#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 21, 2024; 0:09 GMT

TreeBASE (cc) 1994-2008

Study reference:
Yamamoto K., Degawa Y., & Yamada A. 2020. Taxonomic study of Endogonaceae in the
Japanese islands: New species of Endogone, Jimgerdemannia, and Vinositunica, gen.
nov. Mycologia, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S23452]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=110;
        TAXLABELS
            'Calcarisporiella thermophila NBRC_33279'
            'Densospora solicarpa DAR69421_AUS'
            'Densospora solicarpa DAR74956_AUS'
            'Echinochlamydosporium variabile LN07_7_4_CHN'
            'Endogone aggregata DAR74991_AUS'
            Endogone_botryocarpus_E14001
            Endogone_corticioides_A11001
            Endogone_corticioides_A12001
            'Endogone corticioides A13001_4'
            Endogone_corticioides_A14002
            'Endogone incrassata EI_11004'
            'Endogone incrassata EI_11005'
            'Endogone incrassata EI_11006'
            'Endogone incrassata EI_12001'
            'Endogone incrassata EI_12004'
            'Endogone incrassata EI_12005'
            'Endogone incrassata T32417_MEX'
            'Endogone incrassata T32492_MEX'
            'Endogone magnospora DAR69441_AUS'
            'Endogone oregonensis AD153_USA'
            'Endogone oregonensis T36235_USA'
            'Endogone pisiformis AD152_USA'
            'Endogone pisiformis DAOM_233144_CAN'
            'Endogone pisiformis EP_11003'
            'Endogone pisiformis EP_12001'
            'Endogone pisiformis EP_12003'
            'Endogone pisiformis EP_12007'
            'Endogone pisiformis EP_12009'
            'Endogone pisiformis EP_12010'
            'Endogone pisiformis MES1451_USA'
            'Endogone pisiformis OSC_80931_USA'
            'Endogone pisiformis T37049_USA'
            'Endogone pisiformis T37093_USA'
            Endogone_sp.__T26631_AUS
            Endogone_sp._2024690_AUS
            Endogone_sp._7567251_AUS
            Endogone_sp._7591853_AUS
            Endogone_sp._7603037_AUS
            Endogone_sp._7648049_AUS
            Endogone_sp._7648847_AUS
            Endogone_sp._7672527_AUS
            Endogone_sp._8092931_AUS
            Endogone_sp._8473986_AUS
            Endogone_sp._MES866_USA
            'Endogone tuberculosa T34145_AUS'
            Jimgerdemannia_ambigua_G14001
            Jimgerdemannia_ambigua_G15001
            'Jimgerdemannia flammicorona AD002_ITA'
            'Jimgerdemannia flammicorona AD239_USA'
            'Jimgerdemannia flammicorona AD244_USA'
            'Jimgerdemannia flammicorona AD245_USA'
            'Jimgerdemannia flammicorona EF_11001'
            'Jimgerdemannia flammicorona EF_11002'
            'Jimgerdemannia flammicorona EF_13002'
            'Jimgerdemannia flammicorona EF_14002'
            'Jimgerdemannia flammicorona EF_15001'
            'Jimgerdemannia flammicorona EF_15002'
            'Jimgerdemannia flammicorona GB716_USA'
            'Jimgerdemannia flammicorona GB737_USA'
            'Jimgerdemannia flammicorona RH932_USA'
            'Jimgerdemannia flammicorona T33845_MEX'
            'Jimgerdemannia flammicorona T33849_MEX'
            'Jimgerdemannia flammicorona T33851_MEX'
            'Jimgerdemannia lactiflua 2190_ITA'
            'Jimgerdemannia lactiflua 9142_UK'
            'Jimgerdemannia lactiflua AD001_ITA'
            'Jimgerdemannia lactiflua AD251_USA'
            'Jimgerdemannia lactiflua AD256_USA'
            'Jimgerdemannia lactiflua EL_10001'
            'Jimgerdemannia lactiflua EL_10002'
            'Jimgerdemannia lactiflua EL_11001'
            'Jimgerdemannia lactiflua EL_11003'
            'Jimgerdemannia lactiflua EL_14001'
            'Jimgerdemannia lactiflua EL_15001'
