#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 15, 2024; 18:50 GMT TreeBASE (cc) 1994-2008 Study reference: Casewell N.R., Wagstaff S.C., Harrison R.A., & Wuster W. 2010. Gene tree parsimony of multi-locus snake venom protein families reveals species tree conflict as a result of multiple parallel gene loss. Molecular Biology and Evolution, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S10791] BEGIN TAXA; TITLE Echis; DIMENSIONS NTAX=130; TAXLABELS Echis_carinatus_sochureki_01A08_ECS00006 Echis_carinatus_sochureki_01G03_ECS00032 Echis_carinatus_sochureki_01H06_ECS00038 Echis_carinatus_sochureki_02A07_ECS00050 Echis_carinatus_sochureki_03A09_ECS00102 Echis_carinatus_sochureki_03C11_ECS00102 Echis_carinatus_sochureki_03G07_ECS00006 Echis_carinatus_sochureki_03G12_ECS00154 Echis_carinatus_sochureki_03H12_ECS00050 Echis_carinatus_sochureki_04C06_ECS00045 Echis_carinatus_sochureki_04D10_ECS00098 Echis_carinatus_sochureki_05F07_ECS00006 Echis_carinatus_sochureki_05F09_ECS00230 Echis_carinatus_sochureki_05H05_ECS00266 Echis_carinatus_sochureki_05H06_ECS00154 Echis_carinatus_sochureki_06F06_ECS00038 Echis_carinatus_sochureki_07F10_ECS00098 Echis_carinatus_sochureki_07G07_ECS00346 Echis_carinatus_sochureki_08C12_ECS00154 Echis_carinatus_sochureki_08G02_ECS00051 Echis_carinatus_sochureki_09A04_ECS00050 Echis_carinatus_sochureki_10F02_ECS00140 Echis_carinatus_sochureki_11A04_ECS00038 Echis_carinatus_sochureki_11B08_ECS00006 Echis_carinatus_sochureki_12F05_ECS00098 Echis_carinatus_sochureki_14H07_ECS00098 Echis_coloratus_01A12_ECO00052 Echis_coloratus_01C12_ECO00041 Echis_coloratus_01D03_ECO00038 Echis_coloratus_03B08_ECO00131 Echis_coloratus_03D01_ECO00127 Echis_coloratus_03F11_ECO00115 Echis_coloratus_04G05_ECO00153 Echis_coloratus_04H11_ECO00143 Echis_coloratus_05F04_ECO00197 Echis_coloratus_05G06_ECO00038 Echis_coloratus_06D10_ECO00052 Echis_coloratus_06E11_ECO00230 Echis_coloratus_07A07_ECO00288 Echis_coloratus_07A09_ECO00069 Echis_coloratus_07D11_ECO00270 Echis_coloratus_07G07_ECO00038 Echis_coloratus_08G05_ECO00038 Echis_coloratus_09D05_ECO00338 Echis_coloratus_09G01_ECO00070 Echis_coloratus_10B04_ECO00153 Echis_coloratus_10H02_ECO00127 Echis_coloratus_11A07_ECO00270 Echis_coloratus_11A11_ECO00115 Echis_coloratus_11C05_ECO00127 Echis_coloratus_11G01_ECO00041 Echis_coloratus_12D11_ECO00070 Echis_coloratus_12F04_ECO00158 Echis_coloratus_12G08_ECO00108 Echis_coloratus_13C08_ECO00108 Echis_coloratus_14H10_ECO00443 Echis_coloratus_15D05_ECO00483 Echis_ocellatus_01A10_EOC00265 Echis_ocellatus_01H11_EOC00211 Echis_ocellatus_02A03_EOC00208 Echis_ocellatus_02C06_EOC00124 