#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 20, 2024; 6:57 GMT TreeBASE (cc) 1994-2008 Study reference: Inderbitzin P., Bostock R.M., Davis R.M., Usami T., Platt W.H., & Subbarao K.V. 2011. Phylogenetics and taxonomy of the fungal vascular wilt pathogen Verticillium, with the descriptions of five new species. PloS One, 6(12): e28341. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S11756] BEGIN TAXA; TITLE Untitled_Taxa_Block; DIMENSIONS NTAX=77; TAXLABELS Gibellulopsis_nigrescens_PD595 Gibellulopsis_nigrescens_PD596 Gibellulopsis_nigrescens_PD709 Gibellulopsis_nigrescens_PD710 Gibellulopsis_nigrescens_PD711 Gibellulopsis_nigrescens_PD712 Gibellulopsis_nigrescens_PD743 'Verticillium albo-atrum PD670' 'Verticillium albo-atrum PD693' 'Verticillium albo-atrum PD746' 'Verticillium albo-atrum PD747' 'Verticillium albo-atrum PD748' Verticillium_alfalfae_PD338 Verticillium_alfalfae_PD353 Verticillium_alfalfae_PD489 Verticillium_alfalfae_PD620 Verticillium_alfalfae_PD681 Verticillium_alfalfae_PD682 Verticillium_alfalfae_PD683 Verticillium_dahliae_PD322 Verticillium_dahliae_PD327 Verticillium_dahliae_PD502 Verticillium_isaacii_PD341 Verticillium_isaacii_PD343 Verticillium_isaacii_PD367 Verticillium_isaacii_PD437 Verticillium_isaacii_PD610 Verticillium_isaacii_PD611 Verticillium_isaacii_PD612 Verticillium_isaacii_PD613 Verticillium_isaacii_PD618 Verticillium_isaacii_PD619 Verticillium_isaacii_PD660 Verticillium_isaacii_PD661 Verticillium_isaacii_PD752 Verticillium_isaacii_PD753 Verticillium_klebahnii_PD347 Verticillium_klebahnii_PD401 Verticillium_klebahnii_PD407 Verticillium_klebahnii_PD458 Verticillium_klebahnii_PD657 Verticillium_klebahnii_PD658 Verticillium_klebahnii_PD659 Verticillium_longisporum_Allele_A1_PD348 Verticillium_longisporum_Allele_A1_PD356 Verticillium_longisporum_Allele_A1_PD687 Verticillium_longisporum_Allele_D1_PD348 Verticillium_longisporum_Allele_D2_PD356 Verticillium_longisporum_Allele_D3_PD687 Verticillium_nonalfalfae_PD592 Verticillium_nonalfalfae_PD616 Verticillium_nonalfalfae_PD626 Verticillium_nonalfalfae_PD744 Verticillium_nonalfalfae_PD745 Verticillium_nonalfalfae_PD808 Verticillium_nonalfalfae_PD809 Verticillium_nonalfalfae_PD810 Verticillium_nonalfalfae_PD811 Verticillium_nubilum_PD621 Verticillium_nubilum_PD702 Verticillium_nubilum_PD741 Verticillium_nubilum_PD742 Verticillium_tricorpus_PD593 Verticillium_tricorpus_PD594 Verticillium_tricorpus_PD685 Verticillium_tricorpus_PD690 Verticillium_tricorpus_PD703 Verticillium_zaregamsianum_PD586 Verticillium_zaregamsianum_PD731 Verticillium_zaregamsianum_PD733 Verticillium_zaregamsianum_PD734 Verticillium_zaregamsianum_PD735 Verticillium_zaregamsianum_PD736 Verticillium_zaregamsianum_PD737 Verticillium_zaregamsianum_PD738 Verticillium_zaregamsianum_PD739 Verticillium_zaregamsianum_PD740 ; END; BEGIN TREES; TITLE 'Combined ACT, EF, GPD, TS Result'; LINK TAXA = Untitled_Taxa_Block; TREE Four_locus_tree = [&R] (Gibellulopsis_nigrescens_PD595,((((((Verticillium_dahliae_PD322,(((Verticillium_dahliae_PD327,Verticillium_dahliae_PD502),Verticillium_longisporum_Allele_D2_PD356),Verticillium_longisporum_Allele_D3_PD687)),Verticillium_longisporum_Allele_D1_PD348),(Verticillium_longisporum_Allele_A1_PD348,Verticillium_longisporum_Allele_A1_PD356,Verticillium_longisporum_Allele_A1_PD687)),((Verticillium_alfalfae_PD338,Verticillium_alfalfae_PD353,Verticillium_alfalfae_PD489,Verticillium_alfalfae_PD620,Verticillium_alfalfae_PD681,Verticillium_alfalfae_PD682,Verticillium_alfalfae_PD683),(Verticillium_nonalfalfae_PD592,Verticillium_nonalfalfae_PD616,Verticillium_nonalfalfae_PD626,Verticillium_nonalfalfae_PD744,Verticillium_nonalfalfae_PD745,Verticillium_nonalfalfae_PD808,Verticillium_nonalfalfae_PD809,Verticillium_nonalfalfae_PD810,Verticillium_nonalfalfae_PD811))),(Verticillium_nubilum_PD621,Verticillium_nubilum_PD702,Verticillium_nubilum_PD741,Verticillium_nubilum_PD742)),((((((((((Verticillium_isaacii_PD341,(Verticillium_isaacii_PD610,((Verticillium_isaacii_PD611,(Verticillium_isaacii_PD618,Verticillium_isaacii_PD619)),Verticillium_isaacii_PD612))),Verticillium_isaacii_PD613),Verticillium_isaacii_PD367),Verticillium_isaacii_PD661),Verticillium_isaacii_PD660),(Verticillium_isaacii_PD343,Verticillium_isaacii_PD437,(Verticillium_isaacii_PD752,Verticillium_isaacii_PD753))),((Verticillium_klebahnii_PD347,Verticillium_klebahnii_PD401,Verticillium_klebahnii_PD458),(Verticillium_klebahnii_PD407,Verticillium_klebahnii_PD657,Verticillium_klebahnii_PD658,Verticillium_klebahnii_PD659))),((Verticillium_tricorpus_PD593,Verticillium_tricorpus_PD594),((Verticillium_tricorpus_PD685,Verticillium_tricorpus_PD690),Verticillium_tricorpus_PD703))),((((Verticillium_zaregamsianum_PD586,Verticillium_zaregamsianum_PD733,Verticillium_zaregamsianum_PD736,Verticillium_zaregamsianum_PD737,Verticillium_zaregamsianum_PD738,Verticillium_zaregamsianum_PD740),Verticillium_zaregamsianum_PD731,Verticillium_zaregamsianum_PD734),Verticillium_zaregamsianum_PD735),Verticillium_zaregamsianum_PD739)),('Verticillium albo-atrum PD670',('Verticillium albo-atrum PD693',('Verticillium albo-atrum PD746',('Verticillium albo-atrum PD747','Verticillium albo-atrum PD748')))))),(Gibellulopsis_nigrescens_PD596,((Gibellulopsis_nigrescens_PD709,(Gibellulopsis_nigrescens_PD711,Gibellulopsis_nigrescens_PD712)),(Gibellulopsis_nigrescens_PD710,Gibellulopsis_nigrescens_PD743)))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr47693] END;