#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 19, 2024; 10:45 GMT TreeBASE (cc) 1994-2008 Study reference: Ramos-silva P., Serrano M., & Henriques A.O. 2019. From root to tips: sporulation evolution and specialization in Bacillus subtilis and the intestinal pathogen Clostridioides difficile. Molecular Biology and Evolution, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S24158] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=258; TAXLABELS 'Acetohalobium arabaticum DSM_5501' 'Acetonema longum DSM_6540' 'Acidaminococcus fermentans DSM_20731' 'Acidaminococcus intestini RyC_MR95' 'Aerococcus urinae ACS_120_V_Col10a' 'Agathobacter rectalis ATCC_33656' 'Alicyclobacillus acidocaldarius acidocaldarius DSM_446' Aliivibrio_salmonicida_LFI1238 Alkaliphilus_metalliredigens_QYMF Alkaliphilus_oremlandii_OhILAs Ammonifex_degensii_KC4 'Amphibacillus xylanus NBRC_15112' 'Anaerobaculum mobile DSM_13181' 'Anaeromyxobacter dehalogenans 2CP_C' Anoxybacillus_flavithermus_WK1 Aquifex_aeolicus_VF5 'Azorhizobium caulinodans ORS_571' 'Bacillus amyloliquefaciens DSM_7' Bacillus_anthracis_Ames Bacillus_atrophaeus_1942 'Bacillus cellulosilyticus DSM_2522' 'Bacillus cereus ATCC_10987' Bacillus_cereus_anthracis_CI 'Bacillus clausii KSM_K16' 'Bacillus coagulans 2_6' 'Bacillus cytotoxicus NVH_391_98' 'Bacillus halodurans C_125' 'Bacillus infantis NRRL_B_14911' 'Bacillus licheniformis DSM_13_ATCC_14580' 'Bacillus megaterium DSM_319' Bacillus_methylotrophicus_FZB42 'Bacillus paralicheniformis ATCC_9945a' Bacillus_pseudofirmus_OF4 'Bacillus pumilus SAFR_032' Bacillus_selenitireducens_MLS10 Bacillus_subtilis_BSn5 Bacillus_subtilis_subtilis_168 Bacillus_thuringiensis_BMB171 'Bacillus toyonensis BCT_7112' Bacillus_weihenstephanensis_KBAB4 Bifidobacterium_bifidum_PRL2010 Bifidobacterium_longum_DJO10A 'Blautia obeum ATCC_29174' Bordetella_parapertussis_Bpp5 Brachyspira_hyodysenteriae_WA1 'Brachyspira intermedia PWS_A' 'Brachyspira murdochii DSM_12563' 'Brevibacillus laterosporus LMG_15441' Brevibacillus_reuszeri Brevibacillus_thermoruber_423 'Brucella abortus bv_1_9_941' 'Brucella melitensis bv_1_16M' 'Brucella suis ATCC_23445' Burkholderia_cepacia_GG4 'Burkholderia pseudomallei NCTC_13179' Caldanaerobacter_subterraneus_tengcongensis_MB4 'Caldicellulosiruptor bescii DSM_6725' Caldicellulosiruptor_hydrothermalis_108 Caldicellulosiruptor_kristjanssonii_I77R1B Caldicellulosiruptor_kronotskyensis_2002 Caldicellulosiruptor_lactoaceticus_6A Caldicellulosiruptor_obsidiansis_OB47 Caldicellulosiruptor_owensensis_OL 'Caldicellulosiruptor saccharolyticus DSM_8903' 'Campylobacter jejuni jejuni 00_2538' Candidatus_Arthromitus_sp_SFB_mouse_Japan Candidatus_Arthromitus_sp_SFB_rat_Yit Candidatus_Desulforudis_audaxviator_MP104C Capnocytophaga_canimorsus_Cc5 'Carboxydothermus hydrogenoformans Z_2901' Carnobacterium_inhibens_gilichinskyi Carnobacterium_maltaromaticum_LMA28 'Clostridium acetobutylicum ATCC_824' 'Clostridium autoethanogenum DSM_10061' 'Clostridium beijerinckii NCIMB_8052' 'Clostridium botulinum A_ATCC_19397' Clostridium_cellulolyticum_H10 Clostridium_cellulovorans_743B 