#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 19, 2024; 5:17 GMT TreeBASE (cc) 1994-2008 Study reference: Zimba P., Shalygin S., & Huang I. 2020. Perforafilum tunnelli gen. & sp. nov., a boring filamentous cyanobacterial toxin producer from Laguna Madre wind tidal sandflats, Texas, USA. Phycologia, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S23654] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=129; TAXLABELS Anabaena_variabilis_NIES_23 Arthrospir_platensis_Paraca Arthrospira_maxima_CS_328 Arthrospira_platensis_C1 Arthrospira_platensis_YZ Arthrospira_sp_PCC_8005 Arthrospira_sp_TJSD091 C_cyanobacteri_IPPAS_B_1203 Calothrix_sp_NIES_2098 Cephalothrix_komarekiana_CCIBt_3523 Chlorogloeopsis_fritschii_PCC6912 Chroococci_cubana_CCALA_043 Chroococci_sp_TS_821 Chroococcidiopsis_sp_CCALA_051 Chroococcidiopsis_thermalis_PCC_7203 Coleofasciculus_chthonoplastes_PCC7420 Cyanobacterium_aponinum_PCC10605 Cyanothece_sp_ATCC51142 Cyanothece_sp_ATCC51472 Cyanothece_sp_CCY0110 Cyanothece_sp_PCC_7425 Dactylococco_salina_PCC8305 Elainella_saxicola_E1 Fische_thermalis_CCMEE_5198 Fischere_major_NIES_592 Fischere_muscicola_PCC7414 Fischere_sp_NIES_4106 Fischere_sp_PCC_9605 Fischere_thermalis_PCC7521 Fischere_thermalis_WC558 Geminocystis_sp_NIES_3708 Geminocystis_sp_NIES_3709 Gloeobacter_kilaueensis_JS1 Gloeocapsa_sp_PCC_7428 Halothece_sp_PCC7418 Hapalosiphon_sp_MRB220 Hydrocoleum_CS_953_1371 Kamptonema_formosum_PCC6407 Leptolyngbya_boryana_IAM_M_101 Leptolyngbya_boryana_NIES_2135 Leptolyngbya_boryana_PCC6306 Leptolyngbya_boryana_dg5 Leptolyngbya_sp_NIES_2104 Leptolyngbya_sp_NIES_3755 Lyngbya_aestuarii_BL_J_Laest3 Lyngbya_sp_PCC_8106 Mastigoclad_repens_PCC10914 Micr_bacterium_UBA9251_509 Micr_vaginatus_FGP_2_ctg221 Microcystis_aeruginosa_NIES_2549 Microcystis_aeruginosa_PCC_7005 Microcystis_aeruginosa_PCC_7941 Microcystis_aeruginosa_PCC_9807 Microcystis_aeruginosa_TAIHU98 Microcystis_sp_0824 Microcystis_sp_T1_4 Moorea_bouillonii_PNG_PNG5 Moorea_producens_3L_scf5201 Moorea_producens_JHB Moorea_producens_PAL_8_15_0 Moorea_producens_PAL_Ga0081 Myxosarcina_sp_GI1 Neosynechococcus_sphagnicola_sy1 Nodularia_sp_NIES_3585 Nostoc_calcicola_FACHB_389 Nostoc_commune_NIES_4072 Nostoc_cycadae_WK_1 Nostoc_flagelliforme_CCNUN1 Nostoc_linckia_z2 Nostoc_punctiforme_PCC73102 Os_cyanobacter_JSC_12_OTA_1 Oscillato_acuminata_PCC6304 Oscillatoria_sp_PCC10802 Oscillatoria_sp_PCC6506 Perforafilum_tunellii_PZ1_O