#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 12, 2024; 9:13 GMT TreeBASE (cc) 1994-2008 Study reference: Broom J.E., Lindstrom S., Nelson W., Brodie J., Lynch M., Hwang M., Choi H., Miyata M., Kikuchi N., Oliveira M., Farr T., Neefus C., Mols-mortensen A., Milstein D., & Müller K. 2011. A new look at an ancient order: generic revision of the Bangiales. Journal of Phycology, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S11223] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=160; TAXLABELS Bangia_atropurpurea Bangia_fuscopurpurea_BB_Bf_1 Bangia_fuscopurpurea_CMNH_UM_BF1 Bangia_fuscopurpurea_France Bangia_fuscopurpurea_Taiwan Bangia_fuscopurpurea_WA Bangia_gloiopeltidicola Bangia_maxima Bangia_sp_BC_Can Bangia_sp_BCH Bangia_sp_BFK Bangia_sp_BGA Bangia_sp_BHH Bangia_sp_BJB Bangia_sp_BMW Bangia_sp_BNS Bangia_sp_BPL Bangia_sp_BRM Bangia_sp_BWP Bangia_sp_CH620 Bangia_sp_Ireland Bangia_sp_MA Bangia_sp_NWT Bangia_sp_NthBC_Can Bangia_sp_OR Bangia_sp_SB_Bf_1 Bangia_sp_TX_US Bangia_vermicularis Boreophyllum_aestivalis Boreophyllum_birdiae Boreophyllum_pseudocrassa Boreophyllum_sp_148 Chlidophyllon_kaspar Clymene_coleana Clymene_sp_OTA Clymene_sp_TTS Dione_arcuata Fuscifolium_papenfussii Fuscifolium_tasa Lysithea_adamsiae Minerva_aenigmata Miuraea_migitae Porphyra_dioica Porphyra_linearis Porphyra_lucasii Porphyra_purpurea Porphyra_sp_FIB Porphyra_sp_FIG Porphyra_sp_GDM Porphyra_sp_GRB108 Porphyra_sp_GRB145 Porphyra_sp_GRB178 Porphyra_sp_GRB287 Porphyra_sp_GRB368 Porphyra_sp_GRB488 Porphyra_sp_JBCH26A Porphyra_sp_LGD Porphyra_sp_MTR Porphyra_sp_OSK Porphyra_sp_SBA Porphyra_sp_SIR Porphyra_sp_TAS Porphyra_sp_WLR Porphyra_sp_ZBS Porphyra_sp_ZCE Porphyra_sp_ZDR Porphyra_sp_ZGR Porphyra_sp_ZIR Porphyra_sp_ZPP Porphyra_sp_ZSM Porphyra_umbilicalis Pseudobangia_kaycoleia Pyrophyllon_subtumens Pyropia_abbottiae Pyropia_acanthophora Pyropia_aeodis Pyropia_brumalis Pyropia_cf_crassa Pyropia_cf_pseudolinearis Pyropia_cf_thuretii Pyropia_cinnamomea Pyropia_columbina Pyropia_conwayae Pyropia_dentata Pyropia_denticulata Pyropia_fallax Pyropia_fucicola Pyropia_gardneri_Alaska Pyropia_gardneri_Mexico Pyropia_haitanensis Pyropia_hiberna Pyropia_hollenbergii Pyropia_ishigecola Pyropia_kanakaensis Pyropia_katadae_Japan Pyropia_katadae_Korea Pyropia_kinositae Pyropia_koreana Pyropia_kuniedae Pyropia_kurogii_Alaska Pyropia_kurogii_Japan Pyropia_lacerata Pyropia_leucosticta Pyropia_moriensis Pyropia_nereocystis Pyropia_onoi Pyropia_pendula Pyropia_perforata Pyropia_pseudolanceolata Pyropia_pseudolinearis_Japan Pyropia_pseudolinearis_Korea Pyropia_pulchella Pyropia_rakiura Pyropia_saldanhae Pyropia_seriata Pyropia_smithii Pyropia_sp_480 Pyropia_sp_485 Pyropia_sp_523 Pyropia_sp_551 Pyropia_sp_AKL Pyropia_sp_Antar68 Pyropia_sp_DRB Pyropia_sp_FAL Pyropia_sp_FIA Pyropia_sp_FIC Pyropia_sp_FID Pyropia_sp_FIE Pyropia_sp_GEP Pyropia_sp_MIG Pyropia_sp_PTK Pyropia_sp_Piaui Pyropia_sp_ROS054 Pyropia_sp_ROS125 Pyropia_sp_SMR Pyropia_sp_SSR053 Pyropia_sp_SSR091 Pyropia_sp_STI Pyropia_sp_TCH Pyropia_sp_WRO Pyropia_sp_ZLI Pyropia_spiralis Pyropia_suborbiculata Pyropia_tanegashimensis Pyropia_tenera Pyropia_tenuipedalis Pyropia_torta Pyropia_vietnamensis Pyropia_virididentata