'Clostridium clariflavum DSM_19732' 'Clostridium kluyveri DSM_555' 'Clostridium lentocellum DSM_5427' 'Clostridium litorale DSM_5388' 'Clostridium ljungdahlii DSM_13528' Clostridium_mangenotii_LM2 Clostridium_novyi_NT Clostridium_pasteurianum_BC1 'Clostridium perfringens ATCC_13124' 'Clostridium saccharobutylicum DSM_13864' Clostridium_saccharolyticum_WM1 'Clostridium saccharoperbutylacetonicum N1_4_HMT' 'Clostridium stercorarium stercorarium_DSM_8532' Clostridium_tetani_12124569 'Coprococcus comes ATCC_27758' 'Coprococcus eutactus ATCC_27759' Dehalobacter_sp_CF Dehalobacter_sp_DCA 'Desulfitobacterium dehalogenans ATCC_51507' 'Desulfitobacterium dichloroeliminans LMG_P_21439' 'Desulfitobacterium hafniense DCB_2' Desulfosporosinus_acidiphilus_SJ4 'Desulfosporosinus meridiei DSM_13257' 'Desulfosporosinus orientis DSM_765' 'Desulfotomaculum acetoxidans DSM_771' 'Desulfotomaculum gibsoniae DSM_7213' 'Desulfotomaculum nigrificans CO_1_SRB' 'Desulfotomaculum reducens MI_1' 'Desulfotomaculum ruminis DSM_2154' Desulfovibrio_fairfieldensis Desulfovibrio_vulgaris_DP4 'Desulfurobacterium thermolithotrophum DSM_11699' 'Dictyoglomus thermophilum H_6_12' 'Dictyoglomus turgidum DSM_6724' Enterococcus_casseliflavus_EC20 Enterococcus_faecalis_V583 'Enterococcus hirae ATCC_9790' 'Epulopiscium sp Nt_morphotype_B' 'Escherichia coli O157_H7_Sakai' 'Ethanoligenens harbinense YUAN_3' 'Eubacterium eligens ATCC_27750' 'Eubacterium rectale ATCC_33656' Exiguobacterium_antarcticum_B7 'Exiguobacterium sibiricum 255_15' 'Fervidobacterium nodosum Rt17_B1' 'Filifactor alocis ATCC_35896' 'Fusobacterium hwasookii ChDC_F300' 'Fusobacterium nucleatum nucleatum ATCC_25586' Geobacillus_kaustophilus_HTA426 'Geobacillus thermodenitrificans NG80_2' 'Geobacillus thermoglucosidasius C56_YS93' 'Geobacillus thermoleovorans CCB_US3_UF5' Geobacter_sulfurreducens_PCA 'Gordonibacter pamelaeae 7_10_1_b' 'Haemophilus influenzae Rd_KW20' Halanaerobium_hydrogeniformans 'Halanaerobium praevalens DSM_2228' 'Halobacillus halophilus DSM_2266' 'Halobacteroides halobius DSM_5150' 'Halothermothrix orenii H_168' Helicobacter_pylori_UM032 Heliobacterium_modesticaldum_Ice1 'Kosmotoga olearia TBF_1951' 'Kyrpidia tusciae DSM_2912' Lachnoclostridium_phytofermentans_ISDg 'Lactobacillus brevis ATCC_367' Lactobacillus_casei_BL23 Lactobacillus_plantarum_JDM1 'Lactococcus garvieae ATCC_49156' Lactococcus_lactis_lactis_KF147 'Legionella pneumophila pneumophila ATCC_43290' 'Leptospira interrogans Lai_56601' 'Leptotrichia sp oral_taxon_212' Leuconostoc_carnosum_JB16 Leuconostoc_citreum_KM20 'Leuconostoc mesenteroides mesenteroides ATCC_8293' 'Listeria ivanovii ivanovii PAM_55' 'Listeria monocytogenes 4b_F2365' 'Listeria seeligeri 1_2b_SLCC3954' Lutibacter_sp_LP1 Macrococcus_caseolyticus_JCSC5402 'Mageeibacillus indolicus UPII9_5' 'Mahella australiensis 50_1_BON' 'Megasphaera cerevisiae DSM_20462' 'Megasphaera elsdenii DSM_20460' 'Melioribacter roseus P3M_2' Melissococcus_plutonius_DAT561 'Microcystis aeruginosa NIES_843' 'Moorella thermoacetica ATCC_39073' 'Mycobacterium avium paratuberculosis