#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 23, 2024; 16:18 GMT TreeBASE (cc) 1994-2008 Study reference: Barker F., Cibois A., Schikler P., Feinstein J., & Cracraft J. 2004. Phylogeny and diversification of the largest avian radiation. Proceedings of the National Academy of Sciences of the United States of America, 101(30): 11040-11045. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S11939] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=146; TAXLABELS Acanthisitta_chloris Aegithalos_iouschensis Aegithina_tiphia Ailuroedus_melanotis Alauda_arvensis Arcanator_orostruthus Artamus_cyanopterus Artamus_leucorhynchus Batis_mixta Bombycilla_garrulus Campylorhamphus_trochilirostris Cardinalis_cardinalis Catharus_ustulatus Certhia_familiaris Chaetops_frenatus Chaetorhynchus_papuensis Chloropsis_cochinchinensis Cinclus_cinclus Cisticola_anonyma Climacteris_erythrops Climacteris_picumnus Cnemophilus_loriae Colluricincla_harmonica Conopophaga_ardesiaca Coracias_caudata Coracina_lineata Coracina_novaehollandiae Corcorax_melanorhamphos Cormobates_leucophaea Corvinella_corvina Corvus_corone Corvus_coronoides Corvus_orru Cracticus_quoyi Culicicapa_ceylonensis Cyanocitta_cristata Daphoenositta_chrysoptera Dicaeum_aeneum Dicrurus_adsimilis Dicrurus_hottentottus Dryoscopus_cubla Elminia_nigromitrata Emberiza_schoeniclus Ephthianura_tricolor Eugerygone_rubra Falcunculus_frontatus Formicarius_colma Fringilla_montifringilla Furnarius_rufus Gallus_gallus Garrulax_milleti Grallina_cyanoleuca Gymnorhina_tibicen Hirundo_pyrrhonota Hirundo_rustica Hylophilus_poicilotis Icterus_parisorum Irena_cyanogaster Lalage_leucomela Lanius_excubitor Loboparadisaea_sericea Malurus_melanocephalus Manucodia_atra Manucodia_chalybata Melampitta_gigantea Melampitta_lugubris Melanocharis_nigra Melanocharis_versteri Melanodryas_cucullata Meliphaga_analoga Menura_novaehollandiae Microeca_papuana Mimus_patagonicus Mionectes_macconnellii Modulatrix_stictigula Monarcha_axillaris Monarcha_chrysomela Motacilla_cinerea Muscicapa_ferruginea Nectarinia_olivacea Neodrepanis_coruscans Oedistoma_iliolophum Oreoica_gutturalis Oriolus_larvatus Oriolus_xanthonotus Orthonyx_spaldingii Orthonyx_teminckii Pachycephala_hyperthra Pachycephala_soror Pachycephalopsis_poliosoma Paradisaea_raggiana Paramythia_montium Pardalotus_punctatus Pardalotus_striatus Parula_americana Parus_inornatus Parus_major Passer_montanus Peneothello_bimaculatus Pericrocotus_ethologus Philepitta_castanea Philesturnus_carunculatus Picathartes_gymnocephalus Pipra_coronata Pitohui_cristatus Pitta_sordida Ploceus_cucullatus Polioptila_caerulea Pomatostomus_halli Pomatostomus_isidorei Prionops_plumatus Promerops_cafer Prunella_collaris Psarisomus_dalhousiae Ptilogonys_cinereus Ptilonorhynchus_violaceus Ptiloris_magnificus Ptilorrhoa_caerulescens Pycnonotus_barbatus Regulus_calendula Regulus_satrapa Remiz_pendulinus Rhipidura_hyperthra Rupicola_rupicola Schiffornis_turdinus Scytalopus_magellanicus Sitta_carolinensis Smithornis_rufolateralis Sphecotheres_viridis Strepera_graculina Struthidea_cinerea