            'Jimgerdemannia lactiflua EL_15003'
            'Jimgerdemannia lactiflua OSC_80932_USA'
            'Jimgerdemannia lactiflua T32409_MEX'
            'Jimgerdemannia lactiflua T32490_MEX'
            'Jimgerdemannia lactiflua T32544_MEX'
            'Jimgerdemannia lactiflua T32674_MEX'
            Jimgerdemannia_sp._T34758_A_AUS
            Jimgerdemannia_sp._T34758_B_AUS
            Mortierella_chlamydospora_NRRL2769
            Mortierella_verticillata_NRRL6337
            Mucoromycotina_sp._MIB_8354_JF414169
            Mucoromycotina_sp._MIB_8355_JF414147
            Mucoromycotina_sp._MIB_8355_JF414148
            Mucoromycotina_sp._MIB_8355_JF414170
            Mucoromycotina_sp._MIB_8358_JF414152
            Mucoromycotina_sp._MIB_8358_JF414153
            Mucoromycotina_sp._MIB_8362_JF414154
            Mucoromycotina_sp._MIB_8364_JF414149
            Mucoromycotina_sp._MIB_8364_JF414150
            Mucoromycotina_sp._MIB_8365_JF414151
            Mucoromycotina_sp._MIB_8372_JF414142
            Mucoromycotina_sp._MIB_8372_JF414143
            Mucoromycotina_sp._MIB_8372_JF414144
            Mucoromycotina_sp._MIB_8447_JF414145
            Mucoromycotina_sp._MIB_8447_JF414146
            Sphaerocreas_pubescens_NBRC109377
            'Sphaerocreas pubescens SP_0022970'
            Uncultured_EM_EME_12001
            Uncultured_EM_EME_15001
            Vinositunica_ingens_F14001
            Vinositunica_ingens_F15001
            Vinositunica_ingens_F15002
            Vinositunica_radiata_B13001
            Vinositunica_radiata_B13002
            Vinositunica_radiata_B13003
            Vinositunica_radiata_B13004
            ;
END;

BEGIN TREES;
      TITLE Endogonaceae_28S_tef1_rpb1;
      LINK TAXA = Taxa;
      TREE tree_1 = [&R] ((Mortierella_chlamydospora_NRRL2769:0.020805,Mortierella_verticillata_NRRL6337:0.051188):0.118843,(('Calcarisporiella thermophila NBRC_33279':0.041644,'Echinochlamydosporium variabile LN07_7_4_CHN':0.062563):0.231986,((('Densospora solicarpa DAR69421_AUS':0.001777,'Densospora solicarpa DAR74956_AUS':0.006466):0.052297,(Sphaerocreas_pubescens_NBRC109377:2.0E-6,'Sphaerocreas pubescens SP_0022970':0.001576):0.032928):0.265818,((((Jimgerdemannia_ambigua_G14001:2.0E-6,Jimgerdemannia_ambigua_G15001:2.0E-6):0.012841,((Mucoromycotina_sp._MIB_8447_JF414145:2.0E-6,Mucoromycotina_sp._MIB_8447_JF414146:0.001293):0.024897,((Mucoromycotina_sp._MIB_8354_JF414169:0.007835,Mucoromycotina_sp._MIB_8355_JF414170:0.004885):0.028926,((Mucoromycotina_sp._MIB_8355_JF414147:2.0E-6,Mucoromycotina_sp._MIB_8355_JF414148:2.0E-6):0.016779,(Jimgerdemannia_sp._T34758_A_AUS:0.012295,Jimgerdemannia_sp._T34758_B_AUS:0.010285):0.014469):4.88E-4):0.014036):0.018476):0.00406,((('Jimgerdemannia flammicorona T33851_MEX':0.0052,('Jimgerdemannia flammicorona T33849_MEX':0.006419,('Jimgerdemannia flammicorona AD244_USA':7.65E-4,'Jimgerdemannia flammicorona RH932_USA':0.004274):2.0E-6):6.5E-4):0.003267,(('Jimgerdemannia flammicorona GB716_USA':0.006492,('Jimgerdemannia flammicorona AD239_USA':2.0E-6,'Jimgerdemannia flammicorona AD245_USA':2.0E-6):7.48E-4):0.001109,('Jimgerdemannia flammicorona EF_13002':0.002163,('Jimgerdemannia flammicorona EF_11001':9.51E-4,(('Jimgerdemannia lactiflua OSC_80932_USA':0.001362,('Jimgerdemannia flammicorona AD002_ITA':0.001436,'Jimgerdemannia flammicorona EF_14002':2.0E-6):2.0E-6):2.0E-6,('Jimgerdemannia flammicorona EF_15002':2.0E-6,('Jimgerdemannia flammicorona EF_15001':2.0E-6,('Jimgerdemannia flammicorona EF_11002':5.33E-4,'Jimgerdemannia flammicorona GB737_USA':0.003301):2.0E-6):2.0E-6):2.0E-6):0.001429):2.0E-6):4.63E-4):0.001793):0.002209,('Jimgerdemannia flammicorona T33845_MEX':2.0E-6,(('Jimgerdemannia lactiflua T32544_MEX':0.004144,('Jimgerdemannia lactiflua 