K_10' Mycobacterium_marinum_M Mycobacterium_tuberculosis_H37Rv 'Myxococcus xanthus DK_1622' 'Natranaerobius thermophilus JW_NM_WN_LF' Neisseria_meningitidis_MC58 'Nocardia brasiliensis ATCC_700358' 'Nocardia cyriacigeorgica GUH_2' 'Nostoc punctiforme PCC_73102' Oceanobacillus_iheyensis_HTE831 'Oenococcus oeni PSU_1' 'Olsenella uli DSM_7084' 'Oscillibacter valericigenes Sjm18_20' 'Paenibacillus larvae larvae DSM_25430' Paenibacillus_mucilaginosus_3016 Paenibacillus_polymyxa_E681 'Paenibacillus terrae HPL_003' Paeniclostridium_sordellii 'Paraclostridium bifermentans ATCC_638' 'Pediococcus claussenii ATCC_BAA_344' 'Pediococcus pentosaceus ATCC_25745' Pelosinus_fermentans_JBW45 Peptoclostridium_difficile_630 Peptoclostridium_difficile_CD196 Peptoclostridium_difficile_M120 Photobacterium_profundum_SS9 'Propionibacterium acidipropionici ATCC_4875' 'Propionibacterium acnes ATCC_11828' 'Proteocatella sphenisci DSM_23131' Pseudomonas_aeruginosa_PAO1 'Pseudomonas fluorescens Pf0_1' Pseudomonas_syringae_syringae_B728a 'Pseudothermotoga elfii DSM_9442_NBRC_107921' 'Pseudothermotoga hypogea DSM_11164_NBRC_106472' Pseudothermotoga_lettingae_TMO Raoultella_ornithinolytica_B6 'Rhizobium leguminosarum bv_viciae_3841' Rhodococcus_erythropolis_CCM2595 'Roseburia hominis A2_183' 'Ruminiclostridium thermocellum ATCC_27405' 'Ruminococcus albus 7_DSM_20455' Ruminococcus_bicirculans 'Ruminococcus flavefaciens ATCC_19208' 'Salmonella enterica enterica Typhimurium_LT2' 'Sebaldella termitidis ATCC_33386' Selenomonas_ruminantium_lactilytica_TAM6421 'Selenomonas sputigena ATCC_35185' 'Shigella flexneri 2a_301' 'Sideroxydans lithotrophicus ES_1' Solibacillus_silvestris_StLB046 'Sporomusa ovata DSM_2662' 'Staphylococcus aureus aureus NCTC_8325' 'Staphylococcus epidermidis ATCC_12228' Staphylococcus_haemolyticus_JCSC1435 Staphylococcus_pasteuri_SP1 'Staphylococcus saprophyticus saprophyticus ATCC_15305' Streptococcus_infantarius_infantarius_CJ18 'Streptococcus parasanguinis ATCC_15912' Streptococcus_pneumoniae_SPN032672 Streptococcus_salivarius_CCHSS3 'Streptomyces collinus Tu_365' 'Streptomyces fulvissimus DSM_40593' 'Streptomyces pratensis ATCC_33331' 'Symbiobacterium thermophilum IAM_14863' 'Syntrophobotulus glycolicus DSM_8271' 'Syntrophomonas wolfei wolfei Goettingen_G311' 'Syntrophothermus lipocalidus DSM_12680' Tepidanaerobacter_acetatoxydans_Re1 'Terrisporobacter glycolicus ATCC_14880_DSM_1288' 'Tetragenococcus halophilus NBRC_12172' 'Thermacetogenium phaeum DSM_12270' 'Thermaerobacter marianensis DSM_12885' Thermincola_potens_JR 'Thermoanaerobacter brockii finnii Ako_1' Thermoanaerobacter_italicus_Ab9 'Thermoanaerobacter pseudethanolicus ATCC_33223' Thermoanaerobacter_wiegelii_Rt8B1 'Thermoanaerobacterium thermosaccharolyticum DSM_571' 'Thermoanaerobacterium xylanolyticum LX_11' Thermobacillus_composti_KWC4 'Thermosediminibacter oceani DSM_16646' Thermosinus_carboxydivorans_Nor1 'Thermosynechococcus elongatus BP_1' Thermus_thermophilus_HB8 'Treponema brennaborense DSM_12168' 'Treponema pedis T_A4' Turicibacter_sanguinis_PC909 'Veillonella parvula