#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 27, 2024; 8:26 GMT TreeBASE (cc) 1994-2008 Study reference: Crous P.W., Slippers B., Wingfield M.J., Rheeder J., Marasas W., Phillips A., Alves A., Burgess T., Barber P., & Groenewald J.Z. 2006. Phylogenetic lineages in the Botryosphaeriaceae. Studies in Mycology, null. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1560] BEGIN TAXA; TITLE Gaps_new_state; DIMENSIONS NTAX=115; TAXLABELS Botryosphaeria_corticola_AY928051 Botryosphaeria_corticola_CBS_112545 Botryosphaeria_corticola_CBS_678.88 Botryosphaeria_dothidea_CBS_110300 Botryosphaeria_dothidea_CBS_115476 Botryosphaeria_dothidea_CBS_331.33 Botryosphaeria_dothidea_CBS_769.71 Botryosphaeria_iberica_CBS_115041 Botryosphaeria_mamane_CBS_117444 Botryosphaeria_melanops_CBS_118.39 Botryosphaeria_obtusa_AY928050 Botryosphaeria_rhodina_AY928054 Botryosphaeria_rhodina_CBS_174.26 Botryosphaeria_rhodina_CBS_287.47 Botryosphaeria_sarmentorum_AY928052 Botryosphaeria_sarmentorum_CBS_115038 Botryosphaeria_sarmentorum_CBS_120.41 Botryosphaeria_stevensii_AY928049 Botryosphaeria_stevensii_CBS_123.30 Botryosphaeria_stevensii_CBS_134.50 Botryosphaeria_stevensii_CBS_431.82 Botryosphaeria_stevensii_CPC_12461 Botryosphaeria_subglobosa_CBS_448.91 Botryosphaeria_sumachi_CBS_217.25 Botryosphaeria_tsugae_CBS_418.64 Botryosphaeria_visci_CBS_100163 Botryosphaeria_visci_CBS_186.97 Botryosphaeria_visci_CBS_218.25 Botryosphaeria_viticola_CBS_112869 Botryosphaeria_viticola_CBS_112870 Botrysphaeria_viticola_CBS_117009 Byssothecium_circinans_AY016357 Camarosporium_quaternatum_CBS_134.97 Camarosporium_quaternatum_CBS_483.95 Camarosporium_sp._CPC_12441 Diaporthe_angelicae_AY196781 Diaporthe_decedens_AF408348 Diaporthe_eres_AF362565 Diaporthe_pustulata_AF408358 Diaporthe_sp._CBS_134.42 Dichomera_eucalypti_CBS_118099 Dichomera_eucalypti_CBS_118100 Dichomera_saubinetii_CBS_990.70 Dichomera_versiformis_CBS_118101 Diplodia_cajani_CBS_214.50 Diplodia_juglandis_CBS_188.87 Diplodia_laeliocattleyae_CBS_167.28 Diplodia_pinea_CBS_393.84 Diplodia_porosum_CBS_110496 Diplodia_porosum_CBS_110574 Diplodia_rosulata_CBS_116470 Diplodia_rosulata_CBS_116472 Diplodia_sp._CPC_12264 Diplodia_sp._CPC_12442 Diplodia_sp._CPC_12444 Gaeumannomyces_graminis_var._avenae_AF362556 Guignardia_bidwellii_CBS_111645 Guignardia_bidwellii_CBS_237.48 Guignardia_citricarpa_CBS_102374 Guignardia_philoprina_CBS_447.68 Guignardia_sp._CPC_10978 Guignardia_sp._CPC_11867 Karstenula_rhodostoma_AY787933 Lasiodiplodia_crassispora_prov._nom._CBS_118741 Lasiodiplodia_gonubiensis_CBS_115812 Lasiodiplodia_rubropurpurea_prov._nov._CBS_118740 Lasiodiplodia_venezuelensis_prov._nom._CBS_118739 Letendraea_helminthicola_AY016362 Macrophomina_phaseolina_CBS_162.25 Macrophomina_phaseolina_CBS_227.33 Macrophomina_phaseolina_CPC_11052 Macrophomina_phaseolina_CPC_11070 