#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 21, 2024; 2:50 GMT TreeBASE (cc) 1994-2008 Study reference: Yamamoto K., Degawa Y., & Yamada A. 2020. Taxonomic study of Endogonaceae in the Japanese islands: New species of Endogone, Jimgerdemannia, and Vinositunica, gen. nov. Mycologia, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S23452] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=150; TAXLABELS 'Calcarisporiella thermophila NBRC_33279' 'Densospora solicarpa DAR69421_AUS' 'Densospora solicarpa DAR74956_AUS' 'Echinochlamydosporium variabile LN07_7_4_CHN' 'Endogone aggregata DAR74991_AUS' Endogone_botryocarpus_E14001 Endogone_corticioides_A11001 Endogone_corticioides_A12001 'Endogone corticioides A13001_4' Endogone_corticioides_A14002 'Endogone incrassata 9044_I_MEX' 'Endogone incrassata EI_11004' 'Endogone incrassata EI_11005' 'Endogone incrassata EI_11006' 'Endogone incrassata EI_12001' 'Endogone incrassata EI_12004' 'Endogone incrassata EI_12005' 'Endogone incrassata T32417_MEX' 'Endogone incrassata T32492_MEX' 'Endogone magnospora DAR69441_AUS' 'Endogone oregonensis AD153_USA' 'Endogone oregonensis OSC_130614_USA' 'Endogone oregonensis T36235_USA' 'Endogone pisiformis AD152_USA' 'Endogone pisiformis DAOM_233144_CAN' 'Endogone pisiformis EP_11003' 'Endogone pisiformis EP_12001' 'Endogone pisiformis EP_12003' 'Endogone pisiformis EP_12007' 'Endogone pisiformis EP_12009' 'Endogone pisiformis EP_12010' 'Endogone pisiformis MES1451_USA' 'Endogone pisiformis OSC_80931_USA' 'Endogone pisiformis T31477_USA' 'Endogone pisiformis T37049_USA' 'Endogone pisiformis T37093_USA' Endogone_sp._2024690_AUS Endogone_sp._7567251_AUS Endogone_sp._7591853__AUS Endogone_sp._7603037_AUS Endogone_sp._7648049_AUS Endogone_sp._7648847_AUS Endogone_sp._7672527_AUS Endogone_sp._8092931_AUS Endogone_sp._8127840_AUS Endogone_sp._MES866_USA Endogone_sp._T13431_AUS Endogone_sp._T14506_AUS Endogone_sp._T26631_AUS Endogone_sp._W5994_SCO 'Endogone tuberculosa T34145_AUS' Jimgerdemannia_ambigua_G14001 Jimgerdemannia_ambigua_G15001 'Jimgerdemannia flammicorona AD002_ITA' 'Jimgerdemannia flammicorona AD239_USA' 'Jimgerdemannia flammicorona AD244_USA' 'Jimgerdemannia flammicorona AD245_USA' 'Jimgerdemannia flammicorona EF_11001' 'Jimgerdemannia flammicorona EF_11002' 'Jimgerdemannia flammicorona EF_13002' 'Jimgerdemannia flammicorona EF_14002' 'Jimgerdemannia flammicorona EF_15001' 'Jimgerdemannia flammicorona EF_15002' 'Jimgerdemannia flammicorona GB716_USA' 'Jimgerdemannia flammicorona GB737_USA' 'Jimgerdemannia flammicorona OSC_111442_USA' 'Jimgerdemannia flammicorona OSC_62257_USA' 'Jimgerdemannia flammicorona OSC_62337_USA' 'Jimgerdemannia flammicorona RH932_USA' 'Jimgerdemannia