#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 15, 2024; 19:55 GMT

TreeBASE (cc) 1994-2008

Study reference:
Jerônimo G.H., Jesus A.L., Simmons D.R., James T.Y., & Pires-zottarelli C.L. 2019.
Novel taxa in Cladochytriales (Chytridiomycota): Karlingiella (gen. nov.) and
Nowakowskiella crenulata (sp. nov.). Mycologia, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S23854]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=40;
        TAXLABELS
            Allochytridium_luteum_ATCC60989
            Catenochytridium_sp__JEL145
            Catenochytridium_sp_JEL044
            Cladochytriaceae_sp_JEL072
            Cladochytrium_replicatum_ALJ05
            Cladochytrium_replicatum_CCIBt3845
            Cladochytrium_replicatum_CCIBt4014
            Cladochytrium_replicatum_CCIBt4263
            Cladochytrium_replicatum_JEL180
            Cladochytrium_replicatum_JEL303
            Cladochytrium_sp_BR696
            Cladochytrium_sp_JEL153
            Cladochytrium_sp_SMS013
            Cylindrochytridium_johnstonii_JEL596
            Endochytrium_ramosum_JEL402
            Endochytrium_sp_JEL324
            Nephrochytrium_sp_JEL125
            Nowakowskiella_crenulata_CCIBt4258
            Nowakowskiella_crenulata_CCIBt4259
            Nowakowskiella_elegans_JEL046
            Nowakowskiella_elegans_JEL127
            Nowakowskiella_elegans_JEL157
            Nowakowskiella_elegans_M29
            Nowakowskiella_elegans_UCB50_1
            Nowakowskiella_elongata_ALJ09
            Nowakowskiella_elongata_CCIBt4016
            Nowakowskiella_hemisphaerospora_GHJ13
            Nowakowskiella_multispora_CCIBt3864
            Nowakowskiella_multispora_CCIBt4015
            Nowakowskiella_ramosa_CCIBt4294
            Nowakowskiella_sp_ALJ23
            Nowakowskiella_sp_CCIBt4260
            Nowakowskiella_sp_JH_CC2
            Nowakowskiella_sp_JH_HBR
            Nowakowskiella_sp_JH_SA
            Polychytrium_aggregatum_ALJ30
            Polychytrium_aggregatum_CCIBt4017
            Polychytrium_aggregatum_JEL109
            Septochytrium_sp_JEL177
            Septochytrium_variabile_JEL191
            ;
END;

BEGIN TREES;
      TITLE 'Cladochytriales 18S+ITS+28S rDNA ML';
      LINK TAXA = Taxa;
      TREE bestREP3 = [&R] ((Allochytridium_luteum_ATCC60989:1.0E-8,Endochytrium_sp_JEL324:1.0E-8)100:0.065441725,((Cladochytriaceae_sp_JEL072:0.04283957,(Catenochytridium_sp_JEL044:0.15564186,(Cylindrochytridium_johnstonii_JEL596:0.00548135,(Catenochytridium_sp__JEL145:0.01927535,(Septochytrium_sp_JEL177:1.0E-8,Septochytrium_variabile_JEL191:0.00205042)98:0.01030473)37:0.00177789)90:0.01178686)97:0.04172717)72:0.03371338,(((Polychytrium_aggregatum_CCIBt4017:0.02025069,(Polychytrium_aggregatum_ALJ30:1.0E-8,Polychytrium_aggregatum_JEL109:0.00620724)100:0.03426589)100:0.18268372,(Nephrochytrium_sp_JEL125:0.06449866,((Nowakowskiella_elongata_ALJ09:0.02633527,Nowakowskiella_elongata_CCIBt4016:1.0E-8)100:0.0994424,(Cladochytrium_replicatum_CCIBt4263:0.02449756,((Cladochytrium_replicatum_ALJ05:1.0E-8,Cladochytrium_replicatum_CCIBt3845:1.0E-8)74:0.00543418,(Cladochytrium_replicatum_CCIBt4014:1.0E-8,Cladochytrium_replicatum_JEL180:1.0E-8,Cladochytrium_sp_BR696:1.0E-8,(Cladochytrium_replicatum_JEL303:0.01866452,Cladochytrium_sp_JEL153:1.0E-8,Cladochytrium_sp_SMS013:1.0E-8)99:0.01878526)44:7.0236E-4)98:0.02648196)100:0.1125304)97:0.06620993)99:0.05830197)97:0.07963346,(Endochytrium_ramosum_JEL402:0.03762945,((Nowakowskiella_multispora_CCIBt3864:1.0E-8,Nowakowskiella_multispora_CCIBt4015:1.0E-8)100:0.09680475,(((Nowakowskiella_hemisphaerospora_GHJ13:0.0573277,Nowakowskiella_sp_JH_HBR:0.01981678)96:0.06393019,(Nowakowskiella_sp_JH_CC2:0.04194089,Nowakowskiella_sp_JH_SA:0.03501411)100:0.06379691)82:0.05726854,((Nowakowskiella_sp_CCIBt4260:0.02930625,(Nowakowskiella_crenulata_CCIBt4258:1.0E-8,Nowakowskiella_crenulata_CCIBt4259:1.0E-8)100:0.03474309)100:0.07682709,(Nowakowskiella_ramosa_CCIBt4294:0.01131021,(Nowakowskiella_sp_ALJ23:0.00162667,(Nowakowskiella_elegans_JEL157:1.0E-8,(Nowakowskiella_elegans_JEL046:1.0E-8,Nowakowskiella_elegans_UCB50_1:1.0E-8)51:0.00193365,(Nowakowskiella_elegans_JEL127:0.00192608,Nowakowskiella_elegans_M29:0.01516487)50:0.0017299)53:0.01953409)77:0.05354154)67:0.03013505)75:0.03794713)56:0.00953583)71:0.04097749)45:0.01558459)53:0.01234809)100:0.065441725);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr116438]


END;