#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 11, 2024; 14:51 GMT

TreeBASE (cc) 1994-2008

Study reference:
Weisrock D., Harmon L., & Larson A. 2005. Resolving Deep Phylogenetic Relationships
in Salamanders: Analyses of Mitochondrial and Nuclear Genomic Data. Systematic
Biology, 54(5): 758-777.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S1317]

BEGIN TAXA;
        TITLE  'Caudata ND1-ND2-COI MP';
        DIMENSIONS NTAX=38;
        TAXLABELS
            Ambystoma_californiense
            Ambystoma_tigrinum
            Amphiuma_means
            Amphiuma_pholeter
            Amphiuma_tridactylum
            Andrias_davidianus
            Batrachuperus_mustersi
            Chioglossa_lusitanica
            Cryptobranchus_alleganiensis
            Desmognathus_ochrophaeus
            Dicamptodon_aterrimus
            Dicamptodon_tenebrosus
            Eurycea_longicauda
            Hynobius_leechii
            Hynobius_nebulosus
            Necturus_alabamensis
            Necturus_beyeri
            Necturus_lewisi
            Notophthalmus_viridescens
            Onychodactylus_fischeri
            Onychodactylus_japonicus
            Parvimolge_townsendii
            Pleurodeles_waltl
            Proteus_anguinus
            Pseudoeurycea_rex
            Pseudotriton_montanus
            Rana_catesbeiana
            Rhyacotriton_variegatus
            Salamandra_salamandra
            Salamandrella_keyserlingii
            Salamandrina_terdigitata
            Siren_intermedia
            Siren_lacertina
            Stereochilus_marginatus
            Taricha_rivularis
            Typhlonectes_compressicauda
            Typhlonectes_natans
            Xenopus_laevis
            ;
END;

BEGIN TREES;
      TITLE Tb7230;
      LINK TAXA = 'Caudata ND1-ND2-COI MP';
      TREE Fig._5a = [&R] (Typhlonectes_compressicauda,(Typhlonectes_natans,((Xenopus_laevis,Rana_catesbeiana),(((((((((Ambystoma_californiense,Ambystoma_tigrinum),(Necturus_lewisi,(Necturus_alabamensis,Necturus_beyeri))),(Dicamptodon_aterrimus,Dicamptodon_tenebrosus)),(Desmognathus_ochrophaeus,(((Pseudotriton_montanus,Stereochilus_marginatus),Eurycea_longicauda),(Parvimolge_townsendii,Pseudoeurycea_rex)))),(((((Hynobius_leechii,Hynobius_nebulosus),Salamandrella_keyserlingii),Batrachuperus_mustersi),(Onychodactylus_japonicus,Onychodactylus_fischeri)),(Andrias_davidianus,Cryptobranchus_alleganiensis))),(Rhyacotriton_variegatus,(Siren_intermedia,Siren_lacertina))),((((Notophthalmus_viridescens,Taricha_rivularis),Pleurodeles_waltl),(Chioglossa_lusitanica,Salamandra_salamandra)),Salamandrina_terdigitata)),((Amphiuma_pholeter,Amphiuma_means),Amphiuma_tridactylum)),Proteus_anguinus))));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr236]


END;