Echis_ocellatus_02D05_EOC00193 Echis_ocellatus_03F03_EOC00133 Echis_ocellatus_03G05_EOC00124 Echis_ocellatus_04D06_EOC00087 Echis_ocellatus_04E02_EOC00083 Echis_ocellatus_04H12_EOC00056 Echis_ocellatus_05D01_EOC00038 Echis_ocellatus_06B06_EOC00521 Echis_ocellatus_06D12_EOC00092 Echis_ocellatus_06H03_EOC00490 Echis_ocellatus_07E01_EOC00454 Echis_ocellatus_07H03_EOC00334 Echis_ocellatus_08D01_EOC00334 Echis_ocellatus_08F12_EOC00133 Echis_ocellatus_08G09_EOC00380 Echis_ocellatus_09A05_EOC00372 Echis_ocellatus_09C01_EOC00363 Echis_ocellatus_10C09_EOC00125 Echis_ocellatus_10C11_EOC00305 Echis_ocellatus_10F06_EOC00125 Echis_pyramidum_leakeyi_01A08_EPL00038 Echis_pyramidum_leakeyi_01C07_EPL00038 Echis_pyramidum_leakeyi_01D03_EPL00034 Echis_pyramidum_leakeyi_01E03_EPL00031 Echis_pyramidum_leakeyi_01G07_EPL00016 Echis_pyramidum_leakeyi_02A06_EPL00034 Echis_pyramidum_leakeyi_02G01_EPL00066 Echis_pyramidum_leakeyi_02G06_EPL00060 Echis_pyramidum_leakeyi_02H06_EPL00060 Echis_pyramidum_leakeyi_02H09_EPL00016 Echis_pyramidum_leakeyi_03E03_EPL00010 Echis_pyramidum_leakeyi_04A06_EPL00388 Echis_pyramidum_leakeyi_04C12_EPL00016 Echis_pyramidum_leakeyi_04E11_EPL00031 Echis_pyramidum_leakeyi_04F01_EPL00018 Echis_pyramidum_leakeyi_04F11_EPL00010 Echis_pyramidum_leakeyi_05A07_EPL00030 Echis_pyramidum_leakeyi_05C03_EPL00031 Echis_pyramidum_leakeyi_05E10_EPL00038 Echis_pyramidum_leakeyi_05H10_EPL00016 Echis_pyramidum_leakeyi_06A03_EPL00112 Echis_pyramidum_leakeyi_06D08_EPL00053 Echis_pyramidum_leakeyi_06G12_EPL00010 Echis_pyramidum_leakeyi_07B12_EPL00031 Echis_pyramidum_leakeyi_07E07_EPL00223 Echis_pyramidum_leakeyi_08C11_EPL00109 Echis_pyramidum_leakeyi_08E12_EPL00010 Echis_pyramidum_leakeyi_08F01_EPL00246 Echis_pyramidum_leakeyi_08H03_EPL00236 Echis_pyramidum_leakeyi_09A09_EPL00066 Echis_pyramidum_leakeyi_09D11_EPL00016 Echis_pyramidum_leakeyi_09D12_EPL00282 Echis_pyramidum_leakeyi_09G12_EPL00016 Echis_pyramidum_leakeyi_10A04_EPL00127 Echis_pyramidum_leakeyi_10D02_EPL00282 Echis_pyramidum_leakeyi_10E03_EPL00081 Echis_pyramidum_leakeyi_10H03_EPL00030 Echis_pyramidum_leakeyi_11H03_EPL00010 Echis_pyramidum_leakeyi_11H08_EPL00391 Echis_pyramidum_leakeyi_12C06_EPL00109 Echis_pyramidum_leakeyi_12D09_EPL00053 Echis_pyramidum_leakeyi_12F09_EPL00016 Echis_pyramidum_leakeyi_13B09_EPL00018 Echis_pyramidum_leakeyi_13C01_EPL00038 Echis_pyramidum_leakeyi_14A07_EPL00016 Echis_pyramidum_leakeyi_14E03_EPL00010 Echis_pyramidum_leakeyi_14F02_EPL00112 Echis_pyramidum_leakeyi_14F10_EPL00521 Rattus_norvegicus_51854250 ; END; BEGIN TREES; TITLE 'Echis C-type lectin DNA TB'; LINK TAXA = Echis; TREE 'C-type lectin DNA' = [&R] (Rattus_norvegicus_51854250:1.706919,(((Echis_coloratus_04H11_ECO00143:0.023473,Echis_pyramidum_leakeyi_10E03_EPL00081:0.035971)0.74:0.012643,Echis_coloratus_07A07_ECO00288:0.014442)0.60:0.012931,Echis_carinatus_sochureki_05H05_ECS00266:0.084299)0.89:0.187536,(((((Echis_pyramidum_leakeyi_04A06_EPL00388:0.033273,Echis_carinatus_sochureki_07G07_ECS00346:0.09795)0.94:0.015643,(Echis_ocellatus_08G09_EOC00380:0.006123,Echis_ocellatus_02D05_EOC00193:0.063246)1.00:0.032426)1.00:0.019272,(Echis_coloratus_06D10_ECO00052:0.00557,Echis_coloratus_01A12_ECO00052:0.011583)1.00:0.021285)1.00:0.159404,((((((((((Echis_pyramidum_leakeyi_09D11_EPL00016:0.006071,(Echis_pyramidum_leakeyi_01G07_EPL00016:0.002917,(Echis_pyramidum_leakeyi_14A07_EPL00016:0.00297,Echis_pyramidum_leakeyi_04C12_EPL00016:0.006053)0.96:0.006008)0.33:0.003106)0.94:0.005978,Echis_pyramidum_leakeyi_12F09_EPL00016:0.006031)0.17:0.003008,(Echis_pyramidum_leakeyi_02H09_EPL00016:0.003051,Echis_pyramidum_leakeyi_05H10_EPL00016:0.0061)0.17:0.003172)0.53:0.006213,Echis_pyramidum_leakeyi_09G12_EPL00016:0.008345)1.00:0.050485,(Echis_pyramidum_leakeyi_06D08_EPL00053:0.003014,Echis_pyramidum_leakeyi_12D09_EPL00053:0.006148)1.00:0.036247)1.00:0.031411,((Echis_coloratus_04G05_ECO00153:0.003153,Echis_coloratus_10B04_ECO00153:0.00584)1.00:0.017792,(Echis_coloratus_13C08_ECO00108:0.002968,Echis_coloratus_12G08_ECO00108:0.005901)1.00:0.012818)1.00:0.063199)0.89:0.027993,((Echis_ocellatus_06B06_EOC00521:0.00339,Echis_ocellatus_07E01_EOC00454:0.017026)1.00:0.036188,(Echis_ocellatus_08F12_EOC00133:0.007428,Echis_ocellatus_03F03_EOC00133:0.004681)0.86:0.014419)1.00:0.08125)0.88:0.036158,((Echis_carinatus_sochureki_03H12_ECS00050:0.005912,(Echis_carinatus_sochureki_09A04_ECS00050:0.002949,Echis_carinatus_sochureki_02A07_ECS00050:0.014777)0.37:0.003869)1.00:0.120465,((((Echis_coloratus_03D01_ECO00127:0.002954,Echis_coloratus_10H02_ECO00127:0.00585)0.84:0.005687,Echis_coloratus_11C05_ECO00127:0.008987)1.00:0.056977,Echis_carinatus_sochureki_08G02_ECS00051:0.076437)1.00:0.040531,Echis_coloratus_09D05_ECO00338:0.032708)1.00:0.06957)0.89:0.038428)1.00:0.061488,(((((Echis_ocellatus_04D06_EOC00087:0.007564,Echis_ocellatus_05D01_EOC00038:0.025277)1.00:0.060731,(((((Echis_pyramidum_leakeyi_03E03_EPL00010:0.014888,Echis_pyramidum_leakeyi_14E03_EPL00010:0.00893)0.11:0.00308,(Echis_pyramidum_leakeyi_08E12_EPL00010:0.002958,Echis_pyramidum_leakeyi_04F11_EPL00010:0.005894)0.12:0.00301)0.06:0.002916,Echis_pyramidum_leakeyi_11H03_EPL00010:0.026818)0.15:0.004091,Echis_pyramidum_leakeyi_06G12_EPL00010:0.005