#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 15, 2024; 18:31 GMT

TreeBASE (cc) 1994-2008

Study reference:
Casewell N.R., Wagstaff S.C., Harrison R.A., & Wuster W. 2010. Gene tree parsimony
of multi-locus snake venom protein families reveals species tree conflict as a
result of multiple parallel gene loss. Molecular Biology and Evolution, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S10791]

BEGIN TAXA;
        TITLE  Echis;
        DIMENSIONS NTAX=33;
        TAXLABELS
            Echis_carinatus_sochureki_01G06_ECS00034
            Echis_carinatus_sochureki_01H04_ECS00014
            Echis_carinatus_sochureki_02C03_ECS00002
            Echis_carinatus_sochureki_03F06_ECS00014
            Echis_carinatus_sochureki_05A08_ECS00014
            Echis_carinatus_sochureki_13C04_ECS00002
            Echis_coloratus_01C02_ECO00035
            Echis_coloratus_02B02_ECO00035
            Echis_coloratus_04H07_ECO00035
            Echis_coloratus_05H07_ECO00186
            Echis_coloratus_07F07_ECO00086
            Echis_coloratus_09D06_ECO00086
            Echis_ocellatus_05G03_EOC00015
            Echis_ocellatus_09G11_EOC00079
            Echis_pyramidum_leakeyi_01F05_EPL00012
            Echis_pyramidum_leakeyi_06B10_EPL00204
            Echis_pyramidum_leakeyi_07H08_EPL00071
            Echis_pyramidum_leakeyi_08B04_EPL00071
            Echis_pyramidum_leakeyi_09D09_EPL00195
            Echis_pyramidum_leakeyi_09E03_EPL00071
            Echis_pyramidum_leakeyi_09G08_EPL00071
            Echis_pyramidum_leakeyi_10A05_EPL00071
            Echis_pyramidum_leakeyi_10D09_EPL00204
            Echis_pyramidum_leakeyi_10H07_EPL00071
            Echis_pyramidum_leakeyi_10H09_EPL00012
            Echis_pyramidum_leakeyi_13F09_EPL00012
            Echis_pyramidum_leakeyi_14B06_EPL00071
            Echis_pyramidum_leakeyi_14D03_EPL00012
            Echis_pyramidum_leakeyi_14D04_EPL00012
            Echis_pyramidum_leakeyi_14D07_EPL00195
            Echis_pyramidum_leakeyi_14E11_EPL00012
            Echis_pyramidum_leakeyi_14G07_EPL00012
            Homo_sapiens_AB464018_20896703
            ;
END;

BEGIN TREES;
      TITLE Echis_phospholipase_A2_amino_acid_TB;
      LINK TAXA = Echis;
      TREE Echis_PLA2_AA = [&R] (Homo_sapiens_AB464018_20896703:0.97879,(((Echis_carinatus_sochureki_02C03_ECS00002:0.013815,Echis_carinatus_sochureki_13C04_ECS00002:0.034002)1.00:0.16553,((((Echis_pyramidum_leakeyi_09E03_EPL00071:0.01513,((Echis_pyramidum_leakeyi_10A05_EPL00071:0.015526,Echis_pyramidum_leakeyi_07H08_EPL00071:0.007594)0.20:0.007547,Echis_pyramidum_leakeyi_14B06_EPL00071:0.015048)0.20:0.007752)0.98:0.015079,Echis_pyramidum_leakeyi_08B04_EPL00071:0.007598)0.23:0.007858,(Echis_pyramidum_leakeyi_09G08_EPL00071:0.017612,Echis_pyramidum_leakeyi_10H07_EPL00071:0.020098)0.28:0.011087)0.97:0.026708,Echis_coloratus_05H07_ECO00186:0.035624)1.00:0.059327)1.00:0.179034,(Echis_coloratus_07F07_ECO00086:0.035984,Echis_coloratus_09D06_ECO00086:0.009504)1.00:0.234616)1.00:0.226081,(((((Echis_carinatus_sochureki_03F06_ECS00014:0.015806,Echis_carinatus_sochureki_01H04_ECS00014:0.007906)0.90:0.015251,(Echis_carinatus_sochureki_05A08_ECS00014:0.007873,Echis_carinatus_sochureki_01G06_ECS00034:0.047879)0.34:0.009323)1.00:0.113498,((Echis_pyramidum_leakeyi_13F09_EPL00012:0.009967,((((Echis_pyramidum_leakeyi_10H09_EPL00012:0.015661,Echis_pyramidum_leakeyi_01F05_EPL00012:0.007829)0.11:0.0079,(((Echis_pyramidum_leakeyi_14E11_EPL00012:0.016027,Echis_pyramidum_leakeyi_14D03_EPL00012:0.007846)0.34:0.008477,Echis_pyramidum_leakeyi_14D07_EPL00195:0.031992)0.94:0.015583,Echis_pyramidum_leakeyi_14D04_EPL00012:0.023627)0.11:0.008127)0.06:0.007967,Echis_pyramidum_leakeyi_14G07_EPL00012:0.031746)0.27:0.014038,Echis_pyramidum_leakeyi_09D09_EPL00195:0.039822)0.37:0.014465)0.53:0.027221,(Echis_coloratus_04H07_ECO00035:0.015447,(Echis_coloratus_01C02_ECO00035:0.007754,Echis_coloratus_02B02_ECO00035:0.015606)0.33:0.007937)0.98:0.046086)1.00:0.147875)0.49:0.035702,Echis_ocellatus_05G03_EOC00015:0.0375)1.00:0.150756,((Echis_pyramidum_leakeyi_06B10_EPL00204:0.011022,Echis_pyramidum_leakeyi_10D09_EPL00204:0.020143)1.00:0.134726,Echis_ocellatus_09G11_EOC00079:0.12621)0.99:0.095689)1.00:0.220481);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr21100]


END;