#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 28, 2024; 10:25 GMT TreeBASE (cc) 1994-2008 Study reference: Nosratinia S., Shevock J.R., & Mishler B. 2011. Phylogenetic relationships of Yunnanobryon (Musci: Regmatodontaceae). The Bryologist, 114. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S11618] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=237; TAXLABELS Abietinella_abietina_AY907953 Acrocladium_auriculatum_AY306854 Acroporium_pungens_AY908207 Actinothuidium_hookeri_AY908335 Aerobryidium_aureonitens_AY306857 Aerobryum_speciosum_AY306861 Aerolindigia_capillacea_AY908303 Alsia_californica_AY908258 Amblystegium_serpens_AY908237 Andoa_berthelotiana_AY908179 Anomodon_viticulosus_AY908201 Aptychella_proligera_AY908228 Aptychopsis_pyrrophylla_AY908212 Baldwiniella_kealeensis_AY908590 Barbellopsis_trichophora_AY908288 Benitotania_elimbata_AY449661 Bissetia_lingulata_AY908352 Boulaya_mitteni_AY908338 Brachelyma_subulatum_AF306998 Braithwaitea_sulcata_AY524469 Brotherella_recurvans_AY908227 Bryoandersonia_illecebra_AY908317 Bryocrumia_andersonii_AY908196 Bryonorrisia_acutifolia_AY908553 Bryostreimannia_turgida_AY908556 Callicladium_haldanianum_AY908561 Calliergon_cordifolium_AF469844 Calliergonella_cuspidata_AY908183 Calyptothecium_praelongum_AY908594 Camptochaete_arbuscula_AY306934 Campyliadelphus_stellatus_AY908248 Campylophyllum_halleri_AY908252 Caribaeohypnum_polypterum_AY908347 Catagoniopsis_berteroana_AY908200 Catagonium_nitens_AF307003 Chaetomitriopsis_glaucocarpa_AY908603 Chaetomitrium_borneense_AY306880 Chionostomum_rostratum_AY908210 Circulifolium_microdendron_AY908268 Cirriphyllum_cirrosum_AY908310 Claopodium_whippleanum_AY908294 Clastobryophilum_bogoricum_AY908208 Clastobryopsis_planula_AY908229 Clastobryum_tenuirameum_AY908230 Colobodontium_vulpinum_AY908215 Conardia_compacta_AY908568 Cratoneuron_filicinum_AY908250 Cratoneuropsis_relaxa_AY908244 Crosbya_straminea_AY306887 Cryptoleptodon_longisetus_AY908260 Cryptopapillaria_penicillata_AY908292 Ctenidium_molluscum_AY907954 Curvicladium_kurzii_AY908266 Cyathophorum_bulbosum_AY306889 Cyptodon_muelleri_AY908586 Cyptodontopsis_obtusifolia_AY908588 'Cyrto-hypnum schistocalyx AY908336' Dendroalsia_abietina_AY908185 Dendrocryphaea_cuspidata_AY908587 Dendropogonella_rufescens_AY908562 Dichelyma_falcatum_AY908318 Dimerodontium_balansae_AY907952 Dimorphocladon_borneense_AY306898 Dixonia_thamnioides_AY907956 Dolichomitra_cymbifolia_AY908344 Dolichomitriopsis_diversiformis_AY908329 Donnellia_commutata_AY908211 Dozya_japonica_AY908262 Ectropothecium_leptochaeton_AY908558 Elmeriobryum_philippinense_AY908323 Eriodon_conostomus_AY908239 Erythrodontium_longisetum_AY908256 Eulacophyllum_cultelliforme_AY908197 Eurhynchiella_acanthophylla_AY908299 Eurohypnum_leptothallum_AY908203 Fabronia_pusilla_AY908199 Fauriella_tenuis_AY908233 Foreauella_orthothecia_AY908560 Forsstroemia_trichomitria_AM990365 Garovaglia_elegans_AY306915 Gradsteinia_andicola_AY908246 Habrodon_perpusillus_AY908293 Hamatocaulis_vernicosus_AY908251 Handeliobryum_sikkimense_AY908267 Haplohymenium_triste_AY908202 Helodium_blandowii_AY908339 Henicodium_geniculatum_AY908563 Herpetineuron_toccoae_AY908566 