#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 18, 2024; 12:43 GMT

TreeBASE (cc) 1994-2008

Study reference:
Laroche-johnston F., Bosan R., & Cousineau B. 2020. Group II introns generate functional
chimeric relaxase enzymes with modified specificities through exon shuffling
at both the RNA and DNA level. Molecular Biology and Evolution, 38(3): 1075-1089.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S27000]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=17;
        TAXLABELS
            Enterococcus_faecalis_pTEF4
            'Lactococcus lactis 1064_C11'
            Lactococcus_lactis_1AA59
            Lactococcus_lactis_CF103
            Lactococcus_lactis_CF112
            Lactococcus_lactis_DmW198
            Lactococcus_lactis_HP
            Lactococcus_lactis_KLDS
            Lactococcus_lactis_LMG9447
            Lactococcus_lactis_pAF12
            Lactococcus_lactis_pAH82
            Lactococcus_lactis_pJM4A
            Lactococcus_lactis_pRS01
            Lactococcus_lactis_pSK11P
            Lactococcus_lactis_pUC063C
            Lactococcus_lactis_pUC77B
            'Lactococcus raffinolactis Str_4877'
            ;
END;

BEGIN TREES;
      TITLE Lactococcus_lactis_17_Relaxases_Exon1;
      LINK TAXA = Taxa;
      TREE 'Imported tree 1+' = [&R] (Enterococcus_faecalis_pTEF4:0.18876327,(('Lactococcus raffinolactis Str_4877':0.87399055,(Lactococcus_lactis_pRS01:0.28183337,Lactococcus_lactis_KLDS:0.58828282):0.14110116):0.15755192,((Lactococcus_lactis_LMG9447:0.83998659,(Lactococcus_lactis_DmW198:0.62123763,Lactococcus_lactis_CF112:0.22800196):0.01324984):0.22160852,(Lactococcus_lactis_pSK11P:1.375E-5,((Lactococcus_lactis_pAF12:0.0595515,'Lactococcus lactis 1064_C11':0.03095642):0.11047627,(Lactococcus_lactis_pJM4A:5.17E-6,((Lactococcus_lactis_CF103:0.00539938,(Lactococcus_lactis_pUC77B:0.03956816,Lactococcus_lactis_1AA59:0.00957805):0.02778444):0.0218883,(Lactococcus_lactis_HP:0.02776193,(Lactococcus_lactis_pUC063C:0.06850049,Lactococcus_lactis_pAH82:0.02213623):0.00580247):0.01418924):0.02042447):0.5314216):0.09700163):1.30326087):0.37430732):0.18876327);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr129976]


END;