#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 17, 2024; 10:34 GMT

TreeBASE (cc) 1994-2008

Study reference:
Kiss L., Pintye A., Kovács G., Jankovics T., Fontaine M.C., Harvey N., Xu X., Nicot
P.C., Bardin M., Shykoff J.A., & Giraud T. 2011. Temporal isolation explains
host-related genetic differentiation in a group of widespread mycoparasitic fungi.
Molecular Ecology, 20(7): 1492-1507.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S11058]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=185;
        TAXLABELS
            Ampelomyces_sp._263_AF035782
            Ampelomyces_sp._A1_AF035780
            'Ampelomyces sp. A10-a'
            'Ampelomyces sp. A104-a'
            Ampelomyces_sp._A105
            'Ampelomyces sp. A106-a'
            'Ampelomyces sp. A108-a'
            'Ampelomyces sp. A109-a'
            'Ampelomyces sp. A11-a'
            'Ampelomyces sp. A110-a'
            'Ampelomyces sp. A110-b'
            'Ampelomyces sp. A111-a'
            'Ampelomyces sp. A111-b'
            Ampelomyces_sp._A112
            'Ampelomyces sp. A113-a'
            'Ampelomyces sp. A113-b'
            'Ampelomyces sp. A114-a'
            'Ampelomyces sp. A114-b'
            Ampelomyces_sp._A115
            'Ampelomyces sp. A12-a'
            'Ampelomyces sp. A14-a'
            'Ampelomyces sp. A15-a'
            Ampelomyces_sp._A17
            'Ampelomyces sp. A18-a'
            'Ampelomyces sp. A19-a'
            'Ampelomyces sp. A20-a'
            'Ampelomyces sp. A20-b'
            'Ampelomyces sp. A21-a'
            Ampelomyces_sp._A26
            'Ampelomyces sp. A27-a'
            'Ampelomyces sp. A28-a'
            'Ampelomyces sp. A30-c'
            Ampelomyces_sp._A31
            Ampelomyces_sp._A32
            'Ampelomyces sp. A33-e'
            'Ampelomyces sp. A37-a'
            'Ampelomyces sp. A38-a'
            'Ampelomyces sp. A39-a'
            'Ampelomyces sp. A40-a'
            'Ampelomyces sp. A41-c'
            Ampelomyces_sp._A42
            'Ampelomyces sp. A45-a'
            'Ampelomyces sp. A47-b'
            'Ampelomyces sp. A61-b'
            'Ampelomyces sp. A62-a'
            'Ampelomyces sp. A62-b'
            'Ampelomyces sp. A63-a'
            'Ampelomyces sp. A66-a'
            'Ampelomyces sp. A77-a'
            Ampelomyces_sp._A79
            Ampelomyces_sp._A8
            'Ampelomyces sp. A80-c'
            'Ampelomyces sp. A81-a'
            'Ampelomyces sp. A82-a'
            'Ampelomyces sp. A86-a'
            'Ampelomyces sp. A87-c'
            Ampelomyces_sp._A9
            'Ampelomyces sp. A92-c'
