#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 15, 2024; 19:53 GMT

TreeBASE (cc) 1994-2008

Study reference:
Derelle R., & Lang B.F. 2011. Rooting the eukaryotic tree with mitochondrial and
bacterial proteins. Molecular Biology and Evolution, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S12097]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=55;
        TAXLABELS
            Acanthamoeba_castellanii
            Acidiphilium_cryptum
            Arabidopsis_thaliana
            Batrachochytrium_dendrobatidis
            Blastocystis_sp.
            Brucella_abortus
            Capsaspora_owczarzaki
            Chorella_sp
            Cyanidioschyzon_merolae
            Dictyostelium_discoideum
            Dictyostelium_purpureum
            Drosophila_melanogaster
            Ectocarpus_siliculosus
            Ehrlichia_chaffeensis
            Emiliania_huxleyi
            Euglena_gracilis
            Galdieria_sulphuraria
            Granulibacter_bethesdensis
            Hartmannella_vermiformis
            Homo_sapiens
            Jakoba_libera
            Leishmania_major
            Magnetococcus_sp
            Magnetospirillum_magneticum
            Malawimonas_sp.
            Micromonas_sp
            Naegleria_gruberi
            Nematostella_vectensis
            Neorickettsia_sennetsu
            Ostreococcus_tauri
            Paramecium_sp.
            Pavlova_lutheri
            Perkinsus_marinus
            Phaeodactylum_tricornutum
            Physarum_polycephalum
            Physcomitrella_patens
            Phytophthora_sp.
            Pythium_ultimum
            Reclinomonas_americana
            Rhizaria_sp.
            Rhizopus_oryzae
            Rhodospirillum_centenum
            Rhodospirillum_rubrum
            Rickettsia_akari
            Roseobacter_denitrificans
            Sphingomonas_wittichii
            Spizellomyces_punctatus
            Sterkiella_histriomuscorum
            Tetrahymena_thermophila
            Thalassiosira_pseudonana
            Thecamonas_trahens
            Toxoplasma_gondii
            Trypanosoma_brucei
            Ustilago_maydis
            Wolbachia_endosymbiont_of_Culex
            ;
END;

BEGIN TREES;
      TITLE filtered_dataset;
      LINK TAXA = Taxa;
      TREE Fig._3b = [&R] ((((Jakoba_libera,Reclinomonas_americana),(Naegleria_gruberi,(Euglena_gracilis,(Leishmania_major,Trypanosoma_brucei)))),(((Cyanidioschyzon_merolae,Galdieria_sulphuraria),((Arabidopsis_thaliana,Physcomitrella_patens),(Chorella_sp,(Micromonas_sp,Ostreococcus_tauri)))),((Emiliania_huxleyi,Pavlova_lutheri),(((Perkinsus_marinus,Toxoplasma_gondii),(Sterkiella_histriomuscorum,(Paramecium_sp.,Tetrahymena_thermophila))),(Rhizaria_sp.,(Blastocystis_sp.,((Phytophthora_sp.,Pythium_ultimum),(Ectocarpus_siliculosus,(Phaeodactylum_tricornutum,Thalassiosira_pseudonana))))))))),((Acanthamoeba_castellanii,(Hartmannella_vermiformis,(Physarum_polycephalum,(Dictyostelium_discoideum,Dictyostelium_purpureum)))),((Malawimonas_sp.,Thecamonas_trahens),(((Batrachochytrium_dendrobatidis,Spizellomyces_punctatus),(Rhizopus_oryzae,Ustilago_maydis)),(Capsaspora_owczarzaki,(Nematostella_vectensis,(Drosophila_melanogaster,Homo_sapiens)))))));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr50054]


END;