Heterophyllium_affine_AY908577 Homalia_trichomanoides_AY908276 Homaliodendron_flabellatum_AY908271 Hookeria_acutifolia_AY306929 Horikawaea_redfearnii_AY908600 Horridohypnum_mexicanum_AY908349 Hydropogon_fontinaloides_AY908216 Hygrohypnum_smithii_AY908620 Hylocomiastrum_pyrenaicum_AY908181 Hylocomiopsis_cylindracarpa_AY908342 Hylocomium_splendens_AY908280 Hymenodon_pilifer_AY908176 Hypnobartlettia_fontana_AY908245 Hypnum_cupressiforme_DQ467883 Ischyrodon_lepturus_AY908591 Isocladiella_surcularis_AY908204 Isodrepanium_lentulum_AY907964 Isothecium_myosuroides_AY306933 Jaegerina_scariosa_AY908601 Juratzkaeella_sinensis_AY908198 Lembophyllum_divulsum_AY306936 Leptodictyum_riparium_AY907967 'Leptopterigynandrum austro-alpinum AY908190' Lepyrodontopsis_trichophylla_AY907965 Lescuraea_radicosa_AY908326 Leskeadelphus_bolivianus_AY907948 Leskeella_nervosa_AY908325 Leucodon_sciuroides_AY908186 Leucomium_strumosum_AY306943 Levierella_fabroniacea_AY907961 Limbella_tricosta_AY908572 Lindbergia_brachyptera_AY907949 Lindigia_aciculata_AY908304 Loeskeobryum_brevirostre_AY908278 Macrothamnium_macrocarpum_AY908182 Mahua_enervis_AY908319 Mesochaete_undulata_AY631154 Mesonodon_flavescens_AY908255 Metaneckera_menziesii_AY908264 Meteoridium_remotifolium_AY306949 Meteoriella_soluta_AY306950 Meteorium_illecebrum_AY908187 Mittenothamnium_reptans_AY908346 Muellerobryum_whiteleggei_AY908602 Myurium_hochstetteri_AY908180 Myuroclada_maximowiczii_AY908309 Neckera_pennata_AY908265 Neodicladiella_pendula_AY908284 Neodolichomitra_yunnanensis_AY908297 Neolindbergia_cladomnioides_AY908194 Noguchiodendron_sphaerocarpum_AY907958 Oedicladium_doii_AY908592 Okamuraea_hakoniensis_AY908311 Orthorrhynchium_elegans_AY908612 Orthostichella_pentasticha_AY907962 Orthostichidium_involutifolium_AY908195 Orthostichopsis_tetragona_AY908192 Orthotheciella_varia_AY908238 Orthothecium_chryseum_AY907966 Oxyrrhynchium_rugosipes_AY908315 Palamocladium_leskeoides_AY908296 Palisadula_chrysophylla_AY908593 Papillidiopsis_complanata_AY908220 Paranapiacabaea_paulista_AY908218 Penzigiella_cordata_AY306972 Phyllodon_truncatulus_AY908604 Phyllogonium_fulgens_AY908193 Pilotrichopsis_dentata_AY908599 Pinnatella_piniformis_AY907963 Pireella_angustifolia_AY908565 Plagiothecium_cavifolium_AY908321 Platygyriella_aurea_AY908575 Platyhypnidium_riparioides_AY908298 Platylomella_lescurii_AY908337 Pleuroziopsis_ruthenica_AY908571 Pleurozium_schreberi_AY908281 Porothamnium_arbusculans_AY908277 Porotrichodendron_nitidum_AY908273 Porotrichopsis_flacca_AY908275 Porotrichum_longirostre_AY908274 Potamium_lonchophyllum_AY908221 Pseudocalliergon_angustifolium_AY908242 Pseudocryphaea_domingensis_AY908188 Pseudoleskea_andina_AY908257 Pseudoleskeella_tectorum_AY907950 Pseudoleskeopsis_imbricata_AY908582 Pseudotaxiphyllum_elegans_AY908578 Pseudotrachypus_martinicensis_AY306982 Pseudotrismegistia_perundulata_AY908618 Pterigynandrum_filiforme_AY908189 Pterobryella_praenitens_AF307002 Pterobryopsis_stolonacea_AY908595 Pterogonidium_pulchellum_AY908232 Pterogoniopsis_cylindrica_AY908213 Pterogonium_gracile_AY907970 Ptychodium_plicatum_AY908327 Puiggariopsis_aurifolia_AY908348 Pulchrinodus_inflatus_AY907975 Pylaisia_polyantha_AY907960 