#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 10, 2024; 6:02 GMT

TreeBASE (cc) 1994-2008

Study reference:
Mctaggart A.R., & Aime M.C. 2018. The species of Coleosporium (Pucciniales) on Solidago
in North America. Fungal Biology, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S21461]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=77;
        TAXLABELS
            Chryso_arctostaphyli_EF561640
            Chryso_cassandrae_FJ666459
            'Coleosporium asterum DJN141_Solidago_altissima_Japan'
            Coleosporium_asterum_DQ354559
            Coleosporium_asterum_GU058009
            'Coleosporium asterum JF273968_Symphyotrichum_Korea'
            'Coleosporium asterum JF273969_Symphyotrichum_Korea'
            'Coleosporium asterum JF273970_Symphyotrichum_Korea'
            'Coleosporium asterum MCA2623_Asteraceae_Aster'
            'Coleosporium asterum MCA2835_Aster'
            'Coleosporium asterum MCA2845_Solidago'
            'Coleosporium asterum MCA3077_Asteraceae_Solidago'
            'Coleosporium asterum MCA5025_Solidago_IL'
            'Coleosporium asterum MCA5303_Elephantopus_NL'
            'Coleosporium asterum MCA5321_Solidago_rugosa_NL'
            'Coleosporium asterum MCA5415_Solidago_IN'
            'Coleosporium asterum MT268_Solidago_IN'
            'Coleosporium asterum U369_Solidago'
            'Coleosporium asterum U561_Solidago'
            'Coleosporium asterum U627_Solidago'
            'Coleosporium asterum U67_Symphyotrichum'
            'Coleosporium asterum U826_Asteraceae_Solidago'
            'Coleosporium asterum U845_Asteraceae_Solidago'
            'Coleosporium asterum U848_Asteraceae_Aster'
            'Coleosporium cacaliae JF273971_Syneilesis_Korea'
            'Coleosporium delicatulum MCA2846_Asteraceae_Euthamia'
            'Coleosporium delicatulum U347_Solidago'
            'Coleosporium delicatulum U366_Aster'
            'Coleosporium eupatorii MCA4470_Taiwan'
            'Coleosporium eupatorii MCA4471_Taiwan'
            'Coleosporium ipomoeae JRH_143_Convolvulaceae'
            'Coleosporium ipomoeae JRH_168_Convolvulaceae'
            'Coleosporium ipomoeae JRH_195_Convolvulaceae'
            'Coleosporium ipomoeae JRH_216_Convolvulaceae'
            'Coleosporium ipomoeae JRH_465_Convolvulaceae'
            'Coleosporium ipomoeae JRH_544'
            'Coleosporium ipomoeae MCA3853_Convovulaceae'
            'Coleosporium ipomoeae MCA4537_LSU'
            'Coleosporium ipomoeae MCA4545_LSU'
            'Coleosporium ipomoeae U365_Convolvulaceae'
            'Coleosporium plectranthi EF095711_CO14'
            'Coleosporium plumeriae BRIP55387_KM249866'
            'Coleosporium plumeriae GU145555_MCA3480'
            'Coleosporium plumeriae GU145556_U1420'
            'Coleosporium plumeriae MCA3255_Apocynaceae_Plumeria'
            'Coleosporium plumeriae U112_Apocynaceae'
            'Coleosporium plumeriae U266_Apocynaceae'
            'Coleosporium plumeriae U50_Apocynaceae'
            'Coleosporium plumeriae from_MCA_3481_Plumeria'
            Coleosporium_senecionis_AY512840
