#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 19, 2024; 19:31 GMT TreeBASE (cc) 1994-2008 Study reference: Goertzen L., & Theriot E. 2003. Effect of taxon sampling, character weighting, and combined data on the interpretation of relationships among the heterokont algae. Journal of Phycology, 39(2): 423-443. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S909] BEGIN TAXA; TITLE rbcL; DIMENSIONS NTAX=111; TAXLABELS Ahnfeltiopsis_gigart Alaria_esculent Antithamnion_sp Apedinella_radians Audouinella_arcuata Aureoumbra_lagunensis Bangia_sp Batrachospermum_disc Bonnemaisonia_hamifera Botrydiopsis_interced Botrydium_stolon Bumilleriopsis_filimis Calliblepharis_jubata Calyptrosphaera_sphae Caulacanthus_ustulatus Chattonella_subsalsa Chnoospora_implexa Chromulina_nebulo Chrysocapsa_vernal Chrysochromulina_hirta Chrysolepidomonas_den Coccoid_pelago_CC1395 Coccoid_pelago_CC1410 Coccolithus_pelagi Colpomenia_phaeodacty Compsopogon_coeruleus Cumagloia_anderson Cyanidioschyzon_merolae Cyanidium_caldar Cyanidium_caldarium Cylindrotheca_sp Delisea_pulchra Detonula_confer Ectocarpus_silicul Emiliania_huxleyi Endocladia_muricata Epipyxis_pulchra Eustigmatos_magna Galdieria_partita Galdieria_sulphuraria Gelidium_floridanum Gelidium_pacificum Gephyrocapsa_oceanica Gracilaria_tikvahiae Grateloupia_imbric Guillardia_theta Heterococcus_caes Heterosigma_akash Heterosiphonia_plumos Hibberdia_magna Hildenbrandia_rubra Hydrogenophaga_pseudo Hypnea_spinella Isthmoplea_sphaeropho Laurencia_obtusa Leptonematella_fasci Mallomonas_asmundae Mischococcus_sphaer Nannochlorop_CCMP531 Nannochlorop_CCMP533 Nannochlorop_salin Odontella_sinensis Palmaria_palmata Pavlova_salina Pelagococcus_subvirid Pelagomonas_calceolata Petalonia_binghami Petalonia_fascia Phaeodactylum_tricor Phaeoschizo_mucosa Phaeothamnion_confer Pilayella_littoral Pleurochloridel_botry Pleurochrysis_carterae Porphyra_purpur Porphyridium_aerug Pseudopedinella_elastic Psilosiphon_scoparium Pulvinaria_sp_CCMP292 Ralstonia_eutropha Renouxia_antillana Rhizochrom_CCMP237 Rhizosolenia_setigera Rhodobacter_sphaeroides Rhodogorgon_carriebow Rhodymenia_pseudopalm Sarcinochrysis_marina Sarcodiotheca_gaudich Scytosiphon_loment Scytosiphon_tenellus Skeletonema_costatum Solieria_filliformis Solieria_pacifica Stichogloea_doeder Stichogloea_globos Synura_uvella Tetrasporopsis_fus Thalassiosira_norden Thalassiosira_pseudo Thiobacillus_ferro Thorea_violacea Tribonema_intermixtum Turbinaria_ornata Umbilicosphaera_sibog Unidentified_diatom Vacuolaria_virescens Vaucheria_bursata Vischeria_helvetica Xanthobacter_flavus Xanthonema_debile pacifica_CCMP1866 ; END; BEGIN TREES; TITLE Tb6295; LINK TAXA = rbcL; TREE rbcL_tree = [&R] (Rhodobacter_sphaeroides,(((((((((((Nannochlorop_CCMP533,Nannochlorop_CCMP531),Nannochlorop_salin),(Eustigmatos_magna,Vischeria_helvetica)),(Chromulina_nebulo,(((Chrysocapsa_vernal,Hibberdia_magna),(Epipyxis_pulchra,Chrysolepidomonas_den)),(Mallomonas_asmundae,Synura_uvella)))),(((((Ectocarpus_silicul,(((Petalonia_binghami,(Petalonia_fascia,Scytosiphon_tenellus)),(Colpomenia_phaeodacty,Scytosiphon_loment)),Chnoospora_implexa)),(Pilayella_littoral,(Leptonematella_fasci,Isthmoplea_sphaeropho))),Alaria_esculent),Turbinaria_ornata),((((Tetrasporopsis_fus,(Vaucheria_bursata,((((Xanthonema_debile,(Tribonema_intermixtum,Bumilleriopsis_filimis)),Botrydium_stolon),(Mischococcus_sphaer,Botrydiopsis_interced)),Heterococcus_caes))),((Phaeoschizo_mucosa,(Stichogloea_globos,Stichogloea_doeder)),Phaeothamnion_confer)),Pleurochloridel_botry),(((Chattonella_subsalsa,Heterosigma_akash),Vacuolaria_virescens),(((((((Odontella_sinensis,Rhizosolenia_setigera),((Thalassiosira_norden,Detonula_confer),Skeletonema_costatum)),(Unidentified_diatom,Cylindrotheca_sp)),Phaeodactylum_tricor),pacifica_CCMP1866),Thalassiosira_pseudo),(((Pulvinaria_sp_CCMP292,Sarcinochrysis_marina),((Coccoid_pelago_CC1395,Pelagococcus_subvirid),Pelagomonas_calceolata)),(Coccoid_pelago_CC1410,Aureoumbra_lagunensis))))))),(((((((Delisea_pulchra,Bonnemaisonia_hamifera),((((((Solieria_pacifica,Solieria_filliformis),Sarcodiotheca_gaudich),((Hypnea_spinella,Calliblepharis_jubata),Caulacanthus_ustulatus)),(Hildenbrandia_rubra,Ahnfeltiopsis_gigart)),Endocladia_muricata),(((Antithamnion_sp,Heterosiphonia_plumos),Laurencia_obtusa),(Grateloupia_imbric,Rhodymenia_pseudopalm)))),((Gelidium_floridanum,Gelidium_pacificum),Gracilaria_tikvahiae)),(Rhodogorgon_carriebow,Renouxia_antillana)),(((Thorea_violacea,Cumagloia_anderson),(Batrachospermum_disc,Psilosiphon_scoparium)),((Palmaria_palmata,Audouinella_arcuata),(Porphyra_purpur,Bangia_sp)))),((Cyanidium_caldar,(Galdieria_partita,Galdieria_sulphuraria)),(Cyanidium_caldarium,Cyanidioschyzon_merolae))),(Porphyridium_aerug,Compsopogon_coeruleus))),Guillardia_theta),((Apedinella_radians,Pseudopedinella_elastic),Rhizochrom_CCMP237)),(((Coccolithus_pelagi,(Chrysochromulina_hirta,((Emiliania_huxleyi,Gephyrocapsa_oceanica),(Umbilicosphaera_sibog,Calyptrosphaera_sphae)))),Pleurochrysis_carterae),Pavlova_salina)),(Hydrogenophaga_pseudo,Thiobacillus_ferro)),Ralstonia_eutropha),Xanthobacter_flavus); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr4055] END;