Sturnus_vulgaris Sylvia_nana Telophorus_dohertyi Thamnophilus_nigrocinereus Thraupis_cyanocephala Tityra_semifasciata Toxorhamphus_novaeguineae Tregellasia_leucops Troglodytes_aedon Turdus_falklandii Tyrannus_tyrannus Vanga_curvirostris Vireo_philadelphia Yuhina_zantholeuca Zosterops_senegalensis ; END; BEGIN TREES; TITLE Passerine_RAG; LINK TAXA = Taxa; TREE Fig._1 = [&R] (Gallus_gallus:0.0580975,(Coracias_caudata:0.049315,(Acanthisitta_chloris:0.052216,(((Pitta_sordida:0.033811,(Smithornis_rufolateralis:0.024894,(Psarisomus_dalhousiae:0.022158,(Neodrepanis_coruscans:0.019308,Philepitta_castanea:0.018403):0.006128):0.006898):0.001228):0.008156,((Thamnophilus_nigrocinereus:0.031731,(Conopophaga_ardesiaca:0.027042,(Scytalopus_magellanicus:0.026993,(Formicarius_colma:0.027415,(Campylorhamphus_trochilirostris:0.014213,Furnarius_rufus:0.018414):0.007398):0.001088):0.002844):4.51E-4):0.006518,(Pipra_coronata:0.013742,((Mionectes_macconnellii:0.027731,Tyrannus_tyrannus:0.019608):0.002516,(Rupicola_rupicola:0.019665,(Schiffornis_turdinus:0.015677,Tityra_semifasciata:0.011959):0.002763):0.001142):8.81E-4):0.011684):0.003533):0.005131,(Menura_novaehollandiae:0.031982,(((Ailuroedus_melanotis:0.013878,Ptilonorhynchus_violaceus:0.012076):0.014567,(Cormobates_leucophaea:0.015177,(Climacteris_erythrops:0.008562,Climacteris_picumnus:0.008847):0.01138):0.015186):0.006162,((Malurus_melanocephalus:0.037798,((Ephthianura_tricolor:0.015744,Meliphaga_analoga:0.008166):0.012755,(Pardalotus_punctatus:0.00538,Pardalotus_striatus:0.004928):0.02004):0.002118):0.007361,((Pomatostomus_halli:0.006957,Pomatostomus_isidorei:0.004932):0.028409,((Orthonyx_spaldingii:0.009158,Orthonyx_teminckii:0.007584):0.017225,(((Chaetops_frenatus:0.018686,Picathartes_gymnocephalus:0.0174):0.008676,(((Eugerygone_rubra:0.02744,Pachycephalopsis_poliosoma:0.024245):0.004895,(Microeca_papuana:0.022544,(Tregellasia_leucops:0.005551,(Melanodryas_cucullata:0.004049,Peneothello_bimaculatus:0.005588):0.003374):0.01795):0.003457):0.003648,((((Culicicapa_ceylonensis:0.023643,Elminia_nigromitrata:0.022131):0.011607,(Remiz_pendulinus:0.044169,(Parus_inornatus:0.008785,Parus_major:0.007319):0.018279):0.003471):5.0E-4,(Alauda_arvensis:0.024978,((Aegithalos_iouschensis:0.01761,(Hirundo_pyrrhonota:0.010447,Hirundo_rustica:0.006869):0.019701):0.001683,(Pycnonotus_barbatus:0.029812,(Cisticola_anonyma:0.027797,(Sylvia_nana:0.021857,(Garrulax_milleti:0.01973,Zosterops_senegalensis:0.023794):0.003055):0.002984):8.05E-4):0.001578):0.00204):0.003207):0.001628,((((Certhia_familiaris:0.026182,Sitta_carolinensis:0.051362):0.001743,(Polioptila_caerulea:0.016658,Troglodytes_aedon:0.021246):0.005922):0.004829,((Regulus_calendula:0.010101,Regulus_satrapa:0.011839):0.022571,((Bombycilla_garrulus:0.022202,Ptilogonys_cinereus:0.015861):0.009003,((Mimus_patagonicus:0.018916,Sturnus_vulgaris:0.019928):0.007774,(Cinclus_cinclus:0.026251,(Muscicapa_ferruginea:0.024081,(Catharus_ustulatus:0.013936,Turdus_falklandii:0.012249):0.014749):0.002928):0.002003):0.008068):0.001389):6.36E-4):2.61E-4,((Promerops_cafer:0.020596