            'Coleosporium solidaginis DJN150_Solidago_virga_aurea_Japan'
            'Coleosporium solidaginis MCA2621_Solidago'
            'Coleosporium solidaginis MCA2777_Solidago'
            'Coleosporium solidaginis MCA2829_Solidago'
            'Coleosporium solidaginis MCA2831_Solidago'
            'Coleosporium solidaginis MCA2908_Solidago'
            'Coleosporium solidaginis MCA2997_Solidago'
            'Coleosporium solidaginis MCA3221_Solidago'
            'Coleosporium solidaginis MCA3228_Asteraceae'
            'Coleosporium solidaginis MCA3473_Solidago'
            'Coleosporium solidaginis MCA3614_Solidago_MS'
            'Coleosporium solidaginis MCA3715_Solidago_TX'
            'Coleosporium solidaginis MCA3718_Asteraceae_Solidago'
            'Coleosporium solidaginis MCA3816_Asteraceae_Solidago'
            'Coleosporium solidaginis MCA6618_cfSolidago_FL'
            'Coleosporium solidaginis U1169_Solidago'
            'Coleosporium solidaginis U388_Asteraceae_Solidago'
            'Coleosporium solidaginis U389_Asteraceae_Solidago'
            'Coleosporium solidaginis U428_Solidago_MD'
            'Coleosporium solidaginis U430_Solidago_NJ'
            'Coleosporium solidaginis asterum U714_Solidago_flexicaulis_MD'
            Coleosporium_sp_VND030_Evodia_meliofolia
            Coleosporium_tussilaginis_KT199395
            'Coleosporium tussilaginis MCA2392_Asteraceae_Sonchus'
            Coleosporium_vernoniae_MCA3792
            'Coleosporium vernoniae MCA3813_Asteraceae_Elephantopus'
            Coleosporium_xanthoxyli_VND085
            ;
END;

BEGIN TREES;
      TITLE Coleosporium_LSU2_indels;
      LINK TAXA = Taxa;
      TREE con_50_majrule = [&R] ((Chryso_arctostaphyli_EF561640:0.002275985,Chryso_cassandrae_FJ666459:0.003685329):0.01209828,(Coleosporium_sp_VND030_Evodia_meliofolia:0.001536828,(Coleosporium_xanthoxyli_VND085:0.002755288,(('Coleosporium tussilaginis MCA2392_Asteraceae_Sonchus':3.898395E-4,Coleosporium_tussilaginis_KT199395:3.903645E-4,Coleosporium_senecionis_AY512840:4.426371E-4):0.001083867,(('Coleosporium cacaliae JF273971_Syneilesis_Korea':0.007005518,('Coleosporium eupatorii MCA4470_Taiwan':3.965683E-4,'Coleosporium eupatorii MCA4471_Taiwan':3.889528E-4):0.003508306):0.004101819,('Coleosporium plectranthi EF095711_CO14':0.00256391,(((Coleosporium_vernoniae_MCA3792:3.842472E-4,'Coleosporium vernoniae MCA3813_Asteraceae_Elephantopus':3.784787E-4):0.003864648,('Coleosporium delicatulum MCA2846_Asteraceae_Euthamia':3.830995E-4,'Coleosporium delicatulum U347_Solidago':3.870588E-4,'Coleosporium delicatulum U366_Aster':3.854497E-4):0.002628781,('Coleosporium ipomoeae JRH_143_Convolvulaceae':3.912913E-4,'Coleosporium ipomoeae JRH_168_Convolvulaceae':3.902097E-4,'Coleosporium ipomoeae JRH_216_Convolvulaceae':3.854234E-4,'Coleosporium ipomoeae JRH_195_Convolvulaceae':3.87521E-4,'Coleosporium ipomoeae JRH_465_Convolvulaceae':3.82223E-4,'Coleosporium ipomoeae U365_Convolvulaceae':3.887675E-4,'Coleosporium ipomoeae MCA3853_Convovulaceae':3.801659E-4,'Coleosporium ipomoeae JRH_544':3.894465E-4,'Coleosporium plumeriae U50_Apocynaceae':3.935305E-4,'Coleosporium plumeriae BRIP55387_KM249866':3.918664E-4,'Coleosporium