flammicorona T12525_1_NZL' 'Jimgerdemannia flammicorona T12525_2_NZL' 'Jimgerdemannia flammicorona T33084_MEX' 'Jimgerdemannia flammicorona T33845_MEX' 'Jimgerdemannia flammicorona T33849_MEX' 'Jimgerdemannia flammicorona T33851_MEX' 'Jimgerdemannia lactiflua 111744_1_USA' 'Jimgerdemannia lactiflua 111744_2_USA' 'Jimgerdemannia lactiflua 2190_ITA' 'Jimgerdemannia lactiflua 9142_UK' 'Jimgerdemannia lactiflua AD001_ITA' 'Jimgerdemannia lactiflua AD251_USA' 'Jimgerdemannia lactiflua AD256_USA' 'Jimgerdemannia lactiflua EL_10001' 'Jimgerdemannia lactiflua EL_10002' 'Jimgerdemannia lactiflua EL_11001' 'Jimgerdemannia lactiflua EL_11003' 'Jimgerdemannia lactiflua EL_14001' 'Jimgerdemannia lactiflua EL_15001' 'Jimgerdemannia lactiflua EL_15003' 'Jimgerdemannia lactiflua MA59900_A_SPA' 'Jimgerdemannia lactiflua OSC_111742_USA' 'Jimgerdemannia lactiflua OSC_58852_USA' 'Jimgerdemannia lactiflua OSC_80932_USA' 'Jimgerdemannia lactiflua OSC_80980_2_USA' 'Jimgerdemannia lactiflua OSC_80980_4_USA' 'Jimgerdemannia lactiflua T32409_MEX' 'Jimgerdemannia lactiflua T32490_MEX' 'Jimgerdemannia lactiflua T32530_MEX' 'Jimgerdemannia lactiflua T32544_MEX' 'Jimgerdemannia lactiflua T32674_MEX' Jimgerdemannia_sp._T34758_A_AUS Jimgerdemannia_sp._T34758_B_AUS Mortierella_chlamydospora_NRRL2769 Mortierella_verticillata_NRRL6337 Mucoromycotina_sp._9150.1.B_KR779273 Mucoromycotina_sp._9152.1.D_KR779279 Mucoromycotina_sp._FT2_KM211581 Mucoromycotina_sp._JD92_KJ952217 Mucoromycotina_sp._KX434780 Mucoromycotina_sp._MIB_8353_JF414214 Mucoromycotina_sp._MIB_8354_JF414169 Mucoromycotina_sp._MIB_8354_JF414215 Mucoromycotina_sp._MIB_8355_JF414170 Mucoromycotina_sp._MIB_8355_JF414216 Mucoromycotina_sp._MIB_8355_JF414217 Mucoromycotina_sp._MIB_8355_JF414218 Mucoromycotina_sp._MIB_8357_JF414212 Mucoromycotina_sp._MIB_8358_JF414220 Mucoromycotina_sp._MIB_8360_JF414208 Mucoromycotina_sp._MIB_8363_JF414219 Mucoromycotina_sp._MIB_8372_JF414209 Mucoromycotina_sp._MIB_8372_JF414210 Mucoromycotina_sp._MIB_8447_JF414213 Mucoromycotina_sp._MIB_8448_JF414211 Mucoromycotina_sp._MIB_8478_JF414207 Mucoromycotina_sp._MIB_8783_KC708411 Mucoromycotina_sp._MIB_8792_KC708412 Mucoromycotina_sp._MIB_8797_KC708416 Mucoromycotina_sp._MIB_8827_KC708419 Mucoromycotina_sp._MIB_8841_KC708420 Mucoromycotina_sp._MIB_8861_KC708427 Mucoromycotina_sp._T1.a_KJ921770 Mucoromycotina_sp._WR330.B_KR779282 Mucoromycotina_sp._WR341.b.A_KR779275 Mucoromycotina_sp._WR343.b.B_KR779277 Sphaerocreas_pubescens_NBRC109377 'Sphaerocreas pubescens SP_0022970' Uncultured_EM_EME_12001 Uncultured_EM_EME_15001 Vinositunica_ingens_F14001 Vinositunica_ingens_F15001 Vinositunica_ingens_F15002 Vinositunica_radiata_B13001 Vinositunica_radiata_B13002 