            'Ampelomyces sp. A93-b'
            'Ampelomyces sp. A94-a'
            'Ampelomyces sp. A96-c'
            Ampelomyces_sp._A97
            Ampelomyces_sp._A98
            Ampelomyces_sp._A99
            'Ampelomyces sp. ALA1-a'
            Ampelomyces_sp._AQ10_AF035783
            Ampelomyces_sp._AQ2_AF126818
            Ampelomyces_sp._AQ3_AF126817
            Ampelomyces_sp._AY587139
            Ampelomyces_sp._Aq_SA
            Ampelomyces_sp._Aq_W
            Ampelomyces_sp._B118
            'Ampelomyces sp. B124-a'
            'Ampelomyces sp. B162-a'
            Ampelomyces_sp._B176
            Ampelomyces_sp._B190
            Ampelomyces_sp._B2
            Ampelomyces_sp._B200
            Ampelomyces_sp._B221
            Ampelomyces_sp._B24
            'Ampelomyces sp. B244-b'
            Ampelomyces_sp._B33
            Ampelomyces_sp._B34
            Ampelomyces_sp._B4
            Ampelomyces_sp._B40
            Ampelomyces_sp._B55
            Ampelomyces_sp._B61
            Ampelomyces_sp._B82
            Ampelomyces_sp._B94
            Ampelomyces_sp._BV1
            Ampelomyces_sp._BV2
            'Ampelomyces sp. BV4-a'
            Ampelomyces_sp._C3
            Ampelomyces_sp._CBS_130.79_U82449
            Ampelomyces_sp._CBS_131.79
            Ampelomyces_sp._CBS131.31_AF035781
            Ampelomyces_sp._CBS133.32
            Ampelomyces_sp._CM
            Ampelomyces_sp._CS1
            Ampelomyces_sp._DC1
            'Ampelomyces sp. DC2-a'
            Ampelomyces_sp._DSM2222_U82450
            Ampelomyces_sp._DSM2223_U82451
            Ampelomyces_sp._G2_DQ490770
            Ampelomyces_sp._G273
            Ampelomyces_sp._GL
            Ampelomyces_sp._GS1
            'Ampelomyces sp. GS2-a'
            Ampelomyces_sp._GW
            'Ampelomyces sp. GY-a'
            'Ampelomyces sp. GY-b'
            Ampelomyces_sp._GYER
            Ampelomyces_sp._GZ1
            'Ampelomyces sp. GZ2-b'
            Ampelomyces_sp._HMLAC201_DQ490745
            Ampelomyces_sp._HMLAC202_DQ490746
            Ampelomyces_sp._HMLAC203_DQ490747
            Ampelomyces_sp._HMLAC204_DQ490758
            Ampelomyces_sp._HMLAC206_DQ490760
            Ampelomyces_sp._HMLAC207_DQ490759
            Ampelomyces_sp._HMLAC208_DQ490754
            Ampelomyces_sp._HMLAC209
            Ampelomyces_sp._HMLAC210_DQ490755
            Ampelomyces_sp._HMLAC211_DQ490756
            Ampelomyces_sp._HMLAC212_DQ490764
            Ampelomyces_sp._HMLAC214_DQ490765
            Ampelomyces_sp._HMLAC216_DQ490767
            Ampelomyces_sp._HMLAC217_DQ490752