738)1.00:0.045406,Echis_coloratus_07A09_ECO00069:0.06607)0.91:0.051401)1.00:0.057157,(Echis_carinatus_sochureki_03C11_ECS00102:0.005414,(Echis_carinatus_sochureki_01G03_ECS00032:0.005597,Echis_carinatus_sochureki_03A09_ECS00102:0.002906)0.40:0.003419)1.00:0.169171)1.00:0.105217,((Echis_pyramidum_leakeyi_09D12_EPL00282:0.006247,Echis_pyramidum_leakeyi_10D02_EPL00282:0.004243)1.00:0.044456,Echis_pyramidum_leakeyi_10A04_EPL00127:0.045999)1.00:0.3687)0.82:0.046768,((Echis_ocellatus_01H11_EOC00211:0.09441,Echis_ocellatus_02A03_EOC00208:0.029177)1.00:0.068702,(Echis_pyramidum_leakeyi_02H06_EPL00060:0.0063,Echis_pyramidum_leakeyi_02G06_EPL00060:0.005198)1.00:0.148235)1.00:0.143817)1.00:0.107015)1.00:0.105831,((((Echis_ocellatus_06H03_EOC00490:0.008416,Echis_ocellatus_09C01_EOC00363:0.020481)1.00:0.020303,Echis_ocellatus_04E02_EOC00083:0.005361)1.00:0.060638,((Echis_coloratus_05F04_ECO00197:0.01145,Echis_coloratus_14H10_ECO00443:0.011895)1.00:0.040866,((Echis_carinatus_sochureki_06F06_ECS00038:0.002885,Echis_carinatus_sochureki_01H06_ECS00038:0.008673)0.34:0.002994,Echis_carinatus_sochureki_11A04_ECS00038:0.005672)1.00:0.055922)0.99:0.02983)1.00:0.232052,((((Echis_coloratus_01C12_ECO00041:0.005939,Echis_coloratus_11G01_ECO00041:0.003733)0.97:0.00761,Echis_coloratus_03B08_ECO00131:0.014395)1.00:0.02332,((Echis_pyramidum_leakeyi_08C11_EPL00109:0.002867,Echis_pyramidum_leakeyi_12C06_EPL00109:0.005661)1.00:0.027871,Echis_pyramidum_leakeyi_07E07_EPL00223:0.031996)1.00:0.028989)1.00:0.036489,(((Echis_carinatus_sochureki_03G07_ECS00006:0.003125,Echis_carinatus_sochureki_01A08_ECS00006:0.00565)0.82:0.005424,Echis_carinatus_sochureki_11B08_ECS00006:0.003053)0.75:0.008502,Echis_carinatus_sochureki_05F07_ECS00006:0.01332)1.00:0.045996)1.00:0.152213)0.51:0.024285)0.88:0.055799)1.00:0.319381,(((((((Echis_pyramidum_leakeyi_01C07_EPL00038:0.004665,((((Echis_pyramidum_leakeyi_13C01_EPL00038:0.003308,(Echis_pyramidum_leakeyi_06A03_EPL00112:0.006406,Echis_pyramidum_leakeyi_14F02_EPL00112:0.003358)1.00:0.016077)0.98:0.006887,((Echis_pyramidum_leakeyi_10H03_EPL00030:0.010349,Echis_pyramidum_leakeyi_05A07_EPL00030:0.003047)1.00:0.009676,Echis_pyramidum_leakeyi_05E10_EPL00038:0.0032)0.96:0.009171)0.82:0.006527,(Echis_pyramidum_leakeyi_04F01_EPL00018:0.003964,Echis_pyramidum_leakeyi_01A08_EPL00038:0.009283)0.81:0.006511)0.31:0.0032,Echis_pyramidum_leakeyi_13B09_EPL00018:0.003334)0.95:0.008444)1.00:0.031671,(((Echis_coloratus_07G07_ECO00038:0.004639,Echis_coloratus_08G05_ECO00038:0.005539)0.61:0.006368,Echis_coloratus_01D03_ECO00038:0.005034)0.50:0.00498,Echis_coloratus_05G06_ECO00038:0.003257)1.00:0.054572)1.00:0.069345,(Echis_ocellatus_04H12_EOC00056:0.016292,((Echis_ocellatus_06D12_EOC00092:0.009265,(Echis_ocellatus_07H03_EOC00334:0.006154,Echis_ocellatus_10C11_EOC00305:0.009306)0.34:0.003562)0.40:0.006325,Echis_ocellatus_08D01_EOC00334:0.004488)0.57:0.010669)1.00:0.08636)0.74:0.0279,(((Echis_carinatus_sochureki_04D10_ECS00098:0.011408,Echis_carinatus_sochureki_14H07_ECS00098:0.003527)0.72:0.006392,(Echis_carinatus_sochureki_12F05_ECS00098:0.00631,Echis_carinatus_sochureki_07F10_ECS00098:0.003169)0.96:0.006501)0.74:0.013985,Echis_carinatus_sochureki_10F02_ECS00140:0.031795)1.00:0.062249)1.00:0.062775,(Echis_ocellatus_09A05_EOC00372:0.094013,Echis_coloratus_12F04_ECO00158:0.059375)0.95:0.029836)1.00:0.159391,(Echis_coloratus_06E11_ECO00230:0.018244,Echis_carinatus_sochureki_04C06_ECS00045:0.077015)1.00:0.24632)0.99:0.078349,(((((((Echis_pyramidum_leakeyi_11H08_EPL00391:0.009255,Echis_pyramidum_leakeyi_05C03_EPL00031:0.006195)0.16:0.0032,(Echis_pyramidum_leakeyi_01E03_EPL00031:0.003138,Echis_pyramidum_leakeyi_14F10_EPL00521:0.03542)0.15:0.00319)0.32:0.0051,(Echis_pyramidum_leakeyi_07B12_EPL00031:0.003533,Echis_pyramidum_leakeyi_04E11_EPL00031:0.011337)0.52:0.006259)0.76:0.011916,((Echis_coloratus_03F11_ECO00115:0.006212,Echis_coloratus_11A11_ECO00115:0.003392)1.00:0.07639,Echis_carinatus_sochureki_05F09_ECS00230:0.071119)1.00:0.051913)0.48:0.011534,Echis_pyramidum_leakeyi_08F01_EPL00246:0.033872)0.61:0.019574,Echis_ocellatus_01A10_EOC00265:0.050384)1.00:0.224868,((((((Echis_coloratus_09G01_ECO00070:0.003815,((Echis_coloratus_07D11_ECO00270:0.003307,Echis_coloratus_11A07_ECO00270:0.003034)1.00:0.018514,Echis_coloratus_12D11_ECO00070:0.003659)0.75:0.006339)1.00:0.017269,((Echis_pyramidum_leakeyi_08H03_EPL00236:0.040447,Echis_pyramidum_leakeyi_02G01_EPL00066:0.005109)0.62:0.005538,Echis_pyramidum_leakeyi_09A09_EPL00066:0.003308)1.00:0.031495)1.00:0.048649,(Echis_ocellatus_03G05_EOC00124:0.00401,Echis_ocellatus_02C06_EOC00124:0.012253)1.00:0.081429)0.98:0.033552,Echis_coloratus_15D05_ECO00483:0.095914)0.78:0.024583,(Echis_carinatus_sochureki_05H06_ECS00154:0.010067,(Echis_carinatus_sochureki_08C12_ECS00154:0.00333,Echis_carinatus_sochureki_03G12_ECS00154:0.006312)0.92:0.010031)1.00:0.212468)1.00:0.056737,((Echis_ocellatus_10F06_EOC00125:0.017262,Echis_ocellatus_10C09_EOC00125:0.020662)0.96:0.024499,(Echis_pyramidum_leakeyi_01D03_EPL00034:0.005478,Echis_pyramidum_leakeyi_02A06_EPL00034:0.003307)1.00:0.091289)1.00:0.123301)1.00:0.092879)0.99:0.09631)0.90:0.05254)0.86:0.199682); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr21097] END;