#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 13, 2024; 9:24 GMT TreeBASE (cc) 1994-2008 Study reference: Kusumi J., Azuma H., Tzeng H., Chou L., Peng Y., Nakamura K., & Su Z. 2012. Phylogenetic analyses suggest a hybrid origin of the figs (Moraceae: Ficus) that are endemic to the Ogasawara (Bonin) Islands, Japan. Molecular Phylogenetics and Evolution, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S12233] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=137; TAXLABELS Ficus_ampelas_1 Ficus_ampelas_2 Ficus_benguetensis Ficus_boninsimae_1 Ficus_boninsimae_10 Ficus_boninsimae_11 Ficus_boninsimae_12 Ficus_boninsimae_13 Ficus_boninsimae_14 Ficus_boninsimae_15 Ficus_boninsimae_16 Ficus_boninsimae_17 Ficus_boninsimae_18 Ficus_boninsimae_19 Ficus_boninsimae_2 Ficus_boninsimae_20 Ficus_boninsimae_21 Ficus_boninsimae_22 Ficus_boninsimae_23 Ficus_boninsimae_24 Ficus_boninsimae_25 Ficus_boninsimae_3 Ficus_boninsimae_4 Ficus_boninsimae_5 Ficus_boninsimae_6 Ficus_boninsimae_7 Ficus_boninsimae_8 Ficus_boninsimae_9 Ficus_erecta_1 Ficus_erecta_10 Ficus_erecta_11 Ficus_erecta_12 Ficus_erecta_13 Ficus_erecta_14 Ficus_erecta_15 Ficus_erecta_16 Ficus_erecta_2 Ficus_erecta_3 Ficus_erecta_4 Ficus_erecta_5 Ficus_erecta_6 Ficus_erecta_7 Ficus_erecta_8 Ficus_erecta_9 Ficus_formosana_1 Ficus_formosana_10 Ficus_formosana_11 Ficus_formosana_12 Ficus_formosana_2 Ficus_formosana_3 Ficus_formosana_4 Ficus_formosana_5 Ficus_formosana_6 Ficus_formosana_7 Ficus_formosana_8 Ficus_formosana_9 Ficus_iidaiana_1 Ficus_iidaiana_10 Ficus_iidaiana_11 Ficus_iidaiana_12 Ficus_iidaiana_13 Ficus_iidaiana_14 Ficus_iidaiana_15 Ficus_iidaiana_16 Ficus_iidaiana_17 Ficus_iidaiana_18 Ficus_iidaiana_19 Ficus_iidaiana_2 Ficus_iidaiana_20 Ficus_iidaiana_21 Ficus_iidaiana_22 Ficus_iidaiana_23 Ficus_iidaiana_24 Ficus_iidaiana_25 Ficus_iidaiana_26 Ficus_iidaiana_27 Ficus_iidaiana_28 Ficus_iidaiana_29 Ficus_iidaiana_3 Ficus_iidaiana_30 Ficus_iidaiana_31 Ficus_iidaiana_32 Ficus_iidaiana_33 Ficus_iidaiana_34 Ficus_iidaiana_35 Ficus_iidaiana_36 Ficus_iidaiana_4 Ficus_iidaiana_5 Ficus_iidaiana_6 Ficus_iidaiana_7 Ficus_iidaiana_8 Ficus_iidaiana_9 Ficus_insipida_1 Ficus_insipida_2 Ficus_irisana Ficus_ischnopoda_1 Ficus_ischnopoda_2 Ficus_ischnopoda_3 Ficus_microcarpa_1 Ficus_microcarpa_2 Ficus_nipponica Ficus_nishimurae_1 Ficus_nishimurae_10 Ficus_nishimurae_2 Ficus_nishimurae_3 Ficus_nishimurae_4 Ficus_nishimurae_5 Ficus_nishimurae_6 Ficus_nishimurae_7 Ficus_nishimurae_8 Ficus_nishimurae_9 Ficus_pedunculosa_var._mearnsii_1 Ficus_pedunculosa_var._mearnsii_2 Ficus_pedunculosa_var._pedunculosa_1 Ficus_pedunculosa_var._pedunculosa_2 Ficus_pedunculosa_var._pedunculosa_3 Ficus_pumila Ficus_septica_1 Ficus_septica_2 Ficus_stenophylla_1 Ficus_stenophylla_2 