            Ampelomyces_sp._HMLAC218_DQ490768
            Ampelomyces_sp._HMLAC219_DQ490757
            Ampelomyces_sp._HMLAC220_DQ490753
            Ampelomyces_sp._HMLAC221_DQ490748
            Ampelomyces_sp._HMLAC222_DQ490749
            Ampelomyces_sp._HMLAC225_DQ490769
            Ampelomyces_sp._HMLAC226_DQ490766
            Ampelomyces_sp._HMLAC227_DQ490750
            Ampelomyces_sp._HMLAC229_DQ490751
            Ampelomyces_sp._IMI272851
            Ampelomyces_sp._JY1_DQ490761
            Ampelomyces_sp._JY3_DQ490762
            'Ampelomyces sp. LV1-a'
            'Ampelomyces sp. LV2-a'
            'Ampelomyces sp. LV2-b'
            'Ampelomyces sp. MA1-a'
            'Ampelomyces sp. MA1-c'
            Ampelomyces_sp._MA2
            'Ampelomyces sp. MA3-a'
            'Ampelomyces sp. MA6-a'
            'Ampelomyces sp. MA6-b'
            Ampelomyces_sp._MA8
            'Ampelomyces sp. MYA-3399 AY663823'
            'Ampelomyces sp. MYA-3400 AY663824'
            Ampelomyces_sp._O1_DQ490771
            Ampelomyces_sp._PA1
            Ampelomyces_sp._PL1
            'Ampelomyces sp. PN1-a'
            'Ampelomyces sp. PN4-b'
            'Ampelomyces sp. RA1-a'
            'Ampelomyces sp. RA1-f'
            'Ampelomyces sp. RA2-a'
            'Ampelomyces sp. RA2-d'
            'Ampelomyces sp. RS1-a'
            'Ampelomyces sp. RS3-a'
            Ampelomyces_sp._RS5
            'Ampelomyces sp. RU1-b'
            'Ampelomyces sp. RU2-a'
            'Ampelomyces sp. RU4-b'
            'Ampelomyces sp. RU5-a'
            Ampelomyces_sp._SF414
            Ampelomyces_sp._SF419
            Ampelomyces_sp._SF423
            Ampelomyces_sp._TP1
            Ampelomyces_sp._TP2
            'Ampelomyces sp. TP7-a'
            'Ampelomyces sp. TP9-b'
            'Ampelomyces sp. TR-a'
            Ampelomyces_sp._TR1
            Ampelomyces_sp._U1
            'Ampelomyces sp. XL1-a'
            'Ampelomyces sp. XL2-a'
            'Ampelomyces sp. XL2-b'
            'Ampelomyces sp. XL3-a'
            'Ampelomyces sp. XL3-b'
            'Ampelomyces sp. XL4-b'
            'Phoma sp. MYA-3402 AY663825'
            ;
END;

BEGIN TREES;
      TITLE Ampelomyces_ITS_MPT;
      LINK TAXA = Taxa;
