#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 11, 2024; 13:54 GMT

TreeBASE (cc) 1994-2008

Study reference:
Donoghue M.J., & Mathews S. 1998. Duplicate genes and the root of the angiosperms,
with an example using phytochrome sequences. Molecular Phylogenetics and Evolution,
9(3): 489-500.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S275]

BEGIN TAXA;
        TITLE  TaxonLabelSet9660;
        DIMENSIONS NTAX=29;
        TAXLABELS
            Annona_PHYA
            Annona_PHYC
            Aquilegia_PHYA
            Aquilegia_PHYC
            Arabidopsis_thaliana_PHYA
            Arabidopsis_thaliana_PHYC
            Austrobaileya_scandens_PHYA
            Austrobaileya_scandens_PHYC
            Calycanthus_florida_PHYA
            Calycanthus_florida_PHYC
            Canella_winterana_PHYA
            Canella_winterana_PHYC
            Chloranthus_spicatus_PHYA
            Chloranthus_spicatus_PHYC
            Cycas_revoluta
            Ephedra_major
            Ginkgo_biloba
            Hernandia_PHYA
            Hernandia_PHYC
            Magnolia_PHYA
            Magnolia_PHYC
            Nelumbo_PHYA
            Nelumbo_PHYC
            Picea_abies
            Pseudotsuga_menziesii
            Sagittaria_PHYA
            Sagittaria_PHYC
            Sorghum_bicolor_PHYA
            Sorghum_bicolor_PHYC
            ;
END;

BEGIN TREES;
      TITLE Tb5011;
      LINK TAXA = TaxonLabelSet9660;
      TREE Fig._4 = [&R] (((((((Annona_PHYA,Magnolia_PHYA),(Calycanthus_florida_PHYA,Hernandia_PHYA)),Canella_winterana_PHYA),(((Aquilegia_PHYA,(Arabidopsis_thaliana_PHYA,Nelumbo_PHYA)),Austrobaileya_scandens_PHYA),Chloranthus_spicatus_PHYA)),Sagittaria_PHYA),Sorghum_bicolor_PHYA)Phytochrome_A,((((((Annona_PHYC,Magnolia_PHYC),(Calycanthus_florida_PHYC,Hernandia_PHYC)),(((Aquilegia_PHYC,Arabidopsis_thaliana_PHYC),Nelumbo_PHYC),(Austrobaileya_scandens_PHYC,Chloranthus_spicatus_PHYC))),Canella_winterana_PHYC),Sagittaria_PHYC),Sorghum_bicolor_PHYC)Phytochrome_C);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr1375]


END;