Racopilum_cuspidigerum_AY524477 Radulina_borbonica_AY908223 Rauiella_lagoensis_AY908340 Regmatodon_declinatus_AY908191 Renauldia_mexicana_AY908333 Rhacopilopsis_trinitensis_AY908225 Rhaphidostichum_schwaneckeanum_AY908222 Rhizogonium_pennatum_AY631170 Rhynchostegium_serrulatum_AY908301 Rhytidiadelphus_triquetrus_AY908279 Rhytidium_rugosum_AY907951 Rigodiadelphus_robustus_AY908569 Rigodium_toxarion_AY908331 Rozea_pterogonioides_AY907957 Rutenbergia_madagassa_AY908605 Sauloma_tenella_AY306987 Schimperobryum_splendidissimum_AY306988 Schofieldiella_micans_isolate_AY908235 Schroeterella_zygodonta_AY908209 Schwetschkea_grateloupii_AY908305 Scleropodium_obtusifolium_AY306989 Scorpidium_scorpioides_AY908584 Sematophyllum_demissum_AY908214 Sphaerotheciella_sphaerocarpa_AY908589 Spiridentopsis_longissima_AY908564 Steerecleus_serrulatus_AY908302 Stenocarpidiopsis_salicicola_AY908307 Stereophyllum_radiculosum_DQ467885 Struckia_argentata_AY908320 Symphyodon_imbricatifolius_AY306999 Symphysodontella_cylindracea_AY908597 Taiwanobryum_speciosum_AY908272 Taxiphyllopsis_iwatsukii_AY908351 Thamniopsis_incurva_AY449668 Thuidiopsis_furfurosa_AY908341 Toloxis_imponderosa_AY908289 Tomentypnum_falcifolium_AY908567 Trachybryum_megaptilum_AY908312 Trachyloma_planifolium_AY631172 Trachyphyllum_gastrodes_AY908236 Trachypodopsis_serrulata_AY307008 Trachypus_bicolor_AY908290 Tripterocladium_leucocladulum_AY908334 Vesicularia_vesicularis_AY908559 Vittia_pachyloma_AY908240 Warburgiella_leucocytus_AY908219 Warnstorfia_exannulata_AY907968 Weymouthia_mollis_AY307013 Wijkia_extenuata_AY908205 Yunnanobryon_sp. ; END; BEGIN TREES; TITLE TS1_rps4; LINK TAXA = Taxa; TREE TS1_rps4_MP = [&R] (((((Bryoandersonia_illecebra_AY908317,Colobodontium_vulpinum_AY908215,Schroeterella_zygodonta_AY908209,Trachyphyllum_gastrodes_AY908236,(Clastobryum_tenuirameum_AY908230,Aptychella_proligera_AY908228),(Pterogoniopsis_cylindrica_AY908213,Foreauella_orthothecia_AY908560)),(Circulifolium_microdendron_AY908268,Rhaphidostichum_schwaneckeanum_AY908222,((Wijkia_extenuata_AY908205,Isodrepanium_lentulum_AY907964),(Pterigynandrum_filiforme_AY908189,(((Rhizogonium_pennatum_AY631170,(Pseudocalliergon_angustifolium_AY908242,Paranapiacabaea_paulista_AY908218)),(Rauiella_lagoensis_AY908340,Clastobryopsis_planula_AY908229)),(Warburgiella_leucocytus_AY908219,((Penzigiella_cordata_AY306972,(Hygrohypnum_smithii_AY908620,Conardia_compacta_AY908568)),Sphaerotheciella_sphaerocarpa_AY908589,Schwetschkea_grateloupii_AY908305,Pterogonium_gracile_AY907970,Dozya_japonica_AY908262,Cirriphyllum_cirrosum_AY908310,Aptychopsis_pyrrophylla_AY908212,Acroporium_pungens_AY908207))))))),(Hamatocaulis_vernicosus_AY908251,(Dimerodontium_balansae_AY907952,Brachelyma_subulatum_AF306998),((Rhynchostegium_serrulatum_AY908301,((Pylaisia_polyantha_AY907960,(Mesonodon_flavescens_AY908255,Hypnobartlettia_fontana_AY908245)),(Radulina_borbonica_AY908223,(Pterobryopsis_stolonacea_AY908595,Brotherella_recurvans_AY908227)))),(Cyptodon_muelleri_AY908586,((Orthostichella_pentasticha_AY907962,Gradsteinia_andicola_AY908246),(Schimperobryum_splendidissimum_AY306988,((Levierella_fabroniacea_AY907961,Thamniopsis_incurva_AY449668,(Schofieldiella_micans