      TREE PHYLIP_1 = [&R] ('Phoma sp. MYA-3402 AY663825':55.0,(((('Ampelomyces sp. RS1-a':0.0,'Ampelomyces sp. RS3-a':0.0,Ampelomyces_sp._RS5:0.0,Ampelomyces_sp._Aq_SA:0.0,Ampelomyces_sp._HMLAC226_DQ490766:0.0,Ampelomyces_sp._PA1:0.0,Ampelomyces_sp._G2_DQ490770:0.0,'Ampelomyces sp. RA1-a':0.0,'Ampelomyces sp. RA1-f':0.0,'Ampelomyces sp. RA2-a':0.0,'Ampelomyces sp. RA2-d':0.0,Ampelomyces_sp._PL1:0.0,Ampelomyces_sp._CBS133.32:0.0,'Ampelomyces sp. MA1-a':0.0,'Ampelomyces sp. MA1-c':0.0,Ampelomyces_sp._MA2:0.0,'Ampelomyces sp. MA3-a':0.0,'Ampelomyces sp. MA6-a':0.0,'Ampelomyces sp. MA6-b':0.0,Ampelomyces_sp._MA8:0.0,Ampelomyces_sp._BV1:0.0,Ampelomyces_sp._BV2:0.0,'Ampelomyces sp. BV4-a':0.0,'Ampelomyces sp. XL1-a':0.0,'Ampelomyces sp. XL2-a':0.0,'Ampelomyces sp. XL2-b':0.0,'Ampelomyces sp. XL3-a':0.0,'Ampelomyces sp. XL3-b':0.0,'Ampelomyces sp. XL4-b':0.0,'Ampelomyces sp. LV1-a':0.0,'Ampelomyces sp. LV2-a':0.0,'Ampelomyces sp. LV2-b':0.0,'Ampelomyces sp. MYA-3399 AY663823':0.0,'Ampelomyces sp. MYA-3400 AY663824':0.0,Ampelomyces_sp._AY587139:0.0,Ampelomyces_sp._AQ10_AF035783:0.0,Ampelomyces_sp._DC1:0.0,'Ampelomyces sp. DC2-a':0.0,Ampelomyces_sp._GZ1:0.0,'Ampelomyces sp. GZ2-b':0.0,Ampelomyces_sp._HMLAC212_DQ490764:0.0,Ampelomyces_sp._O1_DQ490771:0.0,'Ampelomyces sp. TR-a':0.0,'Ampelomyces sp. ALA1-a':0.0,'Ampelomyces sp. GY-a':0.0,'Ampelomyces sp. GY-b':0.0,Ampelomyces_sp._A8:0.0,Ampelomyces_sp._A9:0.0,'Ampelomyces sp. A10-a':0.0,'Ampelomyces sp. A11-a':0.0,'Ampelomyces sp. A12-a':0.0,'Ampelomyces sp. A14-a':0.0,'Ampelomyces sp. A15-a':0.0,Ampelomyces_sp._A17:0.0,'Ampelomyces sp. A18-a':0.0,'Ampelomyces sp. A19-a':0.0,'Ampelomyces sp. A20-a':0.0,'Ampelomyces sp. A20-b':0.0,Ampelomyces_sp._A26:0.0,'Ampelomyces sp. A27-a':0.0,'Ampelomyces sp. A28-a':0.0,Ampelomyces_sp._A31:0.0,Ampelomyces_sp._A32:0.0,'Ampelomyces sp. A33-e':0.0,'Ampelomyces sp. A39-a':0.0,'Ampelomyces sp. A41-c':0.0,'Ampelomyces sp. A61-b':0.0,'Ampelomyces sp. A62-a':0.0,'Ampelomyces sp. A62-b':0.0,'Ampelomyces sp. A77-a':0.0,Ampelomyces_sp._A79:0.0,'Ampelomyces sp. A80-c':0.0,'Ampelomyces sp. A81-a':0.0,'Ampelomyces sp. A82-a':0.0,'Ampelomyces sp. A86-a':0.0,'Ampelomyces sp. A87-c':0.0,'Ampelomyces sp. A92-c':0.0,Ampelomyces_sp._JY3_DQ490762:0.0,'Ampelomyces sp. A96-c':0.0,Ampelomyces_sp._A98:0.0,'Ampelomyces sp. A108-a':0.0,'Ampelomyces sp. A111-a':0.0,'Ampelomyces sp. A113-a':0.0,'Ampelomyces sp. A113-b':0.0,'Ampelomyces sp. A114-a':0.0,'Ampelomyces sp. A114-b':0.0,Ampelomyces_sp._A115:0.0,Ampelomyces_sp._A1_AF035780:0.0,Ampelomyces_sp._DSM2222_U82450:0.0,'Ampelomyces sp. PN1-a':0.0,Ampelomyces_sp._HMLAC214_DQ490765:0.0,Ampelomyces_sp._CS1:0.0,'Ampelomyces sp. GS2-a':0.0,Ampelomyces_sp._IMI272851:0.0,('Ampelomyces sp. A94-a':0.0,Ampelomyces_sp._A97:0.0,Ampelomyces_sp._TR1:0.0,Ampelomyces_sp._TP1:0.0,Ampelomyces_sp._TP2:0.0,'Ampelomyces sp. TP7-a':0.0,'Ampelomyces sp. TP9-b':0.0,Ampelomyces_sp._GS1:0.0,Ampelomyces_sp._GL:0.0,Ampelomyces_sp._C3:0.0,'Ampelomyces