DSM_2008' Vibrio_cholerae_IEC224 'Weissella koreensis KACC_15510' 'Xanthomonas campestris pv_campestris_ATCC_33913' ; END; BEGIN TREES; TITLE Firmicutes; LINK TAXA = Taxa; TREE RAxML = [&R] ((('Anaerobaculum mobile DSM_13181':0.710874,Thermus_thermophilus_HB8:0.784789):0.103104,(('Desulfurobacterium thermolithotrophum DSM_11699':0.436732,Aquifex_aeolicus_VF5:0.548821):0.175009,(('Dictyoglomus turgidum DSM_6724':0.060087,'Dictyoglomus thermophilum H_6_12':0.049967):0.624711,('Kosmotoga olearia TBF_1951':0.426672,('Fervidobacterium nodosum Rt17_B1':0.413904,('Pseudothermotoga hypogea DSM_11164_NBRC_106472':0.1992,(Pseudothermotoga_lettingae_TMO:0.003411,'Pseudothermotoga elfii DSM_9442_NBRC_107921':0.00555):0.231877):0.248738):0.118062):0.295898):0.076395):0.041362):0.026053,((((('Melioribacter roseus P3M_2':0.519043,(Lutibacter_sp_LP1:0.216135,Capnocytophaga_canimorsus_Cc5:0.18659):0.511082):0.189421,(('Fusobacterium nucleatum nucleatum ATCC_25586':0.018982,'Fusobacterium hwasookii ChDC_F300':0.011909):0.31719,('Sebaldella termitidis ATCC_33386':0.185584,'Leptotrichia sp oral_taxon_212':0.179147):0.219351):0.380943):0.051804,(('Campylobacter jejuni jejuni 00_2538':0.381811,Helicobacter_pylori_UM032:0.45504):0.717073,('Leptospira interrogans Lai_56601':0.959546,(('Treponema pedis T_A4':0.304668,'Treponema brennaborense DSM_12168':0.298704):0.565478,('Brachyspira murdochii DSM_12563':0.031553,('Brachyspira intermedia PWS_A':0.008911,Brachyspira_hyodysenteriae_WA1:0.009631):0.03069):0.75018):0.066825):0.089263):0.060405):0.05228,(((Desulfovibrio_vulgaris_DP4:0.181178,Desulfovibrio_fairfieldensis:0.235999):0.522801,(Geobacter_sulfurreducens_PCA:0.4162,('Anaeromyxobacter dehalogenans 2CP_C':0.31548,'Myxococcus xanthus DK_1622':0.332793):0.267753):0.072343):0.051563,(('Azorhizobium caulinodans ORS_571':0.255443,('Rhizobium leguminosarum bv_viciae_3841':0.199174,('Brucella abortus bv_1_9_941':0.001302,('Brucella melitensis bv_1_16M':0.007209,'Brucella suis ATCC_23445':0.003307):5.5E-4):0.152273):0.12446):0.485434,((Neisseria_meningitidis_MC58:0.336412,('Sideroxydans lithotrophicus ES_1':0.249551,(Bordetella_parapertussis_Bpp5:0.2499,('Burkholderia pseudomallei NCTC_13179':0.040358,Burkholderia_cepacia_GG4:0.044446):0.160015):0.102842):0.061542):0.148811,('Xanthomonas campestris pv_campestris_ATCC_33913':0.509676,('Legionella pneumophila pneumophila ATCC_43290':0.486648,((Pseudomonas_aeruginosa_PAO1:0.072791,('Pseudomonas fluorescens Pf0_1':0.044766,Pseudomonas_syringae_syringae_B728a:0.041048):0.072028):0.248716,((Photobacterium_profundum_SS9:0.10445,(Vibrio_cholerae_IEC224:0.107728,Aliivibrio_salmonicida_LFI1238:0.101738):0.039024):0.09939,('Haemophilus influenzae Rd_KW20':0.210539,(Raoultella_ornithinolytica_B6:0.025976,('Salmonella enterica enterica Typhimurium_LT2':0.016625,('Escherichia coli O157_H7_Sakai':7.42E-4,'Shigella flexneri 2a_301':0.004246):0.017387):0.01566):0.124349):0.050588):0.193841):0.055675):0.049223):0.055717):0.219517):0.128338):0.091074):0.04493,((('Thermosynechococcus elongatus BP_1':0.224989,('Nostoc punctiforme