor_JX889648.1:0.02446047):0.008255974,(Pulveroboletus_retipes_AF456823.1:0.00597687,Pulveroboletus_retipes_AY612821.1:0.008543916):0.0159416):0.006209349,Boletus_edulis_AF456816.1:0.01215152,Caloboletus_peckii_MH220330.1:0.01451539):0.007386574,(((Boletus_speciosus_JX290186.1:0.01175414,Butyriboletus_taughannockensis_MH234473.1:0.01546839):0.01253168,Exsudoporus_frostii_KT002612.1:0.01898258):0.01198073,((Neoboletus_magnificus_KF112324.1:0.01090344,Neoboletus_sanguineus_KT990609.1:0.01126097):0.004154175,Neoboletus_venenatus_KT990613.1:0.01095799):0.00495761):0.004158047,Lanmaoa_pseudosensibilis_MH209247.1:0.01279162):0.1012558):0.03007014):0.02814742,((((Schizopora_radula_AJ406466.1:0.002430949,Xylodon_flaviporus_MH878361.1:0.002462775):0.001853412,(Xylodon_subflaviporus_KX857815.1:0.004181118,Xylodon_subtropicus_KX857812.1:0.01082903):0.00385295):0.009303012,Hyphodontia_chinensis_KX857810.1:0.006712846):0.00916882,(Hyphodontia_reticulata_KX857813.1:0.00102516,Xylodon_niemelaei_KX857817.1:9.493314E-4,Xylodon_jacobaeus_MH430071:0.002452335):0.010148):0.1170519):0.03617541,(((Kwoniella_mangrovensis_HE996973.1:0.01693292,Kwoniella_pini_KY558354.1:0.01383776):0.01147265,Kwoniella_endophytica_MH237945.1:0.01278581):0.02737,Kwoniella_shandongensis_JQ327851.1:0.02237521):0.12995):0.01888609,(((((Geastrum_sessile_FJ644508.2:0.001541366,Geastrum_fimbriatum_KC582016.1:0.001691341):0.01826998,(Geastrum_lageniforme_KC581966.1:0.01273268,Geastrum_saccatum_KC581969.1:0.006734459):0.008913949):0.004847642,(Geastrum_xerophilum_KC581975.1:0.01172297,Geastrum_floriforme_KC581984.1:0.006067999,(Geastrum_flexuosum_KC581970.1:0.01960471,Geastrum_piquiriunense_MH260270:0.1855395):0.005968967,Geastrum_campestre_KC581999.1:0.02648744,Trichaster_melanocephalus_KC581981.1:0.02228593):0.005071566):0.01025047,Geastrum_coronatum_KC581965.1:0.009234411):0.005175268,Geastrum_striatum_KC581960.1:0.01234214):0.06906707):0.04259057,(((Pseudocolus_fusiformis_AF518641.1:0.01377923,Clathrus_archeri_AJ406479.1:0.01007262):0.00201442,Clathrus_archeri_MH375681.1:0.001100915):0.01439415,((Clathrus_natalensis_MH107235:0.004703281,Clathrus_columnatus_KF783239.1:0.002876123,Ileodictyon_gracile_MF503272.1:0.02416981,Clathrus_delicatus_KF783240.1:0.02191385):0.007400919,(Protubera_maracuja_KC808514.1:0.006650067,Protubera_beijingensis_MG430511.1:0.02485291):0.0490412):0.01472486):0.09622635):0.2199288,(((Absidia_terrestris_FMR_14989:0.04938005,(Absidia_cylindrospora_var._cylindrospora__JN206588.1:0.001129086,Absidia_cylindrospora_JX961699.1:0.00130714):0.004837312):0.01081431,('Absidia repens NG_058551.1':0.04781258,Absidia_psychrophilia_JN206587.1:0.03679952):0.02314523):0.009518199,((('Absidia cylindrospora var. nigra NG_058560.1':0.0161172,Absidia_repens_JN982937.1:0.02638881):0.01002974,('Absidia pseudocylindrospora NG_058561.1':0.05726915,Absidia_panacisoli_MF522180.1:0.06963204):0.004197198):0.01798519,Absidia_psychrophilia_JN982947.1:0.02520307):0.008679327):0.5293898):0.5602925,((Pythium_coloratum_AY598633.2:8.242727E-4,Pythium_dissotocum_HQ665139.1:8.324052E-4):0.001682451,Pythium_oopapillum_FJ655176.2:0.001940475,Pythium_diclinum_HQ665282.1:8.471476E-4):0.003719009):0.004110209,((Pythium_sukuiense_HQ665059.1:8.311921E-4,Pythium_aquatile_HQ665153.1:8.203721E-4):0.002539662,(Pythium_pachycaule_HQ665169.1:0.00201397,Pythium_wohlseniorum_MH289800:0.00173719):0.004254208):0.002853563); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr115782] END;