9142_UK':0.009943,('Jimgerdemannia lactiflua T32409_MEX':0.004961,('Jimgerdemannia lactiflua T32490_MEX':0.005022,'Jimgerdemannia lactiflua T32674_MEX':0.005226):0.003545):8.32E-4):2.0E-6):0.002774,(('Jimgerdemannia lactiflua EL_10002':0.002403,'Jimgerdemannia lactiflua EL_15001':2.0E-6):2.0E-6,('Jimgerdemannia lactiflua EL_11003':4.6E-4,('Jimgerdemannia lactiflua EL_11001':0.001001,(('Jimgerdemannia lactiflua AD001_ITA':2.0E-6,('Jimgerdemannia lactiflua EL_10001':2.0E-6,'Jimgerdemannia lactiflua EL_15003':2.0E-6):2.0E-6):2.0E-6,('Jimgerdemannia lactiflua 2190_ITA':2.0E-6,('Jimgerdemannia lactiflua EL_14001':2.0E-6,('Jimgerdemannia lactiflua AD251_USA':2.0E-6,'Jimgerdemannia lactiflua AD256_USA':2.0E-6):0.001194):0.001107):2.0E-6):2.0E-6):2.0E-6):2.0E-6):5.44E-4):0.007346):0.002945):0.011202):0.041699,(((Vinositunica_ingens_F15002:2.0E-6,(Vinositunica_ingens_F14001:2.0E-6,Vinositunica_ingens_F15001:2.0E-6):0.001545):0.041529,(Vinositunica_radiata_B13001:0.003121,(Vinositunica_radiata_B13002:0.002837,(Vinositunica_radiata_B13003:2.0E-6,Vinositunica_radiata_B13004:9.06E-4):0.004133):0.00283):0.047261):0.071536,((Mucoromycotina_sp._MIB_8372_JF414144:2.0E-6,(Mucoromycotina_sp._MIB_8372_JF414142:2.0E-6,Mucoromycotina_sp._MIB_8372_JF414143:2.0E-6):2.0E-6):0.075296,(((((Uncultured_EM_EME_12001:2.0E-6,Uncultured_EM_EME_15001:0.00139):0.019964,('Endogone corticioides A13001_4':0.00184,(Endogone_corticioides_A11001:2.0E-6,(Endogone_corticioides_A12001:0.001526,Endogone_corticioides_A14002:2.0E-6):2.0E-6):2.0E-6):0.011062):0.004068,(Mucoromycotina_sp._MIB_8358_JF414153:2.0E-6,(Mucoromycotina_sp._MIB_8358_JF414152:2.0E-6,(Mucoromycotina_sp._MIB_8362_JF414154:2.0E-6,(Mucoromycotina_sp._MIB_8364_JF414149:2.0E-6,(Mucoromycotina_sp._MIB_8364_JF414150:0.00128,Mucoromycotina_sp._MIB_8365_JF414151:2.0E-6):0.001281):2.0E-6):0.005066):2.0E-6):0.023009):6.37E-4,(('Endogone pisiformis MES1451_USA':0.005087,('Endogone pisiformis DAOM_233144_CAN':0.001443,'Endogone pisiformis T37049_USA':0.003389):2.0E-6):0.004638,('Endogone pisiformis OSC_80931_USA':0.001579,('Endogone pisiformis EP_11003':2.0E-6,('Endogone pisiformis EP_12003':2.0E-6,(('Endogone pisiformis EP_12001':0.001698,'Endogone pisiformis EP_12009':0.00154):2.0E-6,('Endogone pisiformis EP_12007':2.0E-6,('Endogone pisiformis EP_12010':5.61E-4,('Endogone pisiformis AD152_USA':2.0E-6,'Endogone pisiformis T37093_USA':8.11E-4):0.003637):2.0E-6):4.45E-4):4.46E-4):4.14E-4):0.002103):0.004079):0.015421):0.015774,((('Endogone oregonensis AD153_USA':0.002715,'Endogone oregonensis T36235_USA':2.0E-6):0.012462,(Endogone_botryocarpus_E14001:0.0309,(Endogone_sp._MES866_USA:0.013605,(('Endogone incrassata T32417_MEX':0.005322,'Endogone incrassata T32492_MEX':0.002601):2.0E-6,('Endogone incrassata EI_12004':8.77E-4,(('Endogone incrassata EI_11004':2.0E-6,'Endogone incrassata EI_11005':2.0E-6):2.0E-6,('Endogone incrassata EI_12005':0.002648,('Endogone incrassata EI_11006':2.0E-6,'Endogone incrassata EI_12001':2.0E-6):5.44E-4):5.06E-4):4.17E-4):0.001886):0.005582):0.005781):0.001671):0.006854,('Endogone tuberculosa T34145_AUS':0.024378,(Endogone_sp._8473986_AUS:0.011784,((Endogone_sp._2024690_AUS:0.006703,Endogone_sp._8092931_AUS:0.005858):0.011142,(('Endogone aggregata DAR74991_AUS':2.0E-6,'Endogone magnospora DAR69441_AUS':2.0E-6):0.003644,((Endogone_sp._7648049_AUS:2.0E-6,Endogone_sp._7648847_AUS:2.0E-6):0.006468,(Endogone_sp.__T26631_AUS:0.014764,(Endogone_sp._7603037_AUS:0.001829,(Endogone_sp._7591853_AUS:2.0E-6,(Endogone_sp._7567251_AUS:2.0E-6,Endogone_sp._7672527_AUS:0.001791):0.00226):0.00577):0.002865):0.01025):5.24E-4):0.009758):0.009069):0.006444):0.026173):0.010862):0.021075):0.035003):0.035103):0.117805):0.042834):0.118843);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr121838]


END;