Pyropia_yezoensis Smithora_naiadum Wildemania_amplissima Wildemania_norrisii Wildemania_occidentalis Wildemania_schizophylla Wildemania_sp_Antar23 Wildemania_sp_FII Wildemania_sp_HM080 Wildemania_variegata_Alaska Wildemania_variegata_Japan ; END; BEGIN TREES; TITLE Bangiales_dual_gene; LINK TAXA = Taxa; TREE Bayesian = [&R] (Chlidophyllon_kaspar:0.036133,Pyrophyllon_subtumens:0.050167,(Smithora_naiadum:0.068681,(Minerva_aenigmata:0.031024,(Dione_arcuata:0.085831,((((Bangia_atropurpurea:0.010544,Bangia_sp_Ireland:0.00187):0.094773,(((((((Bangia_fuscopurpurea_France:0.005818,Bangia_sp_MA:0.005838):0.002172,Bangia_sp_BFK:0.001083):0.011363,Bangia_sp_BNS:0.01365):0.026564,(Bangia_sp_BMW:0.013206,(Bangia_sp_BRM:0.013838,Bangia_sp_CH620:0.032791):0.031176):0.005472):0.002796,Bangia_sp_BCH:0.022624):0.004301,Bangia_sp_BWP:0.025911):0.002961,(((Clymene_coleana:0.068617,(Clymene_sp_OTA:0.0018,Clymene_sp_TTS:0.002444):0.028879):0.062142,Porphyra_purpurea:0.071695):0.008117,(Porphyra_dioica:0.019461,(((((Porphyra_sp_ZSM:0.005249,(((Porphyra_sp_ZCE:0.010764,Porphyra_sp_ZPP:0.004965):0.002126,(((Porphyra_sp_ZBS:0.005043,Porphyra_sp_ZIR:0.004229):0.003327,Porphyra_sp_JBCH26A:0.005454):0.001004,Porphyra_sp_ZGR:0.007167):0.005066):0.003624,Porphyra_sp_ZDR:0.016664):0.006514):0.002278,(Porphyra_sp_GDM:0.024134,(Porphyra_sp_WLR:0.004387,Porphyra_sp_OSK:0.002263):0.004921):0.003202):0.001504,(Porphyra_sp_MTR:0.020446,(Porphyra_sp_LGD:0.007092,(Porphyra_sp_GRB488:0.00546,((Porphyra_sp_GRB178:0.002642,Porphyra_sp_GRB145:0.003708):0.003445,(Porphyra_sp_GRB368:0.003274,Porphyra_sp_GRB287:0.003593):0.003016,Porphyra_sp_GRB108:0.00304):0.003733):0.01211):0.002251):0.002652):0.001658,(((Porphyra_sp_TAS:0.006033,Porphyra_lucasii:0.006029):8.42E-4,Porphyra_sp_SIR:0.01012):0.002204,((Porphyra_sp_FIB:0.003811,Porphyra_sp_FIG:0.006795):0.001699,Porphyra_sp_SBA:0.009311):0.00172):0.001806):0.002602,Porphyra_umbilicalis:0.013313,Porphyra_linearis:0.002296):0.010477):0.017142):0.026136):0.009748):0.012561,(Lysithea_adamsiae:0.103906,((((Fuscifolium_papenfussii:0.068946,Fuscifolium_tasa:0.044967):0.058102,(((((Bangia_sp_BGA:0.006473,Bangia_fuscopurpurea_CMNH_UM_BF1:0.005321):0.004647,Bangia_fuscopurpurea_Taiwan:0.024435):0.006201,((Bangia_sp_NthBC_Can:0.010619,Bangia_fuscopurpurea_WA:0.001003):0.00378,Bangia_sp_TX_US:0.01617):0.0324):0.004203,((((Bangia_sp_BC_Can:0.004255,Bangia_fuscopurpurea_BB_Bf_1:0.006662):0.018566,Bangia_sp_BPL:0.066218):0.009016,Bangia_vermicularis:0.032436):0.005394,(Bangia_sp_SB_Bf_1:0.014281,Bangia_maxima:0.01676):0.007576):0.004891):0.009448,Bangia_sp_OR:0.011973):0.041472):0.011659,((Boreophyllum_sp_148:0.081325,((Boreophyllum_birdiae:0.012986,Boreophyllum_pseudocrassa:0.003882):0.002224,Boreophyllum_aestivalis:0.008462):0.031761):0.025432,((Bangia_sp_NWT:0.017158,((Bangia_sp_BJB:0.005031,Bangia_sp_BHH:0.003743):0.022343,Bangia_gloiopeltidicola:0.041699):0.00772):0.00495,(((Wildemania_sp_Antar23:0.02404,(Wildemania_sp_FII:0.002576,Wildemania_amplissima:0.002002):0.002108):0.016366,((Wildemania_schizophylla:0.020444,Wildemania_norrisii:0.018711):0.045413,(Wildemania_occidentalis:0.021078,(Wildemania_variegata_Alaska:0.006353,(Wildemania_sp_HM080:0.