PCC_73102':0.183963,'Microcystis aeruginosa NIES_843':0.21189):0.08706):0.526227,(('Gordonibacter pamelaeae 7_10_1_b':0.335742,'Olsenella uli DSM_7084':0.417038):0.315159,((Bifidobacterium_bifidum_PRL2010:0.067174,Bifidobacterium_longum_DJO10A:0.075543):0.463476,(('Propionibacterium acidipropionici ATCC_4875':0.113467,'Propionibacterium acnes ATCC_11828':0.115381):0.310559,(('Streptomyces collinus Tu_365':0.06175,('Streptomyces fulvissimus DSM_40593':0.03936,'Streptomyces pratensis ATCC_33331':0.022691):0.045955):0.239212,((Rhodococcus_erythropolis_CCM2595:0.114513,('Nocardia cyriacigeorgica GUH_2':0.056413,'Nocardia brasiliensis ATCC_700358':0.055947):0.07264):0.06314,('Mycobacterium avium paratuberculosis K_10':0.044527,(Mycobacterium_tuberculosis_H37Rv:0.056233,Mycobacterium_marinum_M:0.054839):0.021023):0.170033):0.20812):0.075896):0.07582):0.352224):0.121528):0.050957,(('Thermaerobacter marianensis DSM_12885':0.469795,'Symbiobacterium thermophilum IAM_14863':0.388505):0.112324,((('Kyrpidia tusciae DSM_2912':0.285412,'Alicyclobacillus acidocaldarius acidocaldarius DSM_446':0.364586):0.099287,((('Brevibacillus laterosporus LMG_15441':0.117193,(Brevibacillus_reuszeri:0.079711,Brevibacillus_thermoruber_423:0.05305):0.049697):0.140445,(('Paenibacillus larvae larvae DSM_25430':0.135172,Paenibacillus_mucilaginosus_3016:0.159397):0.042913,(Thermobacillus_composti_KWC4:0.174273,('Paenibacillus terrae HPL_003':0.016251,Paenibacillus_polymyxa_E681:0.010523):0.152257):0.043209):0.118899):0.045107,(((Bacillus_selenitireducens_MLS10:0.197447,'Bacillus cellulosilyticus DSM_2522':0.140928):0.085006,('Bacillus halodurans C_125':0.11703,(Bacillus_pseudofirmus_OF4:0.096475,'Bacillus clausii KSM_K16':0.204133):0.029817):0.059237):0.045043,(('Amphibacillus xylanus NBRC_15112':0.229623,('Halobacillus halophilus DSM_2266':0.178975,Oceanobacillus_iheyensis_HTE831:0.18214):0.041251):0.101771,((('Bacillus pumilus SAFR_032':0.07648,(('Bacillus licheniformis DSM_13_ATCC_14580':0.006024,'Bacillus paralicheniformis ATCC_9945a':0.008191):0.057618,((Bacillus_subtilis_BSn5:0.001327,Bacillus_subtilis_subtilis_168:0.001297):0.020132,(Bacillus_atrophaeus_1942:0.030767,(Bacillus_methylotrophicus_FZB42:0.004769,'Bacillus amyloliquefaciens DSM_7':0.004583):0.033375):0.007886):0.037888):0.023422):0.098553,(('Bacillus infantis NRRL_B_14911':0.120734,'Bacillus coagulans 2_6':0.160343):0.034981,((Anoxybacillus_flavithermus_WK1:0.071461,('Geobacillus thermoglucosidasius C56_YS93':0.040205,('Geobacillus thermodenitrificans NG80_2':0.027138,('Geobacillus thermoleovorans CCB_US3_UF5':0.001207,Geobacillus_kaustophilus_HTA426:0.002741):0.023426):0.062718):0.058424):0.078327,('Bacillus megaterium DSM_319':0.144066,('Bacillus cytotoxicus NVH_391_98':0.021072,((Bacillus_weihenstephanensis_KBAB4:0.015465,'Bacillus toyonensis BCT_7112':0.007039):0.003406,(Bacillus_thuringiensis_BMB171:0.004154,('Bacillus cereus ATCC_10987':0.003141,(Bacillus_cereus_anthracis_CI:5.16E-4,Bacillus_anthracis_Ames:9.41E-4):0.001372):0.005081):0.003427):0.02816):0.124854):0.025962):0.015519):0.014529):0.037093,((Turicibacter_sanguinis_PC909:0.386428,('Exiguobacterium