Phormides_priestleyi_BC1401 Phormides_priestleyi_ULC007 Phormides_priestleyi_ULC007_A Phormidi_ambiguum_NIES_2119 Phormidium_tenue_NIES_30 Planktothricoides_sp_SR001 Planktothrix_agardhii_NIVA_CYA_126 Planktothrix_agardhii_NIVA_CYA_15_0 Planktothrix_agardhii_NIVA_CYA_34_0 Planktothrix_agardhii_NIVA_CYA_56_3 Planktothrix_mougeotii_NIVA_CYA_405 Planktothrix_prolifica_NIVA_CYA_406 Planktothrix_prolifica_NIVA_CYA_540 Planktothrix_prolifica_NIVA_CYA_98 Planktothrix_rubescens_NIVA_CYA_407 Planktothrix_rubescens_strain_7821 Planktothrix_sp_PCC_11201 Pleurocapsa_sp_CCALA161 Pleurocapsa_sp_PCC_7319 Pseudanabaena_biceps_PCC7429 Pseudanabaena_sp_BC1403 Pseudanabaena_sp_Ro_Creek43 Pseudanabaena_sp_SR411 Scytonema_sp_NIES_4073 Scytonema_tolypothrichoides_VB_61278 Spirulina_subsalsa_PCC_9445 Stanie_cyanosphaera_PCC7437 Stanieria_sp_NIES_3757 Synechococcus_lividus_PCC6715 Synechococcus_sp_60AY4M2 Synechococcus_sp_63AY4M1 Synechococcus_sp_63AY4M2 Synechococcus_sp_65AY640 Synechococcus_sp_65AY6A5 Synechococcus_sp_65AY6Li Synechococcus_sp_BDU_130192 Synechococcus_sp_JA_3_3Ab Synechococcus_sp_NIES_970 Synechococcus_sp_NKBG_042902 Synechococcus_sp_NKBG15041 Synechococcus_sp_OG1 Synechococcus_sp_PCC_7003 Synechococcus_sp_PCC_7117 Synechococcus_sp_PCC_73109 Synechococcus_sp_PCC_8807 Synechococcus_sp_PCC6312 Synechococcus_sp_PCC7002_CG Synechococcus_sp_PCC7002_SG Thermosynechococcus_elongatus_BP_1 Thermosynechococcus_sp_NK55 Tolypothrix_bouteillei_VB521301 Tolypothrix_campylonemoides_VB511288 Trichodes_erythraeum_IMS101 Xenococcus_sp_PCC_7305 ; END; BEGIN TREES; TITLE PT_rpoC1_rbcX; LINK TAXA = Taxa; TREE Neighbor_Joining = [&R] (Gloeobacter_kilaueensis_JS1:0.148076,((Synechococcus_sp_JA_3_3Ab:0.0,(Synechococcus_sp_63AY4M1:0.0,(Synechococcus_sp_60AY4M2:0.0,(Synechococcus_sp_63AY4M2:0.0,(Synechococcus_sp_65AY640:0.0,(Synechococcus_sp_65AY6Li:0.0,Synechococcus_sp_65AY6A5:0.0):0.0):0.0):0.0):0.0):0.0):0.13427,(Phormidium_tenue_NIES_30:0.13438,(Elainella_saxicola_E1:0.13376,(((Synechococcus_lividus_PCC6715:0.09887,(Thermosynechococcus_sp_NK55:0.01425,Thermosynechococcus_elongatus_BP_1:0.0201):0.08512):0.04098,Synechococcus_sp_PCC6312:0.13146):0.022,(((Os_cyanobacter_JSC_12_OTA_1:0.13079,(Cyanothece_sp_PCC_7425:0.13223,Neosynechococcus_sphagnicola_sy1:0.13326):0.0091):0.00643,(((Phormides_priestleyi_ULC007_A:0.0,Phormides_priestleyi_ULC007:0.0):0.06194,Phormides_priestleyi_BC1401:0.06521):0.05595,((Leptolyngbya_sp_NIES_3755:0.03551,Leptolyngbya_sp_NIES_2104:0.04026):0.02983,(Leptolyngbya_boryana_NIES_2135:-3.0E-5,(Leptolyngbya_boryana_PCC6306:-7.0E-5,(Leptolyngbya_boryana_IAM_M_101:0.0,Leptolyngbya_boryana_dg5:0.0):8.9E-4):3.0E-5):0.07056):0.05211):0.02005):0.01098,((((((Perforafilum_tunellii_PZ1_O:0.14147,Cephalothrix_komarekiana_CCIBt_3523:0.14117):0.02048,Oscillatoria_sp_PCC10802:0.13796):0.00914,Oscillato_acuminata_PCC6304:0.13589):0.00455,((Kamptonema_formosum_PCC6407:0.0,Oscillatoria_sp_PCC6506:0.0):0.1084,(Micr_bacterium_UBA9251_509:0.07292,Micr_vaginatus_FGP_2_ctg221:0.07012):0.03909):0.03587):0.01072,(((((((Scytonema_tolypothrichoides_VB_61278:0.06332,Mastigoclad_repens_PCC10914:0.06015):0.00162,(Tolypothrix_campylonemoides_VB511288:0.03425,Scytonema_sp_NIES_4073:0.02984):0.02244):0.02527,Tolypothrix_bouteillei_VB521301:0.08976):0.00825,(Chlorogloeopsis_fritschii_PCC6912:0.08369,(((Hapalosiphon_sp_MRB220:0.02455,Fischere_sp_NIES_4106:0.02627):0.02336,(((Fischere_thermalis_PCC7521:0.0,Fischere_thermalis_WC558:0.0):0.00266,(Fische_thermalis_CCMEE_5198:0.00209,Fischere_major_NIES_592:0.00119):5.2E-4):0.02051,Fischere_muscicola_PCC7414:0.0166):0.02649):0.01043,Fischere_sp_PCC_9605:0.04952):0.0269):0.00745):0.0058,((Nodularia_sp_NIES_3585:0.08245,((((Nostoc_punctiforme_PCC73102:0.02009,Nostoc_flagelliforme_CCNUN1:0.02029):0.00832,Nostoc_commune_NIES_4072:0.0206):0.03055,(Nostoc_calcicola_FACHB_389:0.0326,Nostoc_linckia_z2:0.03327):0.0207):0.01565,Calothrix_sp_NIES_2098:0.07523):0.00501):0.00413,(Anabaena_variabilis_NIES_23:0.06082,Nostoc_cycadae_WK_1:0.06943):0.01843):0.0137):0.02264,(((Gloeocapsa_sp_PCC_7428:0.04115,Chroococci_sp_TS_821:0.04008):0.02673,C_cyanobacteri_IPPAS_B_1203:0.07276):0.05591,((Chroococcidiopsis_sp_CCALA_051:4.7E-4,Chroococcidiopsis_thermalis_PCC_7203:3.5E-4):4.1E-4,Chroococci_cubana_CCALA_043:0.00129):0.12871):0.00461):0.03177,((((((((((((Microcystis_aeruginosa_NIES_2549:0.00454,Microcystis_sp_T1_4:0.00535):0.00167,(Microcystis_sp_0824:0.00659,(Microcystis_aeruginosa_PCC_7005:0.00598,Microcystis_aeruginosa_PCC_7941:0.00641):0.00261):7.9E-4):0.00319,Microcystis_aeruginosa_PCC_9807:0.01082):0.13208,(Cyanothece_sp_CCY0110:0.04232,(Cyanothece_sp_ATCC51142:0.0,Cyanothece_sp_ATCC51472:0.0):0.03527):0.11399):0.00414,(((Geminocystis_sp_NIES_3709:0.05986,Geminocystis_sp_NIES_3708:0.04775):0.04056,Cyanobacterium_aponinum_PCC10605:0.0945):0.06465,(Stanieria_sp_NIES_3757:0.0357,Stanie_cyanosphaera_PCC7437:0.03107):