#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 19, 2024; 5:15 GMT

TreeBASE (cc) 1994-2008

Study reference:
Del prado R., Buaruang K., Lumbsch H.T., Crespo A., & Divakar P.K. 2019. DNA sequence-based
identification and barcoding of a morphologically highly plastic lichen
forming fungal genus (Parmotrema, Parmeliaceae) from tropics. The Bryologist,
.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S24137]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=62;
        TAXLABELS
            Flavoparmelia_baltimorensis_7660FBalti2
            Flavoparmelia_caperata_10175FCape
            Flavoparmelia_caperata_10176FCape
            'Parmotrema andinum 184PAndi_Brazil'
            Parmotrema_cetratum_7649PCetra
            Parmotrema_cetratum_9425PCetra
            Parmotrema_corniculans_KY35PTin
            Parmotrema_crinitum_6061PCrini
            'Parmotrema cristiferum KY26PCristi_Th'
            'Parmotrema dilatatum Th_3199'
            'Parmotrema endosulphureum 1594i_PEndo_Punctelia_USA'
            'Parmotrema endosulphureum 1714i_PEndo_Costa'
            'Parmotrema endosulphureum 20517b_PEndo_Fiji'
            'Parmotrema endosulphureum 20531j_PEndo_Fiji'
            'Parmotrema explnatum KY31PExpla_Th'
            Parmotrema_fistulatum_7655PFistu
            'Parmotrema gardneri 3203PGard_Th'
            'Parmotrema gardneri PH1PGard_Th'
            'Parmotrema hababianum KY27PHaba_Th'
            Parmotrema_haitiense_7657PHaiti
            Parmotrema_hypoleucinum_7637PHypoleu
            'Parmotrema internexum 78861PInter_India'
            'Parmotrema maclayanum PH2PMacla_Th'
            'Parmotrema nilgherrense 182i_PNilg_India'
            'Parmotrema overremii KY28POver_Th'
            Parmotrema_perforatum_7983PPerfo
            Parmotrema_perlatum_6965PPerla
            'Parmotrema permutatum PH3PPermu_Th'
            Parmotrema_pilosum_7656PPilosu
            'Parmotrema poolii 3204PPoo_Th'
            'Parmotrema praesorediosum 313i_PPra_India'
            'Parmotrema praesorediosum 3209PPra_Th'
            'Parmotrema praesorediosum PH4PPraeso_Th'
            Parmotrema_pseudoreticulatum_7650PPseudo
            'Parmotrema pseudotinctorum 1606i_PPstin_Tenerife'
            'Parmotrema pseudotinctorum 1608i_PPstin_Tenerife'
            'Parmotrema rampoddense PH5PRampod_Th'
            'Parmotrema reticulata KY15PReti_Th'
            Parmotrema_reticulatum_10164PReticu
            Parmotrema_robustum_10166PRobus
            'Parmotrema rubromarginatum KY33PRubro_Th'
            'Parmotrema saccatilobum 2086i_PSac_Japan'
            'Parmotrema saccatilobum 3180i_PSac_Th'
            'Parmotrema saccatilobum 3202PSac_Th'
            'Parmotrema saccatilobum 3205PSac_Th'
            'Parmotrema saccatilobum 3208PSac_Th'
            'Parmotrema saccatilobum 3212i_PSac'
            'Parmotrema sanctiangelii KY24PSancti_Th'
            Parmotrema_sp._3250i
            Parmotrema_ssp1_3197i_PSsp1Th_use
            Parmotrema_subcaperatum_324283PSubca
            'Parmotrema submerrillii Th_3201'
            Parmotrema_subtinctorium_696PSubtin
            'Parmotrema sulphuratum KY32PSulphu_Th'
            Parmotrema_tinctorum_10163PTin
            'Parmotrema tinctorum 20543b_PTin_Fiji'
            'Parmotrema tinctorum 3178i_PTinc_Fiji'
            'Parmotrema tinctorum 3179i_PTin_Fiji'
            'Parmotrema tinctorum 3200i_PTinc_Th'
            'Parmotrema tinctorum aff_3211i_PTin'
            'Parmotrema tinctorum aff_3213i_PTin'
            'Parmotremopsis antillensis 3010i_PAnti'
            ;
END;

