#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 17, 2024; 5:20 GMT TreeBASE (cc) 1994-2008 Study reference: Nagy L., Urban A., Örstadius L., Larsson E., Papp T., & Vágvölgyi C. 2010. The evolution of autodigestion in the mushroom family Psathyrellaceae (Agaricales) inferred from Maximum Likelihood and Bayesian methods. Molecular Phylogenetics and Evolution, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S10823] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=67; TAXLABELS Agrocybe_pediades_DQ110872 Agrocybe_praecox_DQ071692 Bolbitius_vitellinus_AY207147 Bolbitius_vitellinus_AY691807 Conocybe_apala_DQ457660 Coprinellus_congregatus Coprinellus_disseminatus Coprinellus_hiascens Coprinellus_impatiens Coprinellus_parvisporus Coprinellus_pellucidus Coprinellus_subpurpureus Coprinopsis_lagopus Coprinopsis_lagopus_vacillans Coprinopsis_narcotica Coprinopsis_poliomallus Coprinopsis_pseudonivea Coprinopsis_romagnesiana Coprinopsis_stercorea Coprinus_bellulus Coprinus_candidolanatus Coprinus_curtus Coprinus_krieglsteineri Coprinus_patouillardi Coprinus_stanglianus Coprinus_truncorum_1 Coprinus_truncorum_2 Coprinus_xanthothrix Lacrymaria_lacrymabunda Mythicomyces_corneipes_AF261381 Parasola_auricoma Parasola_conopila_1 Parasola_conopila_2 Parasola_leiocephala Parasola_leiocephala_1 Parasola_leiocephala_2 Parasola_lilatincta_1 Parasola_lilatincta_2 Parasola_lilatincta_3 Parasola_megasperma Parasola_misera Parasola_plicatilis Parasola_plicatilis_2 Psathyrella_ammophila Psathyrella_atcandol Psathyrella_badiophylla Psathyrella_bipellis Psathyrella_calcarea Psathyrella_chondroderma Psathyrella_clivensis Psathyrella_corrugis Psathyrella_leucotephra Psathyrella_magnispora Psathyrella_marcescibilis Psathyrella_murcida Psathyrella_niveobadia Psathyrella_panaeoloides Psathyrella_pervelata Psathyrella_pseudogracilis Psathyrella_pygmaea_1 Psathyrella_pygmaea_2 Psathyrella_reticulata Psathyrella_sp._Adiceogrisea Psathyrella_sp._cystopsathyra Psathyrella_spadicea Psathyrella_tephrophylla Psathyrella_umbrina ; END; BEGIN TREES; TITLE 4_Partition_TB; LINK TAXA = Taxa; TREE Nagyetal2010_MPE = [&R] ((Mythicomyces_corneipes_AF261381:0.088991,((Agrocybe_pediades_DQ110872:0.019457,Agrocybe_praecox_DQ071692:0.027367)1.00:0.101094,(Conocybe_apala_DQ457660:0.162673,(Bolbitius_vitellinus_AY691807:0.005056,Bolbitius_vitellinus_AY207147:0.010961)1.00:0.115777)1.00:0.067558)1.00:0.055633)1.00:0.0176075,(((Parasola_auricoma:0.063836,(Parasola_conopila_1:0.007824,Parasola_conopila_2:0.007219)1.00:0.04746)0.98:0.013664,(Parasola_plicatilis:0.014662,(Parasola_megasperma:0.012061,(Parasola_misera:0.022496,((Parasola_leiocephala_1:0.002072,Parasola_plicatilis_2:0.006774)1.00:0.034326,((Parasola_leiocephala:0.004328,Parasola_leiocephala_2:0.004097)1.00:0.009991,(Parasola_lilatincta_3:0.006011,(Parasola_lilatincta_1:0.014685,Parasola_lilatincta_2:0.039258)1.00:0.011489)1.00:0.019327)0.72:0.007658)0.99:0.00925)1.00:0.008962)0.75:0.004409)1.00:0.034958)1.00:0.077483,((((Coprinus_bellulus:0.099399,Coprinopsis_pseudonivea:0.073773)1.00:0.031157,(Psathyrella_marcescibilis:0.0173,Psathyrella_niveobadia:0.017359)1.00:0.045615)1.00:0.029781,(Coprinus_stanglianus:0.0706,(Coprinopsis_poliomallus:0.036217,(Coprinopsis_narcotica:0.045516,Coprinopsis_stercorea:0.052434)0.92:0.014999)1.00:0.025269,((Coprinopsis_romagnesiana:0.062098,Coprinus_krieglsteineri:0.026232)1.00:0.015397,(Coprinus_candidolanatus:0.043326,(Coprinopsis_lagopus:0.010106,Coprinopsis_lagopus_vacillans:0.005825)1.00:0.03206)0.98:0.010621)1.00:0.014668)1.00:0.019684)1.00:0.025801,((Lacrymaria_lacrymabunda:0.031375,Psathyrella_spadicea:0.016885)1.00:0.047675,(((Psathyrella_badiophylla:0.002318,(Psathyrella_atcandol:0.020981,Psathyrella_leucotephra:0.008494):0.004659)0.66:0.03667,((Coprinus_curtus:0.008335,Coprinellus_parvisporus:0.030226)1.00:0.023657,(Coprinus_xanthothrix:0.0257,(Coprinellus_disseminatus:0.067931,(Coprinus_truncorum_1:7.21E-4,Coprinus_truncorum_2:0.014549)1.00:0.017387)0.98:0.011021)0.79:0.005069)1.00:0.040406)1.00:0.011987,(((Psathyrella_bipellis:0.015768,(Psathyrella_sp._cystopsathyra:0.020169,(Psathyrella_corrugis:0.011824,Psathyrella_pseudogracilis:0.001906)1.00:0.011671)0.91:0.008426)0.98:0.006851,(Psathyrella_calcarea:0.022256,(Coprinellus_impatiens:0.021679,(Coprinellus_congregatus:0.037171,(Coprinellus_pellucidus:0.035289,(Coprinellus_hiascens:0.02427,Coprinellus_subpurpureus:0.004975)0.90:0.003732)0.91:0.004423)0.87:0.005344)1.00:0.02571)0.87:0.007934)0.82:0.006164,(((Psathyrella_ammophila:0.001523,Psathyrella_magnispora:0.00361)1.00:0.023731,(Psathyrella_clivensis:0.012969,Psathyrella_sp._Adiceogrisea:0.015101)1.00:0.007233)1.00:0.017127,(Psathyrella_pervelata:0.1226,(Psathyrella_chondroderma:0.038813,(Psathyrella_umbrina:0.060911,(Psathyrella_murcida:0.030773,Coprinus_patouillardi:0.093234)0.86:0.006831)1.00:0.01132,((Psathyrella_pygmaea_1:0.0014,Psathyrella_pygmaea_2:0.004414)1.00:0.040713,(Psathyrella_reticulata:0.026168,(Psathyrella_panaeoloides:0.022404,Psathyrella_tephrophylla:0.019627)1.00:0.006152)1.00:0.008915)1.00:0.02245)0.87:0.014026)0.85:0.010832)0.99:0.008767)0.97:0.020678)0.85:0.040643)1.00:0.011227)0.89:0.015396)1.00:0.0176075); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr25322] END;