0.09416):0.01672):0.00886,(((Pleurocapsa_sp_PCC_7319:0.11247,Pleurocapsa_sp_CCALA161:0.10446):0.02035,Myxosarcina_sp_GI1:0.12793):0.01268,Xenococcus_sp_PCC_7305:0.1423):0.01398):0.00823,(Halothece_sp_PCC7418:0.08613,Dactylococco_salina_PCC8305:0.10505):0.06657):0.00154,Spirulina_subsalsa_PCC_9445:0.14502):0.00389,((((((((Microcystis_aeruginosa_TAIHU98:0.0,(Synechococcus_sp_OG1:0.0,(Synechococcus_sp_PCC7002_CG:0.0,Synechococcus_sp_PCC7002_SG:0.0):0.0):0.0):0.00447,Synechococcus_sp_PCC_8807:0.00708):0.00396,Synechococcus_sp_PCC_73109:0.0106):0.00259,Synechococcus_sp_BDU_130192:0.01114):0.00324,Synechococcus_sp_PCC_7117:0.01393):6.7E-4,Synechococcus_sp_NKBG_042902:0.01277):0.01871,Synechococcus_sp_PCC_7003:0.03642):0.06302,(Synechococcus_sp_NIES_970:0.04606,Synechococcus_sp_NKBG15041:0.04533):0.05514):0.06837):0.01211,Planktothricoides_sp_SR001:0.16694):0.00373,((((Planktothrix_sp_PCC_11201:0.02911,(Planktothrix_rubescens_NIVA_CYA_407:0.01564,((Planktothrix_prolifica_NIVA_CYA_406:0.0,(Planktothrix_prolifica_NIVA_CYA_98:0.0,Planktothrix_rubescens_strain_7821:0.0):0.0):0.00726,(Planktothrix_agardhii_NIVA_CYA_126:0.00473,(Planktothrix_agardhii_NIVA_CYA_15_0:0.0,(Planktothrix_mougeotii_NIVA_CYA_405:0.0,(Planktothrix_prolifica_NIVA_CYA_540:0.0,(Planktothrix_agardhii_NIVA_CYA_56_3:0.0,Planktothrix_agardhii_NIVA_CYA_34_0:0.0):0.0):0.0):0.0):0.00434):0.00176):0.00799):0.01149):0.09759,(Lyngbya_sp_PCC_8106:0.00979,Lyngbya_aestuarii_BL_J_Laest3:0.01266):0.11589):0.0066,((Arthrospira_platensis_YZ:0.00636,(((Arthrospira_platensis_C1:0.0,Arthrospira_sp_TJSD091:0.0):3.2E-4,Arthrospira_sp_PCC_8005:5.2E-4):4.5E-4,Arthrospira_maxima_CS_328:0.00135):0.00508):0.01432,Arthrospir_platensis_Paraca:0.02263):0.10732):0.02043,((Hydrocoleum_CS_953_1371:0.04235,Trichodes_erythraeum_IMS101:0.04992):0.10633,Phormidi_ambiguum_NIES_2119:0.1415):0.00839):0.01005):0.00706,((Pseudanabaena_sp_BC1403:0.05979,Pseudanabaena_sp_SR411:0.06466):0.009,(Pseudanabaena_biceps_PCC7429:0.03089,Pseudanabaena_sp_Ro_Creek43:0.02923):0.04215):0.13244):0.00518):0.00316):0.00294,(((Moorea_bouillonii_PNG_PNG5:0.00263,Moorea_producens_PAL_8_15_0:0.0023):0.00767,((Moorea_producens_PAL_Ga0081:0.0,Moorea_producens_3L_scf5201:0.0):0.0138,Moorea_producens_JHB:0.01516):0.00275):0.12039,Coleofasciculus_chthonoplastes_PCC7420:0.11868):0.02263):0.01324):5.3E-4):0.00226):0.02867):0.04653):0.0077935); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr117307] END;