#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 18, 2024; 8:17 GMT

TreeBASE (cc) 1994-2008

Study reference:
Berbee M., Pirseyedi M., & Hubbard S. 1999. Cochliobolus phylogenetics and the origin
of known, highly virulent pathogens, inferred from ITS and glyceraldehyde-3-phosphate
dehydrogenase gene sequences. Mycologia, 91(6): 964-977.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S554]

BEGIN TAXA;
        TITLE  bootstrap_consensus_gpd;
        DIMENSIONS NTAX=54;
        TAXLABELS
            Alternaria_alternata
            Bipolaris_australis
            Bipolaris_indica
            Bipolaris_sacchari
            Bipolaris_sorghicola
            Bipolaris_urochloae
            Bipolaris_zeae
            Cochliobolus_australiensis
            Cochliobolus_carbonum
            Cochliobolus_cymbopogonis
            Cochliobolus_dactyloctenii
            Cochliobolus_eleusines
            Cochliobolus_ellisii
            Cochliobolus_hawaiiensis_Al7612
            Cochliobolus_hawaiiensis_Al8747
            Cochliobolus_heterostrophus_C5
            Cochliobolus_heterostrophus_HAW
            Cochliobolus_heterostrophus_HM3
            Cochliobolus_heterostrophus_HM8
            Cochliobolus_heterostrophus_X63
            Cochliobolus_homomorphus
            'Cochliobolus intermedius..797-1'
            'Cochliobolus intermedius..797-3'
            Cochliobolus_kusanoi
            Cochliobolus_lunatus_UAMH_1349
            Cochliobolus_lunatus_UAMH_4378
            Cochliobolus_lunatus_X58718
            Cochliobolus_luttrellii
            Cochliobolus_melinidis_Al8747
            Cochliobolus_melinidis_Al8795
            Cochliobolus_miyabeanus
            Cochliobolus_nisikadoi
            Cochliobolus_peregianensis
            'Cochliobolus perotidis Al7846-2'
            'Cochliobolus perotidis Al7846-5'
            Cochliobolus_ravenelii
            Cochliobolus_sativus
            Cochliobolus_verruculosus_..540
            Cochliobolus_verruculosus_..541
            Cochliobolus_victoriae_HV013
            Cochliobolus_victoriae_HV033
            Cochliobolus_victoriae_Macko_40
            Curvularia_affinis
            Curvularia_clavata
            Curvularia_gladioli
            Curvularia_gudauskasii
            Pyrenophora_japonica
            'Pyrenophora tritici-repentis'
            Setosphaeria_minor
            Setosphaeria_monoceras
            Setosphaeria_rostrata
            Stemphylium_alfalfae
            Stemphylium_botryosum
            Stemphylium_herbarum
            ;
END;

BEGIN TREES;
      TITLE Tb5565;
      LINK TAXA = bootstrap_consensus_gpd;
      TREE Fig._3 = [&R] (('Pyrenophora tritici-repentis',Pyrenophora_japonica),((Alternaria_alternata,((Stemphylium_alfalfae,Stemphylium_herbarum),Stemphylium_botryosum)),((((Bipolaris_indica,Cochliobolus_kusanoi),(('Cochliobolus intermedius..797-1','Cochliobolus intermedius..797-3'),Curvularia_clavata)),((((((Bipolaris_australis,Cochliobolus_ravenelii),(Curvularia_gladioli,Curvularia_gudauskasii)),((Cochliobolus_cymbopogonis,Cochliobolus_nisikadoi),Curvularia_affinis)),(Cochliobolus_lunatus_UAMH_1349,Cochliobolus_lunatus_UAMH_4378)),((Cochliobolus_australiensis,((Cochliobolus_dactyloctenii,(Cochliobolus_hawaiiensis_Al7612,Cochliobolus_hawaiiensis_Al8747)),('Cochliobolus perotidis Al7846-2','Cochliobolus perotidis Al7846-5'))),Cochliobolus_ellisii)),(Cochliobolus_lunatus_X58718,(Cochliobolus_verruculosus_..540,Cochliobolus_verruculosus_..541)))),((((((((((Bipolaris_sacchari,(Cochliobolus_heterostrophus_C5,Cochliobolus_heterostrophus_HAW,((Cochliobolus_heterostrophus_HM3,Cochliobolus_heterostrophus_X63),Cochliobolus_heterostrophus_HM8))),Bipolaris_urochloae),((Cochliobolus_melinidis_Al8795,Cochliobolus_melinidis_Al8747),Cochliobolus_miyabeanus)),Cochliobolus_peregianensis),Bipolaris_sorghicola),Cochliobolus_luttrellii),(Cochliobolus_eleusines,Cochliobolus_sativus)),(((Bipolaris_zeae,Cochliobolus_carbonum),Cochliobolus_victoriae_Macko_40),(Cochliobolus_victoriae_HV013,Cochliobolus_victoriae_HV033))),Cochliobolus_homomorphus),((Setosphaeria_minor,Setosphaeria_rostrata),Setosphaeria_monoceras)))));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr3455]


END;