Vinositunica_radiata_B13003 Vinositunica_radiata_B13004 Vinositunica_radiata_B14001 uncultured_Mucoromycotina_KC708433 uncultured_Mucoromycotina_KC708437 uncultured_Mucoromycotina_KC708443 ; END; BEGIN TREES; TITLE Endogonaceae_18S_28S; LINK TAXA = Taxa; TREE PAUP_1 = [&R] ((Mortierella_chlamydospora_NRRL2769:0.010626,Mortierella_verticillata_NRRL6337:0.027003):0.0668525,(('Calcarisporiella thermophila NBRC_33279':0.015918,'Echinochlamydosporium variabile LN07_7_4_CHN':0.021158):0.101302,((('Densospora solicarpa DAR69421_AUS':8.28E-4,'Densospora solicarpa DAR74956_AUS':0.001743):0.022241,(Sphaerocreas_pubescens_NBRC109377:3.21E-4,'Sphaerocreas pubescens SP_0022970':0.001628):0.016602):0.147076,(Mucoromycotina_sp._WR330.B_KR779282:0.025705,(((Endogone_sp._2024690_AUS:0.005153,(Endogone_sp._8092931_AUS:0.010493,(Endogone_sp._7603037_AUS:0.003947,((Endogone_sp._T13431_AUS:0.001447,(Uncultured_EM_EME_12001:0.001042,Uncultured_EM_EME_15001:0.001969):0.029926):1.60851E-7,(Endogone_sp._7648847_AUS:0.004525,(Endogone_sp._7648049_AUS:0.00106,(Endogone_sp._8127840_AUS:0.002115,(Endogone_sp._T26631_AUS:0.010699,(Endogone_sp._7672527_AUS:0.008865,('Endogone aggregata DAR74991_AUS':0.0,'Endogone magnospora DAR69441_AUS':0.0):0.004266):0.0):0.009064):0.0):0.0):0.00708):0.001059):0.004589):0.001543):0.006744,((Mucoromycotina_sp._MIB_8360_JF414208:0.001171,('Endogone incrassata T32492_MEX':0.0,('Endogone incrassata 9044_I_MEX':0.0,(Endogone_botryocarpus_E14001:0.015258,(('Endogone oregonensis AD153_USA':0.002308,'Endogone oregonensis T36235_USA':0.003481):0.007392,(Endogone_sp._MES866_USA:0.007885,('Endogone incrassata T32417_MEX':0.004168,('Endogone incrassata EI_11004':0.0,(('Endogone incrassata EI_11005':4.93E-4,'Endogone incrassata EI_12004':0.001466):0.0,('Endogone incrassata EI_12005':0.001961,('Endogone incrassata EI_11006':0.0,'Endogone incrassata EI_12001':0.0):4.87E-4):4.87E-4):0.0):0.002733):0.002329):0.003121):1.71E-4):0.002712):0.0):0.0):0.005996,('Endogone oregonensis OSC_130614_USA':0.00693,((Endogone_corticioides_A12001:0.0,(Endogone_corticioides_A11001:0.0,('Endogone corticioides A13001_4':0.001043,Endogone_corticioides_A14002:5.51E-4):2.46829E-7):1.10942E-6):0.005695,('Endogone pisiformis OSC_80931_USA':0.0,('Endogone pisiformis T31477_USA':0.002627,(('Endogone pisiformis DAOM_233144_CAN':5.17E-4,('Endogone pisiformis MES1451_USA':0.005028,'Endogone pisiformis T37049_USA':0.002579):0.002861):0.003735,(('Endogone pisiformis AD152_USA':0.0,'Endogone pisiformis T37093_USA':0.0):0.003529,('Endogone pisiformis EP_12010':0.0,('Endogone pisiformis EP_12007':0.0,('Endogone pisiformis EP_12009':0.0,('Endogone pisiformis EP_11003':0.0,('Endogone pisiformis EP_12001':0.001673,'Endogone