#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 18, 2024; 21:54 GMT

TreeBASE (cc) 1994-2008

Study reference:
Kroken S., & Taylor J. 2001. A gene genealogical approach to recognize phylogenetic
species boundaries in the lichenized fungus Letharia. Mycologia, 93(1): 38-53.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S11236]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=51;
        TAXLABELS
            Letharia_barbata_CL2
            Letharia_barbata_LP1
            Letharia_barbata_OC1
            Letharia_barbata_ST1
            Letharia_barbata_TB1
            Letharia_barbata_TB2
            Letharia_barbata_TC1
            Letharia_gracilis_B1
            Letharia_gracilis_B2
            Letharia_gracilis_B3
            Letharia_gracilis_B4
            Letharia_gracilis_B5
            Letharia_gracilis_K1
            Letharia_gracilis_K141
            Letharia_gracilis_K148
            Letharia_lucida_CL3
            Letharia_lucida_DP2
            Letharia_lucida_EP1
            Letharia_lucida_L20a
            Letharia_lucida_SG1
            Letharia_lucida_ST1
            Letharia_lucida_T3
            Letharia_lupina_AP1
            Letharia_lupina_BC1
            Letharia_lupina_CL1
            Letharia_lupina_DP1
            Letharia_lupina_K2
            Letharia_lupina_L22b
            Letharia_lupina_MV1
            Letharia_lupina_SG1
            Letharia_lupina_SH1
            Letharia_lupina_ST2
            Letharia_lupina_T1
            Letharia_lupina_T23a
            Letharia_lupina_T23b
            Letharia_lupina_T4
            Letharia_lupina_TB1
            Letharia_lupina_TC1
            Letharia_rugosa_CL1
            Letharia_rugosa_CP1
            Letharia_rugosa_CP2
            Letharia_rugosa_PM1
            Letharia_rugosa_PM2
            Letharia_rugosa_V1
            Letharia_vulpina_AV2
            Letharia_vulpina_AV3
            Letharia_vulpina_CW8
            Letharia_vulpina_H1
            Letharia_vulpina_IT1
            Letharia_vulpina_IT2
            Letharia_vulpina_SW1
            ;
END;

BEGIN TREES;
      TITLE Letharia_12_Loci_TB;
      LINK TAXA = Taxa;
      TREE cf._Fig._6 = [&R] ((Letharia_rugosa_V1:0.00349,((Letharia_rugosa_PM1:0.008815,Letharia_rugosa_PM2:9.32E-4):0.004304,((Letharia_rugosa_CL1:0.018912,(Letharia_rugosa_CP1:0.002937,Letharia_rugosa_CP2:0.009993):0.004428):8.06E-4,(Letharia_vulpina_SW1:0.004408,(Letharia_vulpina_H1:0.0,(Letharia_vulpina_IT1:0.0,Letharia_vulpina_IT2:0.00314):0.0,(Letharia_vulpina_CW8:0.001007,(Letharia_vulpina_AV2:0.0,Letharia_vulpina_AV3:0.0):0.0):0.0):0.002269):0.010715):0.0):5.17E-4):0.001677,((Letharia_gracilis_B4:0.004307,Letharia_gracilis_K141:0.00648,(Letharia_gracilis_K148:0.010273,(Letharia_gracilis_B1:0.004177,Letharia_gracilis_K1:0.00318):0.0):0.001083,(Letharia_gracilis_B2:0.004589,(Letharia_gracilis_B3:0.003193,Letharia_gracilis_B5:0.007448):1.49E-4):0.003715):0.002494,(((Letharia_barbata_CL2:0.004161,(Letharia_barbata_TB1:0.002054,(Letharia_barbata_TC1:0.002028,(Letharia_barbata_LP1:0.002039,(Letharia_barbata_OC1:0.002037,(Letharia_barbata_ST1:0.001955,Letharia_barbata_TB2:9.9E-4):7.81E-4):0.0):0.0):0.001594):8.6E-4):0.004776,((Letharia_lucida_CL3:0.008566,Letharia_lucida_SG1:0.001151):0.003798,(Letharia_lucida_EP1:0.0,(Letharia_lucida_DP2:3.39E-4,(Letharia_lucida_T3:0.004942,(Letharia_lucida_L20a:0.001843,Letharia_lucida_ST1:0.003582):0.00116):9.77E-4):0.002418):4.81E-4):0.010016):0.002434,(Letharia_lupina_DP1:0.007866,Letharia_lupina_L22b:0.001012,Letharia_lupina_MV1:0.001014,Letharia_lupina_SH1:0.005913,Letharia_lupina_ST2:0.009047,Letharia_lupina_T1:0.002286,Letharia_lupina_T23a:9.67E-4,Letharia_lupina_TC1:0.002033,(Letharia_lupina_CL1:0.002062,Letharia_lupina_T4:0.0):0.007235,((Letharia_lupina_AP1:0.0,(Letharia_lupina_BC1:0.001696,Letharia_lupina_T23b:0.009485):0.0):0.001587,(Letharia_lupina_K2:0.0,Letharia_lupina_SG1:0.0,Letharia_lupina_TB1:0.0):3.24E-4):0.0):0.006709):6.84E-4):0.001677);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr27653]


END;