_isolate_AY908235,Horikawaea_redfearnii_AY908600)),(Cryptoleptodon_longisetus_AY908260,Benitotania_elimbata_AY449661))))))),((Claopodium_whippleanum_AY908294,(Neckera_pennata_AY908265,(Trachybryum_megaptilum_AY908312,Braithwaitea_sulcata_AY524469))),(Rhytidiadelphus_triquetrus_AY908279,Platylomella_lescurii_AY908337),(Scorpidium_scorpioides_AY908584,Hylocomiastrum_pyrenaicum_AY908181),(Loeskeobryum_brevirostre_AY908278,Aerolindigia_capillacea_AY908303),Stenocarpidiopsis_salicicola_AY908307,Scleropodium_obtusifolium_AY306989,Palisadula_chrysophylla_AY908593,Palamocladium_leskeoides_AY908296,Orthorrhynchium_elegans_AY908612,Neolindbergia_cladomnioides_AY908194,Meteoriella_soluta_AY306950,Eurohypnum_leptothallum_AY908203,Bryocrumia_andersonii_AY908196,Aerobryum_speciosum_AY306861),(Lepyrodontopsis_trichophylla_AY907965,(((Porotrichum_longirostre_AY908274,(Potamium_lonchophyllum_AY908221,Porotrichopsis_flacca_AY908275)),Porotrichodendron_nitidum_AY908273),((Taiwanobryum_speciosum_AY908272,Hookeria_acutifolia_AY306929),(Homalia_trichomanoides_AY908276,Haplohymenium_triste_AY908202),Oedicladium_doii_AY908592,Homaliodendron_flabellatum_AY908271,Cyathophorum_bulbosum_AY306889))),((Yunnanobryon_sp.,Renauldia_mexicana_AY908333),((Lindigia_aciculata_AY908304,(Forsstroemia_trichomitria_AM990365,(Vesicularia_vesicularis_AY908559,Elmeriobryum_philippinense_AY908323))),Rigodiadelphus_robustus_AY908569,Pseudoleskeopsis_imbricata_AY908582,Leskeella_nervosa_AY908325,Dimorphocladon_borneense_AY306898)),(Cratoneuropsis_relaxa_AY908244,(Campylophyllum_halleri_AY908252,((Pseudocryphaea_domingensis_AY908188,Habrodon_perpusillus_AY908293),Vittia_pachyloma_AY908240,Orthothecium_chryseum_AY907966,Hypnum_cupressiforme_DQ467883,Erythrodontium_longisetum_AY908256,Crosbya_straminea_AY306887,Amblystegium_serpens_AY908237))),((Noguchiodendron_sphaerocarpum_AY907958,Myurium_hochstetteri_AY908180),(Pinnatella_piniformis_AY907963,((Juratzkaeella_sinensis_AY908198,Horridohypnum_mexicanum_AY908349),(Orthostichopsis_tetragona_AY908192,(Symphysodontella_cylindracea_AY908597,Pterogonidium_pulchellum_AY908232,Camptochaete_arbuscula_AY306934))))),((Weymouthia_mollis_AY307013,Leptodictyum_riparium_AY907967),(Rhacopilopsis_trinitensis_AY908225,Jaegerina_scariosa_AY908601),Tripterocladium_leucocladulum_AY908334,Rozea_pterogonioides_AY907957,Donnellia_commutata_AY908211,Campyliadelphus_stellatus_AY908248),(((Stereophyllum_radiculosum_DQ467885,Lembophyllum_divulsum_AY306936,Eurhynchiella_acanthophylla_AY908299),Catagonium_nitens_AF307003),(Isocladiella_surcularis_AY908204,Fauriella_tenuis_AY908233),Baldwiniella_kealeensis_AY908590),(Porothamnium_arbusculans_AY908277,(((Garovaglia_elegans_AY306915,Ectropothecium_leptochaeton_AY908558),Cryptopapillaria_penicillata_AY908292),(Neodicladiella_pendula_AY908284,Meteoridium_remotifolium_AY306949,Alsia_californica_AY908258))),('Cyrto-hypnum schistocalyx AY908336',Dendropogonella_rufescens_AY908562,Spiridentopsis_longissima_AY908564,(Pseudoleskeella_tectorum_AY907950,Cyptodontopsis_obtusifolia_AY908588)),((Papillidiopsis_complanata_AY908220,Okamuraea_hakoniensis_AY908311),((Warnstorfia_exannulata_AY907968,'Leptopterigynandrum austro-alpinum