Ficus_stenophylla_3 Ficus_superba_1 Ficus_superba_2 Ficus_tannoensis_1 Ficus_tannoensis_2 Ficus_tannoensis_3 Ficus_tannoensis_4 Ficus_vaccinioides_1 Ficus_vaccinioides_2 Ficus_vaccinioides_3 Ficus_vaccinioides_4 Ficus_variegata_1 Ficus_variegata_2 Ficus_virgata_1 Ficus_virgata_2 Ficus_yoponensis ; END; BEGIN TREES; TITLE ITS_region; LINK TAXA = Taxa; TREE Fig._3B = [&R] ((Ficus_yoponensis:0.008317907586883055,(Ficus_insipida_1,Ficus_insipida_2):0.0018787285370600593):0.03147665318750636,((Ficus_superba_2:0.0036042594958419355,Ficus_superba_1:0.0030700203065508053):0.012625736431600434,(((((Ficus_microcarpa_1:0.0016537959098019694,Ficus_microcarpa_2):0.05796433195310709,((Ficus_virgata_1,Ficus_virgata_2):0.012124561315028828,((Ficus_ampelas_1,Ficus_ampelas_2:0.00508213686969429):0.006920465328029174,Ficus_irisana:0.005092813713655775):0.002798720734768126):0.0026073652842534406):0.0017109155137427362,(Ficus_nishimurae_8:0.03314315145059146,(Ficus_iidaiana_2,(Ficus_iidaiana_1,Ficus_boninsimae_13:0.008014790842102437):0.0015941181759487333):0.025660542792953267):0.03695075646156104):0.0018468796943494764,(((Ficus_pedunculosa_var._mearnsii_2:0.0016974352154908862,((Ficus_pedunculosa_var._pedunculosa_1:0.0016993174669243105,Ficus_pedunculosa_var._pedunculosa_3:0.0034177738758960075),(Ficus_pedunculosa_var._pedunculosa_2,Ficus_pedunculosa_var._mearnsii_1))):0.019528097169033823,(Ficus_nipponica:0.0034366529078437985,Ficus_pumila:0.008511917286514459):0.00705317147485901):0.0019924319687178588,((Ficus_ischnopoda_1:0.003364901554281985,(Ficus_ischnopoda_2:0.0033736613046789488,Ficus_ischnopoda_3)):0.004630165290696625,((((Ficus_iidaiana_31:0.011869117217558886,Ficus_boninsimae_7:0.010155935758397905),(Ficus_boninsimae_8:0.005051888616885394,Ficus_nishimurae_6:0.00503906379241309)),(Ficus_iidaiana_24:0.006759004583391681,Ficus_boninsimae_9:0.005070243191003451)),((Ficus_iidaiana_13:0.005034221779553427,((((((Ficus_erecta_8,(((Ficus_erecta_4,((Ficus_erecta_5,Ficus_erecta_3),Ficus_erecta_6)),Ficus_erecta_9),(Ficus_erecta_2,(Ficus_erecta_7,(Ficus_erecta_11,Ficus_erecta_1))))),((((Ficus_iidaiana_5:0.003337191642167378,Ficus_erecta_16):0.001671433215018156,((((Ficus_formosana_9,((((Ficus_vaccinioides_4,(Ficus_vaccinioides_2,Ficus_vaccinioides_1)),Ficus_vaccinioides_3):0.0016657748646945886,Ficus_formosana_10:0.001667078818364448),((Ficus_formosana_2,Ficus_formosana_4),(Ficus_formosana_11,Ficus_formosana_5)))),Ficus_formosana_12),(Ficus_formosana_1:0.001665378174199525,(Ficus_formosana_8:0.0016588981275143522,(Ficus_formosana_6,Ficus_formosana_7)):0.003341636036652121)),Ficus_formosana_3:0.0033531093539273665):0.005057001122237947),(Ficus_erecta_10:0.0016717152438966015,((Ficus_tannoensis_4,Ficus_tannoensis_2):