sibiricum 255_15':0.008941,Exiguobacterium_antarcticum_B7:0.017118):0.297258):0.056225,((Solibacillus_silvestris_StLB046:0.220826,(Macrococcus_caseolyticus_JCSC5402:0.157971,('Staphylococcus saprophyticus saprophyticus ATCC_15305':0.073773,('Staphylococcus aureus aureus NCTC_8325':0.062322,(Staphylococcus_haemolyticus_JCSC1435:0.051479,('Staphylococcus epidermidis ATCC_12228':0.046318,Staphylococcus_pasteuri_SP1:0.041548):0.012455):0.014031):0.023149):0.141617):0.17486):0.057822,(('Listeria monocytogenes 4b_F2365':0.012331,('Listeria seeligeri 1_2b_SLCC3954':0.008501,'Listeria ivanovii ivanovii PAM_55':0.010061):0.010296):0.194747,((Carnobacterium_inhibens_gilichinskyi:0.136675,Carnobacterium_maltaromaticum_LMA28:0.107048):0.081624,(('Aerococcus urinae ACS_120_V_Col10a':0.442579,(Lactobacillus_casei_BL23:0.282081,((('Pediococcus claussenii ATCC_BAA_344':0.107842,'Pediococcus pentosaceus ATCC_25745':0.105944):0.137779,('Lactobacillus brevis ATCC_367':0.178286,Lactobacillus_plantarum_JDM1:0.174219):0.04184):0.045218,('Weissella koreensis KACC_15510':0.257423,('Oenococcus oeni PSU_1':0.387986,('Leuconostoc mesenteroides mesenteroides ATCC_8293':0.06589,(Leuconostoc_carnosum_JB16:0.072673,Leuconostoc_citreum_KM20:0.068607):0.035266):0.167871):0.096796):0.131704):0.041892):0.089707):0.043967,(((Melissococcus_plutonius_DAT561:0.1525,Enterococcus_faecalis_V583:0.068278):0.033354,('Enterococcus hirae ATCC_9790':0.084625,('Tetragenococcus halophilus NBRC_12172':0.203537,Enterococcus_casseliflavus_EC20:0.084502):0.029657):0.022068):0.068233,((Lactococcus_lactis_lactis_KF147:0.097835,'Lactococcus garvieae ATCC_49156':0.078925):0.133866,((Streptococcus_pneumoniae_SPN032672:0.05483,'Streptococcus parasanguinis ATCC_15912':0.044382):0.052646,(Streptococcus_infantarius_infantarius_CJ18:0.062608,Streptococcus_salivarius_CCHSS3:0.062971):0.042418):0.112604):0.174821):0.052551):0.042742):0.121905):0.066913):0.023067):0.028891):0.025819):0.029192):0.119989):0.104628):0.105043,((((Thermosinus_carboxydivorans_Nor1:0.137504,('Acetonema longum DSM_6540':0.206062,('Sporomusa ovata DSM_2662':0.157206,Pelosinus_fermentans_JBW45:0.18095):0.036818):0.025925):0.088152,((Selenomonas_ruminantium_lactilytica_TAM6421:0.159388,'Selenomonas sputigena ATCC_35185':0.164525):0.198962,(('Acidaminococcus fermentans DSM_20731':0.091601,'Acidaminococcus intestini RyC_MR95':0.114441):0.29092,('Veillonella parvula DSM_2008':0.252691,('Megasphaera cerevisiae DSM_20462':0.088187,'Megasphaera elsdenii DSM_20460':0.063492):0.192668):0.139411):0.036503):0.043309):0.16609,((Thermincola_potens_JR:0.264193,('Carboxydothermus hydrogenoformans Z_2901':0.383714,((Candidatus_Desulforudis_audaxviator_MP104C:0.318465,Ammonifex_degensii_KC4:0.34909):0.106975,(('Desulfotomaculum acetoxidans DSM_771':0.245767,'Desulfotomaculum gibsoniae DSM_7213':0.242266):0.046016,('Desulfotomaculum nigrificans CO_1_SRB':0.065516,('Desulfotomaculum reducens MI_1':0.127585,'Desulfotomaculum ruminis