004499,Wildemania_variegata_Japan:0.006762):0.003708):0.005762):0.032071):0.004339):0.016972,(Pyropia_onoi:0.030297,((((Pyropia_gardneri_Alaska:0.001646,Pyropia_gardneri_Mexico:0.003079):0.026994,(Pyropia_suborbiculata:0.044202,(Pyropia_acanthophora:0.063675,((Pyropia_tanegashimensis:0.006832,Pyropia_denticulata:0.003571):0.036115,(Pyropia_sp_Piaui:0.002188,Pyropia_vietnamensis:0.003867):0.046265):0.009046):0.030542):0.011423):0.003709,((Pyropia_moriensis:0.008754,(Pyropia_lacerata:0.004179,(Pyropia_kuniedae:0.010381,Pyropia_pulchella:9.0E-4):0.018909):0.01478):0.003677,((Pyropia_sp_STI:0.008162,(Pyropia_tenuipedalis:0.00977,(Pyropia_katadae_Japan:0.005571,Pyropia_katadae_Korea:9.73E-4):0.005656):0.001813):0.006777,((Pyropia_koreana:0.001342,Pyropia_sp_GEP:0.007894):0.013992,((Pyropia_sp_DRB:0.003566,Pyropia_rakiura:0.008011):0.005685,(((Pyropia_yezoensis:0.004952,Pyropia_tenera:0.005026):0.002236,Pyropia_ishigecola:0.003376):0.001646,(Pyropia_kinositae:0.005272,(Pyropia_fucicola:0.007336,Pyropia_leucosticta:0.00777):0.004309):0.001609):0.004196):0.00253):0.014993):0.00204):0.00267):0.003703,(((Pyropia_perforata:0.041962,Pyropia_haitanensis:0.018667,Pyropia_dentata:0.014644,(Pyropia_seriata:0.031036,(Pyropia_cf_thuretii:0.033469,(Pyropia_spiralis:0.02854,(Pyropia_pendula:0.009655,Pyropia_hollenbergii:0.010098):0.012656):0.011491):0.018459):0.00496):0.003738,Pyropia_sp_ZLI:0.026944):0.014791,(((Pyropia_cf_pseudolinearis:0.009796,((Pyropia_cf_crassa:0.003088,Pyropia_kurogii_Alaska:0.005849):0.002945,(Pyropia_brumalis:0.004995,Pyropia_kurogii_Japan:0.007251):0.003232):0.003628):0.001832,((Pyropia_pseudolinearis_Korea:0.030969,Pyropia_pseudolinearis_Japan:0.006489):0.003988,((Pyropia_torta:0.006169,(Pyropia_abbottiae:0.001999,Pyropia_sp_523:0.002844):0.011149):0.014279,(Pyropia_smithii:0.015394,(Pyropia_sp_SSR053:0.006604,(Pyropia_sp_PTK:0.008968,(Pyropia_saldanhae:0.005849,(Pyropia_sp_FIE:0.007235,Pyropia_sp_FID:0.005046):0.001687):0.001057):0.001561):0.004954):0.005152):0.002193):0.002583):0.003915,((((Pyropia_sp_485:0.00918,(Pyropia_fallax:0.009325,Pyropia_conwayae:0.004343):0.002413):0.003942,(Pyropia_hiberna:0.004262,Pyropia_pseudolanceolata:0.009191):0.001557):0.003539,Pyropia_sp_480:0.004314):0.004103,(Pyropia_nereocystis:0.01476,(Pyropia_sp_FAL:0.003914,Pyropia_sp_MIG:0.005408):0.014038):0.006756,(Pyropia_kanakaensis:0.02951,(Pyropia_sp_TCH:0.022645,(((Pyropia_sp_SMR:0.029134,(Pyropia_columbina:0.004131,(Pyropia_sp_AKL:0.004352,Pyropia_cinnamomea:0.003258):0.003998):0.015514):0.006872,(Pyropia_aeodis:0.027943,(Pyropia_sp_FIC:0.025392,(Pyropia_sp_FIA:0.003348,Pyropia_sp_Antar68:0.007266):0.009866):0.005253):0.005051):0.001963,(Pyropia_sp_SSR091:0.013585,(Pyropia_sp_WRO:0.009335,((Pyropia_sp_ROS125:0.004521,Pyropia_sp_551:0.006133):0.014245,(Pyropia_sp_ROS054:0.0143,Pyropia_virididentata:0.019994):0.002718):0.025148):0.006842):0.001608):0.005165):0.014684):0.003108):0.00462):0.003567):0.005866):0.005063):0.018052):0.004962):0.018277):0.017104):0.006444,Pseudobangia_kaycoleia:0.115383):0.006899):0.012743):0.004502,Miuraea_migitae:0.053818):0.031514):0.029159):0.412945):0.080706); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr29854] END;