#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 17, 2024; 5:49 GMT

TreeBASE (cc) 1994-2008

Study reference:
Hsieh H., Ju Y., & Rogers J. 2005. Molecular phylogeny of Hypoxylon and closely related
genera. Mycologia, 97: 844-865.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S1444]

BEGIN TAXA;
        TITLE  'beta-tubulin and alpha-actin combined';
        DIMENSIONS NTAX=107;
        TAXLABELS
            Annulohypoxylon_bovei_var_microspora
            Annulohypoxylon_cohaerens
            Annulohypoxylon_elevatidiscus
            Annulohypoxylon_minutellum
            Annulohypoxylon_moriforme_var_microdiscus
            Annulohypoxylon_multiforme
            Annulohypoxylon_multiforme_var_alaskense
            Annulohypoxylon_nitens_293
            Annulohypoxylon_nitens_91022108
            Annulohypoxylon_squamulosum
            Annulohypoxylon_stygium_90041409
            Annulohypoxylon_stygium_90081906
            Annulohypoxylon_stygium_var_annulatum_3
            Annulohypoxylon_stygium_var_annulatum_91042205
            Annulohypoxylon_urceolatum
            Biscogniauxia_anceps
            Biscogniauxia_arima
            Biscogniauxia_atropunctata
            Biscogniauxia_capnodes_138
            Biscogniauxia_capnodes_142
            Biscogniauxia_capnodes_var_rumpens_144
            Biscogniauxia_citriformis_129
            Biscogniauxia_citriformis_88113012
            Biscogniauxia_cylindrispora
            Biscogniauxia_formosana
            Biscogniauxia_granmo
            Biscogniauxia_latirima_89101101
            Biscogniauxia_latirima_90080703
            Biscogniauxia_mediterranea
            Biscogniauxia_philippinensis_var_microspora
            Biscogniauxia_simplicior
            Biscogniauxia_uniapiculata
            Daldinia_bambusicola
            Daldinia_caldariorum_104
            Daldinia_caldariorum_263
            Daldinia_childiae_252
            Daldinia_childiae_91010202
            Daldinia_clavata
            Daldinia_decipiens
            Daldinia_eschscholzii_101
            Daldinia_eschscholzii_264
            Daldinia_fissa
            Daldinia_loculata
            Daldinia_petriniae
            Daldinia_singularis
            Daldinia_sp_from_Russian_Far_East_103
            Hadrotricum_pyrenaicum
            Hypoxylon_anthochroum
            Hypoxylon_begae
            Hypoxylon_brevisporum
            Hypoxylon_carneum
            Hypoxylon_cercidicolum
            Hypoxylon_cinnabarinum_43
            Hypoxylon_cinnabarinum_8
            Hypoxylon_crocopeplum_11
            Hypoxylon_crocopeplum_7
            Hypoxylon_dieckmannii_45
            Hypoxylon_dieckmannii_89041203
            Hypoxylon_duranii
            Hypoxylon_erythrostroma_81
            Hypoxylon_erythrostroma_90080602
            Hypoxylon_fendleri_2
            Hypoxylon_fendleri_92092016
            Hypoxylon_fragiforme_383
            Hypoxylon_fragiforme_387
            Hypoxylon_fuscopurpureum
            Hypoxylon_fuscum_23
            Hypoxylon_fuscum_91010205
            Hypoxylon_haematostroma_14
            Hypoxylon_haematostroma_59
            Hypoxylon_haematostroma_89091628
            Hypoxylon_howeianum
            Hypoxylon_hypomiltum
            Hypoxylon_investiens
            Hypoxylon_jecorinum
            Hypoxylon_lenormandii_88113017
            Hypoxylon_lenormandii_92092009
            Hypoxylon_lividicolor
            Hypoxylon_lividipigmentum
            Hypoxylon_macrosporum
            Hypoxylon_monticulosum
            Hypoxylon_munkii
            Hypoxylon_notatum
            Hypoxylon_perforatum_4
            Hypoxylon_perforatum_5
            Hypoxylon_perforatum_66
            Hypoxylon_petriniae
            Hypoxylon_pilgerianum
            Hypoxylon_placentiforme_16
            Hypoxylon_placentiforme_51
            Hypoxylon_polyporoideum_15
            Hypoxylon_polyporoideum_56
            Hypoxylon_polyporum
            Hypoxylon_rickii
            Hypoxylon_rubiginosum
            Hypoxylon_rutilum
            Hypoxylon_shearii_var_minor
            Hypoxylon_subgilvum_246
            Hypoxylon_subgilvum_88113007
            Hypoxylon_submonticulosum
            Hypoxylon_ticinense
            Hypoxylon_trugodes_57
            Hypoxylon_trugodes_88113005
            Hypoxylon_ulmophilum
            Hypoxylon_vinosopulvinatum
            Xylaria_bambusicola
            Xylaria_berteri
            ;
END;