BEGIN TREES;
      TITLE Parmotrema_Combined;
      LINK TAXA = Taxa;
      TREE con_50_majrule = [&R] ((Flavoparmelia_caperata_10176FCape:0.205062,(Flavoparmelia_baltimorensis_7660FBalti2:0.083627,Flavoparmelia_caperata_10175FCape:0.035016):0.176964):0.1724975,('Parmotrema internexum 78861PInter_India':0.148505,Parmotrema_sp._3250i:0.538283,Parmotrema_cetratum_9425PCetra:0.030885,Parmotrema_fistulatum_7655PFistu:0.116224,Parmotrema_pilosum_7656PPilosu:0.18525,Parmotrema_subcaperatum_324283PSubca:0.31072,'Parmotrema rampoddense PH5PRampod_Th':0.28184,(Parmotrema_haitiense_7657PHaiti:0.034025,Parmotrema_subtinctorium_696PSubtin:0.021804):0.164956,((Parmotrema_pseudoreticulatum_7650PPseudo:0.136451,(Parmotrema_reticulatum_10164PReticu:0.017096,'Parmotrema reticulata KY15PReti_Th':0.070151):0.090341):0.068428,(Parmotrema_cetratum_7649PCetra:0.039617,(Parmotrema_crinitum_6061PCrini:0.037332,Parmotrema_perlatum_6965PPerla:0.02266):0.151879,(Parmotrema_hypoleucinum_7637PHypoleu:0.084222,Parmotrema_perforatum_7983PPerfo:0.122973):0.337582):0.021229):0.026261,('Parmotrema nilgherrense 182i_PNilg_India':0.29735,('Parmotrema submerrillii Th_3201':0.031369,'Parmotrema poolii 3204PPoo_Th':0.114338,'Parmotrema rubromarginatum KY33PRubro_Th':0.247881,'Parmotrema sanctiangelii KY24PSancti_Th':0.144815,(Parmotrema_corniculans_KY35PTin:0.014654,'Parmotrema maclayanum PH2PMacla_Th':0.014653):0.159064,(Parmotrema_tinctorum_10163PTin:0.035048,('Parmotrema tinctorum 3200i_PTinc_Th':0.080706,'Parmotrema tinctorum 20543b_PTin_Fiji':0.07093):0.024108):0.065148,(('Parmotrema andinum 184PAndi_Brazil':0.273795,('Parmotrema pseudotinctorum 1606i_PPstin_Tenerife':0.259859,'Parmotrema pseudotinctorum 1608i_PPstin_Tenerife':0.082308):0.099862):0.055673,((Parmotrema_ssp1_3197i_PSsp1Th_use:0.043487,'Parmotrema hababianum KY27PHaba_Th':0.09814):0.072971,('Parmotrema permutatum PH3PPermu_Th':0.158928,'Parmotrema saccatilobum 3202PSac_Th':0.077955):0.084014):0.082174):0.025368):0.044296):0.066029,('Parmotremopsis antillensis 3010i_PAnti':0.177154,('Parmotrema endosulphureum 1714i_PEndo_Costa':0.052401,('Parmotrema endosulphureum 20517b_PEndo_Fiji':0.006852,('Parmotrema endosulphureum 20531j_PEndo_Fiji':0.028942,'Parmotrema endosulphureum 1594i_PEndo_Punctelia_USA':0.264778):0.02456):0.032691):0.09905,(Parmotrema_robustum_10166PRobus:0.109282,('Parmotrema dilatatum Th_3199':0.0349,('Parmotrema gardneri 3203PGard_Th':0.146121,('Parmotrema cristiferum KY26PCristi_Th':0.026144,'Parmotrema gardneri PH1PGard_Th':0.014785):0.136478):0.125029):0.074301):0.046835,('Parmotrema sulphuratum KY32PSulphu_Th':0.180519,('Parmotrema saccatilobum 3212i_PSac':0.054975,'Parmotrema tinctorum 3178i_PTinc_Fiji':0.006672,('Parmotrema saccatilobum 2086i_PSac_Japan':0.110637,'Parmotrema saccatilobum 3180i_PSac_Th':0.037991):0.021977,('Parmotrema tinctorum aff_3211i_PTin':0.118971,'Parmotrema tinctorum aff_3213i_PTin':0.041006):0.054211):0.150205):0.029749,(('Parmotrema praesorediosum 313i_PPra_India':0.157509,('Parmotrema praesorediosum 3209PPra_Th':0.020586,'Parmotrema praesorediosum PH4PPraeso_Th':0.013975):0.161962):0.0931,(('Parmotrema explnatum KY31PExpla_Th':0.043244,'Parmotrema overremii KY28POver_Th':0.05884):0.105193,('Parmotrema tinctorum 3179i_PTin_Fiji':0.155462,('Parmotrema saccatilobum 3205PSac_Th':0.066193,'Parmotrema saccatilobum 3208PSac_Th':0.069676):0.060626):0.09403):0.136211):0.034954):0.132259):0.1724975);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr117157]


END;