pisiformis EP_12003':0.0):0.0):4.97E-4):4.96E-4):0.0):0.0):0.005067):0.0):0.0):0.014768):0.009889):0.001382):0.002425):0.018682,(((Mucoromycotina_sp._MIB_8354_JF414169:0.004507,Mucoromycotina_sp._MIB_8355_JF414170:0.002574):0.040676000000000004,((Mucoromycotina_sp._MIB_8478_JF414207:0.005296,Mucoromycotina_sp._MIB_8827_KC708419:0.004479):0.013088,(uncultured_Mucoromycotina_KC708443:0.018998,((Mucoromycotina_sp._9152.1.D_KR779279:0.051551,'Endogone tuberculosa T34145_AUS':6.16727E-7):0.010512,(Mucoromycotina_sp._JD92_KJ952217:0.012023,(Mucoromycotina_sp._KX434780:0.0,(Endogone_sp._7567251_AUS:1.30395E-7,Endogone_sp._7591853__AUS:0.001895):0.028167):2.01477E-7):4.18699E-7):0.005048):0.0):0.024833):1.48457E-7,(((Endogone_sp._T14506_AUS:0.014408,(uncultured_Mucoromycotina_KC708437:0.001985,(Mucoromycotina_sp._MIB_8792_KC708412:0.001986,uncultured_Mucoromycotina_KC708433:0.00199):0.0):2.45915E-8):0.0,(Mucoromycotina_sp._MIB_8353_JF414214:0.005491,((Vinositunica_ingens_F15002:0.0,(Vinositunica_ingens_F14001:7.57E-4,Vinositunica_ingens_F15001:0.0):7.91E-4):0.013364,(Vinositunica_radiata_B14001:0.0,(Vinositunica_radiata_B13004:0.001904,(Vinositunica_radiata_B13003:0.001755,(Vinositunica_radiata_B13001:0.003577,Vinositunica_radiata_B13002:0.002802):6.02E-4):7.55744E-8):1.17497E-7):0.031201):0.022719):0.0):0.009492,(Mucoromycotina_sp._MIB_8447_JF414213:0.01197,(('Jimgerdemannia lactiflua AD251_USA':2.56509E-6,(((((Mucoromycotina_sp._MIB_8372_JF414210:0.001165,Mucoromycotina_sp._WR343.b.B_KR779277:0.0):0.0,(Mucoromycotina_sp._MIB_8797_KC708416:0.0,(Mucoromycotina_sp._MIB_8783_KC708411:0.006055,Mucoromycotina_sp._9150.1.B_KR779273:0.002473):0.0):1.14577E-7):1.22958E-8,Mucoromycotina_sp._WR341.b.A_KR779275:0.007381):6.1479E-9,Mucoromycotina_sp._MIB_8372_JF414209:0.002338):6.1479E-9,((Mucoromycotina_sp._MIB_8363_JF414219:0.002358,Mucoromycotina_sp._MIB_8358_JF414220:0.002348):0.002352,(Mucoromycotina_sp._MIB_8355_JF414218:0.003518,(Mucoromycotina_sp._MIB_8355_JF414216:0.001168,(Mucoromycotina_sp._MIB_8357_JF414212:0.004698,(Mucoromycotina_sp._MIB_8355_JF414217:0.00234,(Mucoromycotina_sp._T1.a_KJ921770:0.003253,(Mucoromycotina_sp._MIB_8354_JF414215:0.0,Mucoromycotina_sp._FT2_KM211581:0.005066):0.001264):1.25993E-7):0.0):0.0):0.0):0.0):0.003743):0.003743):0.002689,(((Mucoromycotina_sp._MIB_8448_JF414211:0.005928,Endogone_sp._W5994_SCO:0.001183):0.004631,(Mucoromycotina_sp._MIB_8841_KC708420:0.012243,(Mucoromycotina_sp._MIB_8861_KC708427:1.26363E-7,(Jimgerdemannia_sp._T34758_A_AUS:0.006446,Jimgerdemannia_sp._T34758_B_AUS:0.010728):0.01663):0.007117):0.0):0.00251,(('Jimgerdemannia lactiflua MA59900_A_SPA':0.003474,(('Jimgerdemannia flammicorona OSC_62257_USA':0.004017,(('Jimgerdemannia