sp. PN4-b':0.0):1.0):3.0,('Ampelomyces sp. A104-a':0.0,Ampelomyces_sp._A105:0.0):2.0):3.0,(Ampelomyces_sp._JY1_DQ490761:0.0,Ampelomyces_sp._HMLAC216_DQ490767:0.0,('Ampelomyces sp. RU1-b':0.0,'Ampelomyces sp. RU2-a':0.0,'Ampelomyces sp. RU4-b':0.0,'Ampelomyces sp. RU5-a':0.0,Ampelomyces_sp._CBS131.31_AF035781:1.0):1.0):12.0):8.0,((('Ampelomyces sp. A21-a':0.0,'Ampelomyces sp. A30-c':0.0,'Ampelomyces sp. A37-a':0.0,'Ampelomyces sp. A38-a':0.0,'Ampelomyces sp. A40-a':0.0,Ampelomyces_sp._A42:0.0,'Ampelomyces sp. A45-a':0.0,'Ampelomyces sp. A47-b':0.0,'Ampelomyces sp. A63-a':0.0,'Ampelomyces sp. A66-a':0.0,'Ampelomyces sp. A93-b':0.0,Ampelomyces_sp._A99:0.0,'Ampelomyces sp. A106-a':0.0,'Ampelomyces sp. A109-a':0.0,'Ampelomyces sp. A110-a':0.0,'Ampelomyces sp. A110-b':0.0,'Ampelomyces sp. A111-b':0.0,Ampelomyces_sp._A112:0.0,Ampelomyces_sp._CM:0.0,Ampelomyces_sp._DSM2223_U82451:2.0):7.0,(Ampelomyces_sp._GYER:2.0,(Ampelomyces_sp._HMLAC225_DQ490769:0.0,Ampelomyces_sp._HMLAC218_DQ490768:2.0):7.0):16.0):14.0,(Ampelomyces_sp._AQ2_AF126818:14.0,(Ampelomyces_sp._SF423:2.0,((Ampelomyces_sp._SF414:0.0,Ampelomyces_sp._SF419:2.0):1.0,(Ampelomyces_sp._G273:0.0,Ampelomyces_sp._AQ3_AF126817:2.0):2.0):1.0):7.0):34.0):14.0):12.0,((Ampelomyces_sp._HMLAC209:24.0,(Ampelomyces_sp._B2:0.0,Ampelomyces_sp._B4:0.0,Ampelomyces_sp._B24:0.0,Ampelomyces_sp._B33:0.0,Ampelomyces_sp._B34:0.0,Ampelomyces_sp._B40:0.0,Ampelomyces_sp._B55:0.0,Ampelomyces_sp._B61:0.0,Ampelomyces_sp._B82:0.0,Ampelomyces_sp._B94:0.0,Ampelomyces_sp._B118:0.0,'Ampelomyces sp. B124-a':0.0,'Ampelomyces sp. B162-a':0.0,Ampelomyces_sp._B176:0.0,Ampelomyces_sp._B190:0.0,Ampelomyces_sp._B200:0.0,Ampelomyces_sp._B221:0.0,'Ampelomyces sp. B244-b':0.0,Ampelomyces_sp._GW:0.0,Ampelomyces_sp._U1:0.0,Ampelomyces_sp._Aq_W:0.0):24.0):9.0,(Ampelomyces_sp._CBS_131.79:10.0,(Ampelomyces_sp._CBS_130.79_U82449:8.0,(Ampelomyces_sp._263_AF035782:7.0,(Ampelomyces_sp._HMLAC206_DQ490760:7.0,(Ampelomyces_sp._HMLAC208_DQ490754:2.0,Ampelomyces_sp._HMLAC202_DQ490746:2.0,Ampelomyces_sp._HMLAC210_DQ490755:2.0,Ampelomyces_sp._HMLAC217_DQ490752:1.0,Ampelomyces_sp._HMLAC220_DQ490753:1.0,Ampelomyces_sp._HMLAC219_DQ490757:1.0,Ampelomyces_sp._HMLAC211_DQ490756:1.0,Ampelomyces_sp._HMLAC222_DQ490749:0.0,Ampelomyces_sp._HMLAC229_DQ490751:0.0,Ampelomyces_sp._HMLAC227_DQ490750:0.0,Ampelomyces_sp._HMLAC221_DQ490748:0.0,Ampelomyces_sp._HMLAC203_DQ490747:1.0,Ampelomyces_sp._HMLAC201_DQ490745:0.0,(Ampelomyces_sp._HMLAC204_DQ490758:8.0,Ampelomyces_sp._HMLAC207_DQ490759:7.0):1.0):12.0):5.0):7.0):15.0):35.0):7.0);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr27304]


END;