plumeriae MCA3255_Apocynaceae_Plumeria':3.852246E-4,'Coleosporium plumeriae U266_Apocynaceae':3.875304E-4,'Coleosporium plumeriae GU145556_U1420':3.766171E-4,'Coleosporium plumeriae U112_Apocynaceae':3.870123E-4,'Coleosporium plumeriae from_MCA_3481_Plumeria':3.885254E-4,'Coleosporium plumeriae GU145555_MCA3480':3.924098E-4,'Coleosporium ipomoeae MCA4545_LSU':3.794659E-4,'Coleosporium ipomoeae MCA4537_LSU':3.74958E-4):0.005513552):0.003037057,(('Coleosporium asterum MCA5415_Solidago_IN':3.850893E-4,'Coleosporium asterum MT268_Solidago_IN':3.948553E-4,'Coleosporium asterum MCA5303_Elephantopus_NL':3.944124E-4,'Coleosporium asterum MCA5321_Solidago_rugosa_NL':3.903596E-4,'Coleosporium asterum DJN141_Solidago_altissima_Japan':3.933784E-4,'Coleosporium asterum MCA5025_Solidago_IL':3.946882E-4,'Coleosporium asterum U369_Solidago':3.929077E-4,'Coleosporium asterum MCA3077_Asteraceae_Solidago':3.852147E-4,'Coleosporium asterum U627_Solidago':3.88477E-4,'Coleosporium asterum U845_Asteraceae_Solidago':3.837807E-4,'Coleosporium asterum U826_Asteraceae_Solidago':3.862569E-4,'Coleosporium asterum MCA2845_Solidago':3.830041E-4,'Coleosporium asterum U561_Solidago':3.952498E-4,('Coleosporium asterum JF273968_Symphyotrichum_Korea':3.929011E-4,'Coleosporium asterum JF273969_Symphyotrichum_Korea':3.885708E-4,'Coleosporium asterum JF273970_Symphyotrichum_Korea':3.906542E-4,'Coleosporium asterum MCA2835_Aster':3.915652E-4,'Coleosporium asterum U67_Symphyotrichum':3.855835E-4,'Coleosporium asterum U848_Asteraceae_Aster':3.897928E-4,'Coleosporium asterum MCA2623_Asteraceae_Aster':3.844114E-4):9.442322E-4):0.002017605,('Coleosporium solidaginis MCA6618_cfSolidago_FL':3.898109E-4,'Coleosporium solidaginis DJN150_Solidago_virga_aurea_Japan':3.79077E-4,'Coleosporium solidaginis U430_Solidago_NJ':3.858897E-4,'Coleosporium solidaginis U428_Solidago_MD':3.825788E-4,'Coleosporium solidaginis asterum U714_Solidago_flexicaulis_MD':3.870658E-4,'Coleosporium solidaginis MCA3614_Solidago_MS':4.159791E-4,'Coleosporium solidaginis MCA3715_Solidago_TX':4.261728E-4,Coleosporium_asterum_DQ354559:3.795278E-4,Coleosporium_asterum_GU058009:3.85575E-4,'Coleosporium solidaginis MCA2777_Solidago':3.825238E-4,'Coleosporium solidaginis MCA2831_Solidago':3.797081E-4,'Coleosporium solidaginis MCA3221_Solidago':3.96556E-4,'Coleosporium solidaginis MCA3228_Asteraceae':3.917555E-4,'Coleosporium solidaginis U1169_Solidago':3.8438E-4,'Coleosporium solidaginis MCA2997_Solidago':3.789458E-4,'Coleosporium solidaginis MCA2829_Solidago':3.82786E-4,'Coleosporium solidaginis U389_Asteraceae_Solidago':3.853187E-4,'Coleosporium solidaginis MCA2908_Solidago':3.85992E-4,'Coleosporium solidaginis U388_Asteraceae_Solidago':3.843737E-4,'Coleosporium solidaginis MCA2621_Solidago':3.796449E-4,'Coleosporium solidaginis MCA3816_Asteraceae_Solidago':3.767565E-4,'Coleosporium solidaginis MCA3718_Asteraceae_Solidago':3.897372E-4,'Coleosporium solidaginis MCA3473_Solidago':3.826038E-4):0.003967312):0.002514647):0.006273436):0.00185406):0.001490501):0.002450622):0.00211113):0.01209828);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr115917]


END;