AY908190'),Calliergonella_cuspidata_AY908183)),(Trachypodopsis_serrulata_AY307008,Pseudotrismegistia_perundulata_AY908618,Neodolichomitra_yunnanensis_AY908297,Barbellopsis_trichophora_AY908288,Aerobryidium_aureonitens_AY306857),(Phyllogonium_fulgens_AY908193,(Dixonia_thamnioides_AY907956,(Chionostomum_rostratum_AY908210,Chaetomitrium_borneense_AY306880))),((Trachyloma_planifolium_AY631172,Sauloma_tenella_AY306987,Pseudoleskea_andina_AY908257),Chaetomitriopsis_glaucocarpa_AY908603),(Rhytidium_rugosum_AY907951,(Meteorium_illecebrum_AY908187,Macrothamnium_macrocarpum_AY908182)),(Limbella_tricosta_AY908572,(Metaneckera_menziesii_AY908264,Eulacophyllum_cultelliforme_AY908197)),((Struckia_argentata_AY908320,Mesochaete_undulata_AY631154),Eriodon_conostomus_AY908239),(Tomentypnum_falcifolium_AY908567,(Taxiphyllopsis_iwatsukii_AY908351,Dolichomitra_cymbifolia_AY908344)),(Pseudotaxiphyllum_elegans_AY908578,(Thuidiopsis_furfurosa_AY908341,Dendroalsia_abietina_AY908185)),(Trachypus_bicolor_AY908290,Mittenothamnium_reptans_AY908346,Ctenidium_molluscum_AY907954),(Ptychodium_plicatum_AY908327,Platygyriella_aurea_AY908575),(Steerecleus_serrulatus_AY908302,Orthotheciella_varia_AY908238),(Pireella_angustifolia_AY908565,Orthostichidium_involutifolium_AY908195),(Lescuraea_radicosa_AY908326,Isothecium_myosuroides_AY306933),(Symphyodon_imbricatifolius_AY306999,Bryonorrisia_acutifolia_AY908553),(Myuroclada_maximowiczii_AY908309,Andoa_berthelotiana_AY908179),Toloxis_imponderosa_AY908289,Sematophyllum_demissum_AY908214,Rutenbergia_madagassa_AY908605,Rigodium_toxarion_AY908331,Racopilum_cuspidigerum_AY524477,Puiggariopsis_aurifolia_AY908348,Pterobryella_praenitens_AF307002,Pseudotrachypus_martinicensis_AY306982,Pleurozium_schreberi_AY908281,Pleuroziopsis_ruthenica_AY908571,Platyhypnidium_riparioides_AY908298,Plagiothecium_cavifolium_AY908321,Pilotrichopsis_dentata_AY908599,Phyllodon_truncatulus_AY908604,Oxyrrhynchium_rugosipes_AY908315,Mahua_enervis_AY908319,Lindbergia_brachyptera_AY907949,Leucomium_strumosum_AY306943,Leucodon_sciuroides_AY908186,Leskeadelphus_bolivianus_AY907948,Ischyrodon_lepturus_AY908591,Hymenodon_pilifer_AY908176,Hylocomium_splendens_AY908280,Hylocomiopsis_cylindracarpa_AY908342,Heterophyllium_affine_AY908577,Herpetineuron_toccoae_AY908566,Henicodium_geniculatum_AY908563,Helodium_blandowii_AY908339,Handeliobryum_sikkimense_AY908267,Fabronia_pusilla_AY908199,Dolichomitriopsis_diversiformis_AY908329,Dichelyma_falcatum_AY908318,Dendrocryphaea_cuspidata_AY908587,Curvicladium_kurzii_AY908266,Cratoneuron_filicinum_AY908250,Clastobryophilum_bogoricum_AY908208,Caribaeohypnum_polypterum_AY908347,Calyptothecium_praelongum_AY908594,Calliergon_cordifolium_AF469844,Callicladium_haldanianum_AY908561,Bryostreimannia_turgida_AY908556,Boulaya_mitteni_AY908338,Bissetia_lingulata_AY908352,Anomodon_viticulosus_AY908201,Actinothuidium_hookeri_AY908335,Acrocladium_auriculatum_AY306854,Abietinella_abietina_AY907953:2.0,Regmatodon_declinatus_AY908191:2.0),Muellerobryum_whiteleggei_AY908602,Hydropogon_fontinaloides_AY908216,Catagoniopsis_berteroana_AY908200):0.5,Pulchrinodus_inflatus_AY907975:0.5); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr46495] END;