#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on April 19, 2024; 7:24 GMT

TreeBASE (cc) 1994-2008

Study reference:
Husník F., Chrudimský T., & Hypša V. 2011. Multiple Origins of Endosymbiosis within
the Enterobacteriaceae (γ-Proteobacteria): Convergence of Complex Phylogenetic
Approaches. BMC Biology, 9: 87.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S11451]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=50;
        TAXLABELS
            Arsenophonus_nasoniae
            Baumannia_cicadellinicola
            Blochmannia_floridanus
            Blochmannia_pennsylvanicus
            Buchnera_aphidicola_str._APS
            Buchnera_aphidicola_str._Bp
            Buchnera_aphidicola_str._Cc
            Buchnera_aphidicola_str._Sg
            Citrobacter_koseri
            Citrobacter_rodentium
            Cronobacter_sakazakii
            Cronobacter_turicensis
            Dickeya_dadantii_Ech586
            Dickeya_dadantii_Ech703
            Dickeya_zeae
            Edwardsiella_ictaluri
            Edwardsiella_tarda
            Enterobacter_cloacae
            Enterobacter_sp._638
            Erwinia_amylovora_ATCC_49946
            Erwinia_amylovora_CFBP1430
            Erwinia_billingiae
            Erwinia_pyrifoliae
            Erwinia_tasmaniensis
            Escherichia_coli
            Haemophilus_influenzae
            Hamiltonella_defensa
            Ishikawaella_capsulata
            Klebsiella_pneumoniae
            Klebsiella_variicola
            Pantoea_ananatis
            Pasteurella_multocida
            Pectobacterium_atrosepticum
            Pectobacterium_carotovorum
            Pectobacterium_wasabiae
            Photorhabdus_asymbiotica
            Photorhabdus_luminescens
            Proteus_mirabilis
            Pseudomonas_aeruginosa
            Regiella_insecticola
            Riesia_pediculicola
            Salmonella_enterica
            Serratia_proteamaculans
            Sodalis_glossinidius
            Vibrio_cholerae
            Wigglesworthia_glossinidia
            Xanthomonas_axonopodis
            Xenorhabdus_bovienii
            Xenorhabdus_nematophila
            Yersinia_pestis
            ;
END;

BEGIN TREES;
      TITLE 69_genes_NA_GTR_MrBayes;
      LINK TAXA = Taxa;
      TREE NA_GTR_BI = [&R] (Xanthomonas_axonopodis:0.43376,(Pseudomonas_aeruginosa:0.218121,((Vibrio_cholerae:0.318014,(Haemophilus_influenzae:0.21663,Pasteurella_multocida:0.153723)1.00:0.368452)0.50:0.090968,((Edwardsiella_tarda:0.012009,Edwardsiella_ictaluri:0.023959)1.00:0.076498,(Sodalis_glossinidius:0.155962,(((Pantoea_ananatis:0.111333,(Erwinia_billingiae:0.074519,(Erwinia_tasmaniensis:0.038098,(Erwinia_pyrifoliae:0.023986,(Erwinia_amylovora_ATCC_49946:2.6E-5,Erwinia_amylovora_CFBP1430:4.3E-5)1.00:0.029689)1.00:0.018251)1.00:0.044997)1.00:0.026589)1.00:0.027073,((((Citrobacter_rodentium:0.044608,(Escherichia_coli:0.064597,(Salmonella_enterica:0.05238,Citrobacter_koseri:0.043929)1.00:0.008915)1.00:0.00664)1.00:0.017132,(Enterobacter_sp._638:0.070416,Enterobacter_cloacae:0.041484)1.00:0.027098)1.00:0.008605,(Klebsiella_variicola:0.018145,Klebsiella_pneumoniae:0.016288)1.00:0.04074)1.00:0.017452,(Cronobacter_turicensis:0.019849,Cronobacter_sakazakii:0.022963)1.00:0.047137)1.00:0.032429)1.00:0.019789,(((Pectobacterium_carotovorum:0.026124,(Pectobacterium_atrosepticum:0.030875,Pectobacterium_wasabiae:0.033009)1.00:0.015801)1.00:0.085557,(Dickeya_dadantii_Ech703:0.091582,(Dickeya_dadantii_Ech586:0.04434,Dickeya_zeae:0.034081)1.00:0.039709)1.00:0.033872)1.00:0.020292,(Serratia_proteamaculans:0.080798,(((Proteus_mirabilis:0.195589,Arsenophonus_nasoniae:0.280205)1.00:0.072813,((Xenorhabdus_bovienii:0.068786,Xenorhabdus_nematophila:0.074432)1.00:0.06486,(Photorhabdus_asymbiotica:0.063632,Photorhabdus_luminescens:0.056356)1.00:0.078072)1.00:0.021197)1.00:0.06736,(Yersinia_pestis:0.102058,(Regiella_insecticola:0.282275,(Hamiltonella_defensa:0.397626,(Baumannia_cicadellinicola:0.547227,(Ishikawaella_capsulata:0.665076,((Blochmannia_floridanus:0.556827,Blochmannia_pennsylvanicus:0.290668)1.00:0.432233,((Buchnera_aphidicola_str._Sg:0.278368,Buchnera_aphidicola_str._APS:0.255397)1.00:0.33134,(Buchnera_aphidicola_str._Bp:0.760674,(Buchnera_aphidicola_str._Cc:1.23239,(Riesia_pediculicola:1.45409,Wigglesworthia_glossinidia:0.97001)1.00:0.226544)0.83:0.1235)0.83:0.122164)1.00:0.241314)1.00:0.10424)1.00:0.092787)1.00:0.163067)1.00:0.076479)1.00:0.088736)0.50:0.041347)0.50:0.040363)0.50:0.028627)0.50:0.010523)0.50:0.013749)0.50:0.014695)0.50:0.050127)1.00:0.198192):0.0);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr43829]


END;