#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 11, 2024; 7:58 GMT

TreeBASE (cc) 1994-2008

Study reference:
Donoghue M.J., & Mathews S. 1998. Duplicate genes and the root of the angiosperms,
with an example using phytochrome sequences. Molecular Phylogenetics and Evolution,
9(3): 489-500.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S275]

BEGIN TAXA;
        TITLE  TaxonLabelSet9659;
        DIMENSIONS NTAX=30;
        TAXLABELS
            Adiantum_capillus
            Arabidopsis_thaliana_PHYA
            Arabidopsis_thaliana_PHYB
            Arabidopsis_thaliana_PHYC
            Arabidopsis_thaliana_PHYD
            Arabidopsis_thaliana_PHYE
            Avena_sativa_PHYA
            Ceratodon_purpurea
            Cucurbita_sativa_PHYA
            Glycine_max_PHYA
            Glycine_max_PHYB
            Ipomoea_nil_PHYE
            Nicotiana_tabacum_PHYA
            Nicotiana_tabacum_PHYB
            Oryza_sativa_PHYA
            Oryza_sativa_PHYB
            Petroselinum_crispum_PHYA
            Physcomitrella_patens
            Picea_abies
            Pinus_sylvestris
            Pisum_sativa_PHYA
            Pseudotsuga_menziesii
            Psilotum_nudum
            Selaginella_martensii
            Solanum_tuberosum_PHYA
            Solanum_tuberosum_PHYB
            Sorghum_bicolor_PHYA
            Sorghum_bicolor_PHYB
            Sorghum_bicolor_PHYC
            Zea_mays_PHYA
            ;
END;

BEGIN TREES;
      TITLE Tb5010;
      LINK TAXA = TaxonLabelSet9659;
      TREE Fig._3 = [&R] (Physcomitrella_patens,(Ceratodon_purpurea,(Selaginella_martensii,(Adiantum_capillus,(Psilotum_nudum,(((Picea_abies,Pseudotsuga_menziesii),((Arabidopsis_thaliana_PHYC,Sorghum_bicolor_PHYC)Phytochrome_C,((((Arabidopsis_thaliana_PHYA,Cucurbita_sativa_PHYA),(Petroselinum_crispum_PHYA,(Nicotiana_tabacum_PHYA,Solanum_tuberosum_PHYA))),(Glycine_max_PHYA,Pisum_sativa_PHYA)),((Oryza_sativa_PHYA,(Zea_mays_PHYA,Sorghum_bicolor_PHYA)),Avena_sativa_PHYA))Phytochrome_A)),(Pinus_sylvestris,((Arabidopsis_thaliana_PHYE,Ipomoea_nil_PHYE)Phytochrome_E,((((Arabidopsis_thaliana_PHYB,Arabidopsis_thaliana_PHYD),(Nicotiana_tabacum_PHYB,Solanum_tuberosum_PHYB)),Glycine_max_PHYB),(Oryza_sativa_PHYB,Sorghum_bicolor_PHYB))Phytochrome_B))))))));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr1374]


END;