0.0016766883056589799,(Ficus_tannoensis_1,Ficus_tannoensis_3)):0.003360701040314676)),((Ficus_stenophylla_1:0.005068416017320929,(Ficus_stenophylla_3,Ficus_stenophylla_2)):0.0016754490763250113,Ficus_erecta_14:0.0016744159077544118))),Ficus_erecta_13:0.0016728635522137575),(Ficus_erecta_15:0.0016744161193952695,Ficus_erecta_12:0.0033518433255614183)),Ficus_iidaiana_6:0.0016727532578356685):0.0016710504635025492,(((Ficus_nishimurae_4,Ficus_iidaiana_14:0.006671136420710072):0.0016658745230823252,Ficus_iidaiana_10:0.005048295432277625),(((((Ficus_iidaiana_15,(Ficus_iidaiana_12,((Ficus_iidaiana_8,(((Ficus_iidaiana_9,(Ficus_nishimurae_3,(Ficus_nishimurae_5,Ficus_boninsimae_4))),Ficus_boninsimae_2),(Ficus_nishimurae_2,Ficus_iidaiana_11))),Ficus_iidaiana_7))),Ficus_boninsimae_5),Ficus_boninsimae_10),Ficus_iidaiana_16),(((Ficus_boninsimae_1:0.008356689864686503,(Ficus_boninsimae_25:0.01357638985325521,Ficus_boninsimae_3):0.0016623143459897627),(Ficus_boninsimae_11:0.001652771873560041,(Ficus_nishimurae_7:0.015163089379067227,(((((((Ficus_boninsimae_23:0.001637165264049556,Ficus_boninsimae_15:0.0016371672697923778):0.013526384379371245,Ficus_iidaiana_34:0.0033240689154288433):0.0016916856415940817,((((Ficus_iidaiana_27:0.01875812877780579,((((Ficus_iidaiana_30:0.004994329048893784,Ficus_boninsimae_19:0.0033117150947545027):0.0016822568432462576,((Ficus_iidaiana_32:0.011777670608682622,Ficus_nishimurae_9:0.005073213954079198):0.0016086361764796886,(Ficus_boninsimae_18:0.001651787168287136,Ficus_iidaiana_28:0.016771132273379577):0.0016801759287451007)),(Ficus_iidaiana_26:0.017016648708189003,Ficus_iidaiana_23:0.01509256636967271)),Ficus_boninsimae_24:0.008331763549075749):0.0016621712435942876),(Ficus_boninsimae_20:0.010052157784450635,Ficus_boninsimae_22:0.0066897645028058395)),(Ficus_boninsimae_14:0.005018572949021985,((Ficus_iidaiana_22:0.018517947843728122,(Ficus_iidaiana_36:0.005027208870844541,Ficus_iidaiana_20:0.011687318882911857):0.010242808160699862),((Ficus_boninsimae_21:0.010197145800716012,((Ficus_iidaiana_19:0.0016433104408698496,(Ficus_iidaiana_18,Ficus_iidaiana_29:0.004951825416342204):0.0016447583388496945),Ficus_iidaiana_17:0.001645843677263864):0.013640997359168239):0.0015742108432190705,Ficus_boninsimae_16:0.011777158290783726)):0.0016635973716338376)),((Ficus_iidaiana_33:0.011880665147289096,Ficus_iidaiana_21:0.00832983663825608):0.008726927003323448,(Ficus_boninsimae_17:0.010070354760740932,Ficus_iidaiana_25:0.015196494298404223):0.003435149386348632))):0.0016694996951646113,Ficus_nishimurae_10:0.00668057328839082),Ficus_iidaiana_35:0.008371467809151573):0.00165858807923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[! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr50303] END;