flammicorona AD244_USA':0.001307,'Jimgerdemannia flammicorona T33851_MEX':0.006962):7.29E-4,('Jimgerdemannia flammicorona RH932_USA':0.001507,'Jimgerdemannia flammicorona T33849_MEX':5.14E-4):2.45839E-8):0.004957):0.0,((('Jimgerdemannia flammicorona GB737_USA':0.0,'Jimgerdemannia flammicorona OSC_62337_USA':0.004003):0.001251,('Jimgerdemannia flammicorona OSC_111442_USA':0.002988,('Jimgerdemannia flammicorona AD239_USA':0.0,'Jimgerdemannia flammicorona AD245_USA':0.0):0.001938):6.79754E-7):9.22E-4,('Jimgerdemannia flammicorona AD002_ITA':0.001149,('Jimgerdemannia flammicorona EF_15001':0.0,(('Jimgerdemannia lactiflua OSC_80932_USA':9.54E-4,('Jimgerdemannia flammicorona EF_14002':0.0,('Jimgerdemannia flammicorona EF_11002':0.0,'Jimgerdemannia flammicorona EF_15002':0.0):0.0):0.0):0.0,(('Jimgerdemannia flammicorona GB716_USA':0.00286,'Jimgerdemannia flammicorona T33845_MEX':0.002335):0.0,('Jimgerdemannia flammicorona EF_11001':5.14E-4,('Jimgerdemannia flammicorona EF_13002':1.63987E-6,'Jimgerdemannia flammicorona T33084_MEX':0.004034):0.002395):0.0):0.001413):7.83E-4):7.82806E-8):0.0):0.001291):0.0):0.003586,(('Jimgerdemannia lactiflua T32530_MEX':0.006239,(Jimgerdemannia_ambigua_G14001:0.0,Jimgerdemannia_ambigua_G15001:0.004501):0.013394):0.0,(('Jimgerdemannia lactiflua 2190_ITA':0.003018,('Jimgerdemannia flammicorona T12525_1_NZL':0.0,(('Jimgerdemannia lactiflua AD001_ITA':0.001319,'Jimgerdemannia lactiflua OSC_80980_2_USA':0.0):6.59E-4,('Jimgerdemannia lactiflua OSC_58852_USA':0.004034,('Jimgerdemannia lactiflua T32409_MEX':0.00255,'Jimgerdemannia lactiflua T32490_MEX':0.005116):0.00222):8.55201E-8):0.0):0.0):0.001121,((('Jimgerdemannia lactiflua 111744_1_USA':0.006057,'Jimgerdemannia lactiflua AD256_USA':0.0):2.28818E-7,('Jimgerdemannia lactiflua 111744_2_USA':0.01019,('Jimgerdemannia lactiflua 9142_UK':0.005229,'Jimgerdemannia lactiflua OSC_111742_USA':0.004032):0.0):0.0):0.0,('Jimgerdemannia lactiflua EL_10002':0.002828,('Jimgerdemannia lactiflua EL_11003':7.48E-4,(('Jimgerdemannia lactiflua T32544_MEX':0.001031,('Jimgerdemannia lactiflua OSC_80980_4_USA':0.0,'Jimgerdemannia lactiflua T32674_MEX':0.0):0.003099):5.06E-4,('Jimgerdemannia lactiflua EL_11001':5.38E-4,(('Jimgerdemannia flammicorona T12525_2_NZL':0.00403,'Jimgerdemannia lactiflua EL_15001':0.0):0.0,('Jimgerdemannia lactiflua EL_10001':0.0,('Jimgerdemannia lactiflua EL_14001':8.95052E-5,'Jimgerdemannia lactiflua EL_15003':0.0):4.02E-4):5.14637E-8):0.0):0.0):2.91E-4):0.0):6.54E-4):0.001028):0.001505):0.001556):0.004015):0.0):0.007906):0.013807):0.011358):0.002001):0.0641265625):0.0083565625):0.016713125):0.03342625); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr121839] END;