,(Arcanator_orostruthus:0.006384,Modulatrix_stictigula:0.007744):0.010244):0.002981,((Dicaeum_aeneum:0.019848,Nectarinia_olivacea:0.022393):0.004304,((Chloropsis_cochinchinensis:0.022605,Irena_cyanogaster:0.02505):0.002364,(Prunella_collaris:0.020984,(Ploceus_cucullatus:0.018687,(Passer_montanus:0.021786,(Motacilla_cinerea:0.017006,(Fringilla_montifringilla:0.017785,((Icterus_parisorum:0.012412,Parula_americana:0.010617):0.005732,(Emberiza_schoeniclus:0.0144,(Cardinalis_cardinalis:0.011134,Thraupis_cyanocephala:0.013268):0.002777):0.001408):0.00354):0.002154):9.99E-4):0.001887):0.001589):0.006689):6.11E-4):0.001328):0.00122):4.13E-4):0.003684):0.001242):0.001362,(((Philesturnus_carunculatus:0.019793,(Cnemophilus_loriae:0.003709,Loboparadisaea_sericea:0.005365):0.018231):8.39E-4,((Melanocharis_nigra:0.00572,Melanocharis_versteri:0.005294):0.007562,(Oedistoma_iliolophum:0.010555,Toxorhamphus_novaeguineae:0.018189):0.001417):0.010093):0.001507,(Daphoenositta_chrysoptera:0.014002,((Yuhina_zantholeuca:0.020686,(Hylophilus_poicilotis:0.009553,Vireo_philadelphia:0.008735):0.004464):0.008652,((Pericrocotus_ethologus:0.022991,(Lalage_leucomela:0.012615,(Coracina_lineata:0.001303,Coracina_novaehollandiae:0.003647):0.005011):0.002987):0.004407,(((Falcunculus_frontatus:0.018352,Ptilorrhoa_caerulescens:0.021398):0.001016,(Colluricincla_harmonica:0.011332,(Pachycephala_hyperthra:0.00652,Pachycephala_soror:0.004951):0.010644):0.002129):3.75E-4,(((Oreoica_gutturalis:0.009396,Pitohui_cristatus:0.006281):0.011562,(Paramythia_montium:0.022502,(Sphecotheres_viridis:0.015521,(Oriolus_larvatus:0.005554,Oriolus_xanthonotus:0.002822):0.012429):0.003622):0.001014):4.64E-4,((((Artamus_cyanopterus:0.001603,Artamus_leucorhynchus:0.003013):0.019219,(Strepera_graculina:0.007662,(Cracticus_quoyi:3.05E-4,Gymnorhina_tibicen:0.002009):0.004336):0.002539):0.004032,(Batis_mixta:0.013392,(Prionops_plumatus:0.010682,Vanga_curvirostris:0.015509):0.001756,(Aegithina_tiphia:0.018811,(Dryoscopus_cubla:0.011442,Telophorus_dohertyi:0.020259):0.00264):7.93E-4):9.22E-4):0.004475,((Dicrurus_adsimilis:0.00276,Dicrurus_hottentottus:0.00529):0.010068,((Chaetorhynchus_papuensis:0.016504,Rhipidura_hyperthra:0.019353):0.003774,(((Corvinella_corvina:0.004908,Lanius_excubitor:0.00536):0.018491,(Cyanocitta_cristata:0.005,(Corvus_corone:0.002146,(Corvus_coronoides:6.04E-4,Corvus_orru:6.03E-4):0.001809):0.009096):0.005731):0.002619,(((Manucodia_atra:7.2E-4,Manucodia_chalybata:0.00174):0.009195,(Paradisaea_raggiana:0.003057,Ptiloris_magnificus:0.003272):0.003362):0.003872,((Corcorax_melanorhamphos:0.006828,Struthidea_cinerea:0.007724):0.006824,((Melampitta_gigantea:0.005831,Melampitta_lugubris:0.0041):0.007015,(Grallina_cyanoleuca:0.0124,(Monarcha_axillaris:0.006254,Monarcha_chrysomela:0.006178):0.006636):0.011315):0.001039):6.8E-4):0.001072):0.001317):3.54E-4):0.004):9.69E-4):7.88E-4):0.001432):0.001387):5.75E-4):0.004702):9.09E-4):0.001917):9.73E-4):0.002606):0.007337):0.003662):0.014218):0.006092):0.014699):0.0580975); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr48737] END;