#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 22, 2024; 15:18 GMT

TreeBASE (cc) 1994-2008

Study reference:
Sekimoto S., Rochon D., Long J.E., Dee J.M., & Berbee M. 2011. A multigene phylogeny
of Olpidium and its implications for early fungal evolution. BMC Evolutionary
Biology, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S11208]

BEGIN TAXA;
        TITLE  Untitled_Block_of_Taxa;
        DIMENSIONS NTAX=62;
        TAXLABELS
            Allomyces_arbusculus
            Allomyces_macrogynus
            Basidiobolus_haptosporus
            Basidiobolus_ranarum
            Batrachochytrium_dendrobatidis
            Blastocladiella_emersonii
            Caenorhabditis_elegans
            Candida_albicans
            Catenaria_anguillulae
            Chytriomyces_hyalinus
            Cladochytrium_replicatum
            Coelomomyces_stegomyiae
            Coemansia_reversa
            Cokeromyces_recurvatus
            Conidiobolus_coronatus
            Coprinopsis_cinerea
            Cryptococcus_neoformans
            Cryptosporidium_parvum
            Cyanidioschyzon_merolae
            Dictyostelium_discoideum
            Dimargaris_bacillispora
            Drosophila_melanogaster
            Endogone_pisiformis
            Entomophthora_muscae
            Entophlyctis_confervae_glomeratae
            Furculomyces_boomerangus
            Gaertneriomyces_semiglobiferus
            Glomus_intraradices
            Gonapodya_sp_JEL183
            Homo_sapiens
            Hyaloraphidium_curvatum
            Monoblepharis_macrandra
            Monoblepharis_polymorpha
            Mortierella_verticillata
            Neocallimastix_frontalis
            Neurospora_crassa
            Nowakowskiella_elegans
            Olpidium_bornovanus
            Olpidium_brassicae
            Phanerochaete_chrysosporium
            Phlyctochytrium_planicorne
            Phycomyces_blakesleeanus
            Physoderma_maydis
            Phytophthora_sojae
            Piptocephalis_corymbifera
            Polychytrium_aggregatum
            Populus_trichocarpa
            Puccinia_graminis
            Rhizoclosmatium_sp_JEL347_h
            Rhizophlyctis_rosea
            Rhizophydium_macroporosum
            Rhizopus_oryzae
            Rhopalomyces_elegans
            Saccharomyces_cerevisiae
            Scutellospora_heterogama
            Smittium_culisetae
            Spiromyces_aspiralis
            Spizellomyces_punctatus
            Synchytrium_macrosporum
            Toxoplasma_gondii
            Umbelopsis_ramanniana
            Yarrowia_lipolytica
            ;
END;

BEGIN TREES;
      TITLE MLT_shown_in_Figure_2;
      LINK TAXA = Untitled_Block_of_Taxa;
      TREE Fig._2 = [&R] ((((((Mortierella_verticillata,(Endogone_pisiformis,(Umbelopsis_ramanniana,((Cokeromyces_recurvatus,Rhizopus_oryzae),Phycomyces_blakesleeanus)))),(((Olpidium_brassicae,Olpidium_bornovanus),((Basidiobolus_ranarum,Basidiobolus_haptosporus),((Dimargaris_bacillispora,(Coemansia_reversa,((Furculomyces_boomerangus,Smittium_culisetae),Spiromyces_aspiralis))),(Entomophthora_muscae,Conidiobolus_coronatus)))),(Piptocephalis_corymbifera,Rhopalomyces_elegans))),(Glomus_intraradices,Scutellospora_heterogama)),(((((Caenorhabditis_elegans,(Homo_sapiens,Drosophila_melanogaster)),(Dictyostelium_discoideum,((Cyanidioschyzon_merolae,Populus_trichocarpa),((Cryptosporidium_parvum,Toxoplasma_gondii),Phytophthora_sojae)))),(Hyaloraphidium_curvatum,(Gonapodya_sp_JEL183,(Monoblepharis_polymorpha,Monoblepharis_macrandra)))),(((Synchytrium_macrosporum,(Nowakowskiella_elegans,Cladochytrium_replicatum)),((Polychytrium_aggregatum,((Gaertneriomyces_semiglobiferus,(Entophlyctis_confervae_glomeratae,Spizellomyces_punctatus)),(Batrachochytrium_dendrobatidis,Rhizophydium_macroporosum))),(Rhizophlyctis_rosea,(Phlyctochytrium_planicorne,(Rhizoclosmatium_sp_JEL347_h,Chytriomyces_hyalinus))))),Neocallimastix_frontalis)),(Physoderma_maydis,(((Catenaria_anguillulae,Blastocladiella_emersonii),(Allomyces_arbusculus,Allomyces_macrogynus)),Coelomomyces_stegomyiae)))),(Neurospora_crassa,(Yarrowia_lipolytica,(Saccharomyces_cerevisiae,Candida_albicans)))),(Cryptococcus_neoformans,(Coprinopsis_cinerea,Phanerochaete_chrysosporium)),Puccinia_graminis);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr27545]


END;