Macrophomina_phaseolina_CPC_11079 Macrophomina_phaseolina_CPC_11085 Macrophomina_phaseolina_CPC_11106 Macrophomina_phaseolina_CPC_11108 Magnaporthe_grisea_AF362554 Microdiplodia_sp._CPC_12268 Neofusicoccum_andinum_CBS_117453 Neofusicoccum_arbuti_CBS_116131 Neofusicoccum_arbuti_CBS_116573 Neofusicoccum_arbuti_CBS_116574 Neofusicoccum_arbuti_CBS_117089 Neofusicoccum_arbuti_CBS_117090 Neofusicoccum_luteum_AY928043 Neofusicoccum_luteum_CPC_10899 Neofusicoccum_mangiferum_CBS_118531 Neofusicoccum_mangiferum_CBS_118532 Neofusicoccum_parvum_AY928045 Neofusicoccum_parvum_AY928046 Neofusicoccum_ribis_AY004336 Neofusicoccum_ribis_AY928044 Neoscytalidium_dimidiatum_CBS_251.49 Neoscytalidium_dimidiatum_CBS_312.90 Neoscytalidium_dimidiatum_CBS_499.66 Neoscytalidium_hyalinum_CBS_145.78 Phomopsis_sclerotioides_AF439628 Phomopsis_sp._CPC_12258 Phyllosticta_flevolandica_CBS_998.72 Phyllosticta_sp._CPC_11336 Phyllosticta_sp._CPC_12073 Physalospora_zeicola_CBS_269.31 Pseudofusicoccum_sp._CBS_117451 Pseudofusicoccum_stromaticum_CBS_117448 Pseudofusicoccum_stromaticum_CBS_117449 Saccharata_proteae_CBS_115206 Sphaeropsis_conspersa_CBS_209.25 Stenocarpella_macrospora_CBS_117560 Stenocarpella_maydis_CBS_117557 Stenocarpella_maydis_CBS_117558 Stenocarpella_maydis_CBS_117559 Taeniolella_alta_CBS_488.80 Tiarosporella_graminis_var._karoo_CBS_118718 Tiarosporella_madreeya_CBS_532.76 Tiarosporella_tritici_CBS_118719 ; END; BEGIN TREES; TITLE Tb7808; LINK TAXA = Gaps_new_state; TREE StrictNew = [&R] ((Gaeumannomyces_graminis_var._avenae_AF362556,Magnaporthe_grisea_AF362554),((((((((Botryosphaeria_stevensii_CBS_123.30,(Diplodia_sp._CPC_12442,Diplodia_sp._CPC_12444,Diplodia_sp._CPC_12264)Diplodia_sp.),Botryosphaeria_rhodina_CBS_174.26),(Botryosphaeria_stevensii_CBS_134.50,Sphaeropsis_conspersa_CBS_209.25,Botryosphaeria_obtusa_AY928050),(Lasiodiplodia_gonubiensis_CBS_115812,Lasiodiplodia_venezuelensis_prov._nom._CBS_118739),Botryosphaeria_corticola_CBS_112545,Botryosphaeria_corticola_CBS_678.88,Botryosphaeria_corticola_AY928051,Lasiodiplodia_rubropurpurea_prov._nov._CBS_118740,Diplodia_porosum_CBS_110496,Diplodia_rosulata_CBS_116470,Diplodia_porosum_CBS_110574,Diplodia_rosulata_CBS_116472,Botryosphaeria_stevensii_CBS_431.82,Botryosphaeria_stevensii_AY928049,Botryosphaeria_stevensii_CPC_12461,Diplodia_pinea_CBS_393.84,(Botryosphaeria_visci_CBS_100163,Botryosphaeria_visci_CBS_186.97),Botryosphaeria_visci_CBS_218.25,Botryosphaeria_tsugae_CBS_418.64,((Botryosphaeria_rhodina_CBS_287.47,Botryosphaeria_rhodina_AY928054,Diplodia_cajani_CBS_214.50,Diplodia_laeliocattleyae_CBS_167.28,Physalospora_zeicola_CBS_269.31),((Tiarosporella_graminis_var._karoo_CBS_118718,Tiarosporella_madreeya_CBS_532.76),Tiarosporella_tritici_CBS_118719)Tiarosporella),Botryosphaeria_subglobosa_CBS_448.91,Lasiodiplodia_crassispora_prov._nom._CBS_118741,Botryosphaeria_sumachi_CBS_217.25),(Botryosphaeria_dothidea_CBS_115476,Botryosphaeria_dothidea_CBS_769.71,Dichomera_saubinetii_CBS_990.70,Botryosphaeria_dothidea_CBS_110300,Botryosphaeria_dothidea_CBS_331.33),Botryosphaeria_mamane_CBS_117444,(Macrophomina_phaseolina_CPC_11052,Macrophomina_phaseolina_CPC_11070,Macrophomina_phaseolina_CPC_11079,Macrophomina_phaseolina_CPC_11085,Macrophomina_phaseolina_CPC_11106,Macrophomina_phaseolina_CPC_11108,Macrophomina_phaseolina_CBS_162.25,Macrophomina_phaseolina_CBS_227.33)Macrophomina_phaseolina,(Neoscytalidium_hyalinum_CBS_145.78,Neoscytalidium_dimidiatum_CBS_312.90,Neoscytalidium_dimidiatum_CBS_251.49,Neoscytalidium_dimidiatum_CBS_499.66)Neoscytalidium,(Botryosphaeria_iberica_CBS_115041,Botryosphaeria_sarmentorum_AY928052,Diplodia_juglandis_CBS_188.87,Botryosphaeria_sarmentorum_CBS_120.41,Botryosphaeria_sarmentorum_CBS_115038,(Botryosphaeria_viticola_CBS_112869,(Botryosphaeria_viticola_CBS_112870,Botrysphaeria_viticola_CBS_117009))),(Neofusicoccum_ribis_AY004336,Neofusicoccum_ribis_AY928044,Neofusicoccum_parvum_AY928046,Neofusicoccum_parvum_AY928045,(Dichomera_eucalypti_CBS_118099,Dichomera_eucalypti_CBS_118100)Dichomera_eucalypti,Neofusicoccum_arbuti_CBS_116131,Dichomera_versiformis_CBS_118101,(Neofusicoccum_luteum_CPC_10899,Neofusicoccum_luteum_AY928043)Neofusicoccum_luteum,Neofusicoccum_arbuti_CBS_116573,Neofusicoccum_arbuti_CBS_116574,Neofusicoccum_arbuti_CBS_117089,Neofusicoccum_arbuti_CBS_117090,Neofusicoccum_andinum_CBS_117453,(Neofusicoccum_mangiferum_CBS_118531,Neofusicoccum_mangiferum_CBS_118532)Neofusicoccum_mangiferum)Neofusicoccum),Botryosphaeria_melanops_CBS_118.39,Saccharata_proteae_CBS_115206),((Pseudofusicoccum_sp._CBS_117451,(Pseudofusicoccum_stromaticum_CBS_117448,Pseudofusicoccum_stromaticum_CBS_117449)Pseudofusicoccum_stromaticum)Pseudofusicoccum,((Phyllosticta_sp._CPC_12073,(((Guignardia_bidwellii_CBS_111645,Guignardia_bidwellii_CBS_237.48)Guignardia_bidwellii,Guignardia_philoprina_CBS_447.68),(Guignardia_sp._CPC_10978,Guignardia_sp._CPC_11867),Phyllosticta_sp._CPC_11336)),Guignardia_citricarpa_CBS_102374)Guignardia)),(((Camarosporium_quaternatum_CBS_134.97,(Camarosporium_sp._CPC_12441,Camarosporium_quaternatum_CBS_483.95))Camarosporium,((Karstenula_rhodostoma_AY787933,(Letendraea_helminthicola_AY016362,Microdiplodia_sp._CPC_12268)),Byssothecium_circinans_AY016357)),Phyllosticta_flevolandica_CBS_998.72)),((Stenocarpella_macrospora_CBS_117560,Stenocarpella_maydis_CBS_117557,Stenocarpella_maydis_CBS_117558,Stenocarpella_maydis_CBS_117559,(Diaporthe_angelicae_AY196781,(Phomopsis_sp._CPC_12258,Taeniolella_alta_CBS_488.80)),(Diaporthe_sp._CBS_134.42,Diaporthe_eres_AF362565),Diaporthe_decedens_AF408348,Phomopsis_sclerotioides_AF439628),Diaporthe_pustulata_AF408358))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr2479] END;