DSM_2154':0.096483):0.024599):0.16283):0.058273):0.038781):0.038952):0.034622,((('Syntrophomonas wolfei wolfei Goettingen_G311':0.318575,'Syntrophothermus lipocalidus DSM_12680':0.225252):0.20883,('Thermacetogenium phaeum DSM_12270':0.388935,'Moorella thermoacetica ATCC_39073':0.290999):0.068934):0.05299,(Heliobacterium_modesticaldum_Ice1:0.330245,(('Syntrophobotulus glycolicus 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xylanolyticum LX_11':0.044758,'Thermoanaerobacterium thermosaccharolyticum DSM_571':0.041776):0.15352,(Caldanaerobacter_subterraneus_tengcongensis_MB4:0.085514,(Thermoanaerobacter_italicus_Ab9:0.02657,(Thermoanaerobacter_wiegelii_Rt8B1:0.008221,('Thermoanaerobacter brockii finnii Ako_1':1.0E-6,'Thermoanaerobacter pseudethanolicus ATCC_33223':1.0E-6):0.010665):0.01178):0.040022):0.094288):0.168537):0.037071,('Caldicellulosiruptor saccharolyticus DSM_8903':0.051513,((Caldicellulosiruptor_obsidiansis_OB47:0.011819,Caldicellulosiruptor_owensensis_OL:0.017051):0.010323,(('Caldicellulosiruptor bescii DSM_6725':0.006912,Caldicellulosiruptor_kronotskyensis_2002:0.007018):0.008736,(Caldicellulosiruptor_hydrothermalis_108:0.009893,(Caldicellulosiruptor_kristjanssonii_I77R1B:0.00204,Caldicellulosiruptor_lactoaceticus_6A:0.003656):0.009372):0.002442):0.007957):0.04049):0.383085):0.031338,(((Alkaliphilus_oremlandii_OhILAs:0.161521,Alkaliphilus_metalliredigens_QYMF:0.200776):0.124927,(('Filifactor 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clariflavum DSM_19732':0.114047):0.084013):0.063182):0.045097):0.046461):0.050277,((('Clostridium lentocellum DSM_5427':0.190178,'Epulopiscium sp Nt_morphotype_B':0.315914):0.169306,('Coprococcus eutactus ATCC_27759':0.246948,('Eubacterium eligens ATCC_27750':0.245962,((Clostridium_saccharolyticum_WM1:0.179791,Lachnoclostridium_phytofermentans_ISDg:0.226414):0.039275,(('Coprococcus comes ATCC_27758':0.145266,'Blautia obeum ATCC_29174':0.174315):0.035747,('Roseburia hominis A2_183':0.118517,('Eubacterium rectale ATCC_33656':3.55E-4,'Agathobacter rectalis ATCC_33656':3.56E-4):0.13557):0.152698):0.02723):0.037362):0.042856):0.151158):0.145417,((Candidatus_Arthromitus_sp_SFB_rat_Yit:0.061572,Candidatus_Arthromitus_sp_SFB_mouse_Japan:0.071336):0.475737,(Clostridium_cellulovorans_743B:0.275532,(('Clostridium perfringens ATCC_13124':0.151928,('Clostridium saccharobutylicum DSM_13864':0.055324,('Clostridium saccharoperbutylacetonicum N1_4_HMT':0.049451,'Clostridium beijerinckii NCIMB_8052':0.050352):0.032956):0.134159):0.079312,(Clostridium_novyi_NT:0.173231,((Clostridium_pasteurianum_BC1:0.148922,'Clostridium acetobutylicum ATCC_824':0.165514):0.057558,(Clostridium_tetani_12124569:0.198227,('Clostridium botulinum A_ATCC_19397':0.151698,('Clostridium kluyveri DSM_555':0.119065,('Clostridium autoethanogenum DSM_10061':3.77E-4,'Clostridium ljungdahlii DSM_13528':8.51E-4):0.081944):0.09565):0.027383):0.025953):0.019959):0.031184):0.033031):0.06742):0.143041):0.045413):0.037532):0.053107):0.067501):0.046699):0.032039):0.028179):0.038485):0.070683):0.043839):0.026053); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr120531] END;