BEGIN TREES;
      TITLE Tb7560;
      LINK TAXA = 'beta-tubulin and alpha-actin combined';
      TREE Fig._3 = [&R] (Xylaria_bambusicola,Xylaria_berteri,((((((Hypoxylon_munkii,Hypoxylon_hypomiltum),((Hypoxylon_rubiginosum,(Hypoxylon_petriniae,(Hypoxylon_cercidicolum,Hadrotricum_pyrenaicum))),(Hypoxylon_carneum,(((Hypoxylon_perforatum_5,(Hypoxylon_perforatum_4,Hypoxylon_perforatum_66)),(Hypoxylon_shearii_var_minor,Hypoxylon_notatum)),(Hypoxylon_ulmophilum,Hypoxylon_pilgerianum))))),(Hypoxylon_macrosporum,(Hypoxylon_duranii,(Hypoxylon_fuscum_23,Hypoxylon_fuscum_91010205)))),(((Hypoxylon_investiens,((Hypoxylon_trugodes_88113005,Hypoxylon_trugodes_57),(Hypoxylon_fuscopurpureum,(Hypoxylon_anthochroum,(Hypoxylon_begae,Hypoxylon_vinosopulvinatum))))),(((Hypoxylon_lividicolor,(Hypoxylon_lividipigmentum,Hypoxylon_brevisporum)),(Hypoxylon_polyporum,((Daldinia_fissa,((Daldinia_childiae_91010202,Daldinia_childiae_252),(Daldinia_loculata,((Daldinia_decipiens,Daldinia_petriniae),(Daldinia_sp_from_Russian_Far_East_103,Daldinia_singularis))))),((Hypoxylon_placentiforme_51,Hypoxylon_placentiforme_16),((Daldinia_bambusicola,(Daldinia_caldariorum_104,Daldinia_caldariorum_263)),(Daldinia_clavata,(Daldinia_eschscholzii_264,Daldinia_eschscholzii_101))))))),((Hypoxylon_monticulosum,Hypoxylon_submonticulosum),(Hypoxylon_dieckmannii_89041203,Hypoxylon_dieckmannii_45)))),((((Hypoxylon_crocopeplum_11,Hypoxylon_crocopeplum_7),(Hypoxylon_erythrostroma_90080602,Hypoxylon_erythrostroma_81)),(Hypoxylon_fendleri_2,Hypoxylon_fendleri_92092016)),(((Hypoxylon_haematostroma_59,(Hypoxylon_haematostroma_89091628,Hypoxylon_haematostroma_14)),((Hypoxylon_subgilvum_246,Hypoxylon_subgilvum_88113007),((Hypoxylon_ticinense,(Hypoxylon_howeianum,(Hypoxylon_fragiforme_383,Hypoxylon_fragiforme_387))),(Hypoxylon_cinnabarinum_8,(Hypoxylon_rickii,(Hypoxylon_jecorinum,(Hypoxylon_cinnabarinum_43,(Hypoxylon_polyporoideum_15,Hypoxylon_polyporoideum_56)))))))),(Hypoxylon_rutilum,(Hypoxylon_lenormandii_92092009,Hypoxylon_lenormandii_88113017)))))),((Annulohypoxylon_minutellum,(Annulohypoxylon_cohaerens,(Annulohypoxylon_multiforme_var_alaskense,Annulohypoxylon_multiforme))),(Annulohypoxylon_moriforme_var_microdiscus,((Annulohypoxylon_elevatidiscus,((Annulohypoxylon_urceolatum,(Annulohypoxylon_stygium_90041409,(Annulohypoxylon_stygium_90081906,(Annulohypoxylon_stygium_var_annulatum_91042205,Annulohypoxylon_stygium_var_annulatum_3)))),(Annulohypoxylon_nitens_91022108,Annulohypoxylon_nitens_293))),(Annulohypoxylon_bovei_var_microspora,Annulohypoxylon_squamulosum))))),(((Biscogniauxia_uniapiculata,((Biscogniauxia_philippinensis_var_microspora,(Biscogniauxia_latirima_90080703,Biscogniauxia_latirima_89101101)),(Biscogniauxia_mediterranea,Biscogniauxia_atropunctata))),(Biscogniauxia_cylindrispora,Biscogniauxia_formosana)),((Biscogniauxia_anceps,(Biscogniauxia_capnodes_var_rumpens_144,(Biscogniauxia_capnodes_142,Biscogniauxia_capnodes_138))),(Biscogniauxia_granmo,((Biscogniauxia_citriformis_129,Biscogniauxia_citriformis_88113012),(Biscogniauxia_arima,Biscogniauxia_simplicior)))))));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr2306]


END;