#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 11, 2024; 16:49 GMT

TreeBASE (cc) 1994-2008

Study reference:
Susko E., Field C., Blouin C., & Roger A. 2003. Estimation of Rates-Across-Sites
Distributions in Phylogenetic Substitution Models. Systematic Biology, 52(5): 594-603.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S1019]

BEGIN TAXA;
        TITLE  hsp90_ml_distance;
        DIMENSIONS NTAX=37;
        TAXLABELS
            Ajellomyces_capsulatus
            Anopheles_albimanus
            Arabidopsis_thaliana_1
            Arabidopsis_thaliana_2
            Arabidopsis_thaliana_3
            Babesia_bovis
            Brugia_pahangi
            Caenorhabditis_elegans
            Candida_albicans
            Candida_tropicalis
            Cricetulus_griseus
            Danio_rerio
            Dictyostelium_discoideum
            Drosophila_melanogaster
            Eimeria_tennela
            Guillardia_theta
            Homo_sapiens_1
            Homo_sapiens_2
            Ipomoea_nil
            Leishmania_amazonensis
            Leishmania_infantum
            Lycopersic_esculentum
            Neurospora_crassa
            Oryza_sativa
            Plasmodium_falciparum
            Podospora_anserina
            Porphyra_yezoensis
            Rattus_norvegicus
            Saccharomyces_cerevisiae
            Salmo_salar
            Schizosaccharomyces_pombe
            Tetrahymena_thermophila
            Theileria_parva
            Triticum_aestivum
            Trypanosoma_brucei
            Trypanosoma_cruzi
            Zea_mays
            ;
END;

BEGIN TREES;
      TITLE Tb6554;
      LINK TAXA = hsp90_ml_distance;
      TREE hsp90 = [&R] (Babesia_bovis,Theileria_parva,((Tetrahymena_thermophila,(((Leishmania_infantum,Leishmania_amazonensis),(Trypanosoma_cruzi,Trypanosoma_brucei)),(((Schizosaccharomyces_pombe,((Ajellomyces_capsulatus,(Neurospora_crassa,Podospora_anserina)),(Saccharomyces_cerevisiae,(Candida_tropicalis,Candida_albicans)))),((Caenorhabditis_elegans,Brugia_pahangi),((Anopheles_albimanus,Drosophila_melanogaster),((Homo_sapiens_1,Cricetulus_griseus),((Danio_rerio,Salmo_salar),(Homo_sapiens_2,Rattus_norvegicus)))))),(Dictyostelium_discoideum,(((Ipomoea_nil,Zea_mays),((Triticum_aestivum,Oryza_sativa),(Lycopersic_esculentum,(Arabidopsis_thaliana_2,(Arabidopsis_thaliana_3,Arabidopsis_thaliana_1))))),(Guillardia_theta,Porphyra_yezoensis)))))),(Eimeria_tennela,Plasmodium_falciparum)));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr1220]


END;