#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 19, 2024; 5:41 GMT TreeBASE (cc) 1994-2008 Study reference: Holstein N., & Renner S.S. 2011. A dated phylogeny and collection records reveal repeated biome shifts in the African genus Coccinia (Cucurbitaceae). BMC Evolutionary Biology, 11: 28. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S10856] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=69; TAXLABELS Coccinia_abyssinica_E_Westphal_and_JMC_Westphal_Stevels_1552_WAG Coccinia_abyssinica_E_Westphal_and_JMC_Westphal_Stevels_1951_WAG Coccinia_adoensis_AR_Torre_5337_M Coccinia_adoensis_DK_Harder_and_MG_Bingham_2584_MO Coccinia_adoensis_EA_Robinson_2944_M Coccinia_adoensis_H_Merxmueller_282_M Coccinia_adoensis_J_Pawek_6124_MO Coccinia_adoensis_LE_Davidson_3781_M Coccinia_adoensis_M_Sanane_375_M Coccinia_adoensis_R_Story_6283_M Coccinia_adoensis_RE_Gereau_and_CJ_Kayombo_3582_MO Coccinia_aurantiaca_M_Richards_20987_BR Coccinia_aurantiaca_N_Holstein_et_al_86_fem_M Coccinia_aurantiaca_PJ_Greenway_and_Kanuri_14811_M Coccinia_aurantiaca_sp5_SA_Robertson_1925_MO Coccinia_barteri_E_Achigan_Dako_06_NIA_294_GAT Coccinia_barteri_E_Achigan_Dako_07_NIA_809_GAT Coccinia_barteri_E_Achigan_Dako_07_NIA_899_GAT Coccinia_barteri_FJ_Fernandez_Casas_12077_MO Coccinia_barteri_JJ_Wieringa_6387_WAG Coccinia_barteri_MA_van_Bergen_490_WAG Coccinia_barteri_WJJO_de_Wilde_et_al_3736_MO Coccinia_grandiflora_H_Schaefer_05_302_M Coccinia_grandiflora_N_Holstein_et_al_98_M Coccinia_grandis_De_Wilde_22270_L Coccinia_grandis_H_Schaefer_05_258_M Coccinia_grandis_R_Mueller_sn_Aug_1999_M Coccinia_heterophylla_CCH_Jongkind_5905_WAG Coccinia_hirtella_N_Holstein_29_M Coccinia_hirtella_SS_Renner_and_A_Kocyan_2747_M Coccinia_keayana_CCH_Jongkind_et_al_6542_WAG Coccinia_keayana_FC_Straub_140_BR Coccinia_longicarpa_CCH_Jongkind_3970_WAG Coccinia_mackenii_RG_Strey_3762_M Coccinia_megarrhiza_I_Friis_et_al_2664_MO Coccinia_megarrhiza_JJFE_de_Wilde_4793_WAG Coccinia_megarrhiza_JJFE_de_Wilde_6501_WAG Coccinia_megarrhiza_PCM_Jansen_3471_WAG Coccinia_microphylla_JJFE_de_Wilde_and_MG_Gilbert_346_UPS Coccinia_microphylla_RB_Drummond_and_JH_Hemsley_4087_B Coccinia_mildbraedii_M_Reekmans_7399_BR Coccinia_mildbraedii_ulu_N_Holstein_et_al_76_M Coccinia_ogadensis_Thulin_et_al_11183_UPS Coccinia_quinqueloba_RDA_Bayliss_8470_M Coccinia_racemiflora_I_van_Nek_536_WAG Coccinia_racemiflora_JJ_Bos_6590_WAG Coccinia_rehmannii_SS_Renner_and_A_Kocyan_2749_M Coccinia_rehmannii_ovifera_B_de_Winter_and_OA_Leistner_5598_M Coccinia_rehmannii_var_littoralis_LE_Codd_9620_M Coccinia_rehmannii_var_rehmannii_G_Woortman_217_M Coccinia_samburuensis_RB_and_AJ_Faden_4_948_WAG Coccinia_schliebenii_E_Westphal_and_JMC_Westphal_Stevels_5539_WAG Coccinia_schliebenii_G_Simon_Laizer_et_al_1449_MO Coccinia_senensis_AR_Torre_et_al_18788_MO Coccinia_senensis_CF_Paget_Wilkes_72_MO Coccinia_senensis_EMC_Groenendijk_et_al_1031_WAG Coccinia_senensis_J_Lovett_1597_MO Coccinia_senensis_K_Vollesen_MRC4316_WAG Coccinia_senensis_N_Holstein_et_al_66_M Coccinia_sessilifolia_SS_Renner_et_al_2763_M Coccinia_sp_nov_C_Geerling_and_J_Bokdam_662_MO 'Coccinia subsessiliflora H_Fredericq_in_Herb_de_Witte_8288_M' Coccinia_trilobata_N_Holstein_and_P_Sebastian_9_M Cucumis_hirsutus_NB_Zimba_et_al_872_MO Cucumis_sativus_AJ970307 Diplocyclos_palmatus_J_Maxwell_2_Sep_2002 Diplocyclos_schliebenii_HJ_Schlieben_4364_M Peponium_vogelii_SS_Renner_2710_M Scopellaria_marginata_A_Kocyan_AK178_BKF ; END; BEGIN TREES; TITLE Coccinia_cp_without_microsats_2; LINK TAXA = Taxa; TREE TREE3 = [&R] ((Scopellaria_marginata_A_Kocyan_AK178_BKF:0.011417606,(Cucumis_sativus_AJ970307:0.019522276,Cucumis_hirsutus_NB_Zimba_et_al_872_MO:0.008349131):0.0057791937):3.9880211E-7,Peponium_vogelii_SS_Renner_2710_M:0.005722076,((Diplocyclos_schliebenii_HJ_Schlieben_4364_M:0.0012830588,Diplocyclos_palmatus_J_Maxwell_2_Sep_2002:0.0021211796):0.010418931,((((((((Coccinia_barteri_E_Achigan_Dako_07_NIA_809_GAT:6.445687E-4,(Coccinia_barteri_WJJO_de_Wilde_et_al_3736_MO:0.0014037868,Coccinia_barteri_JJ_Wieringa_6387_WAG:4.44799E-4):3.9880211E-7):3.9880211E-7,'Coccinia subsessiliflora H_Fredericq_in_Herb_de_Witte_8288_M':0.0011583865):4.2315398E-4,(((Coccinia_barteri_MA_van_Bergen_490_WAG:6.405048E-4,Coccinia_barteri_E_Achigan_Dako_06_NIA_294_GAT:3.9880211E-7):3.9880211E-7,(Coccinia_barteri_FJ_Fernandez_Casas_12077_MO:0.0011402756,Coccinia_barteri_E_Achigan_Dako_07_NIA_899_GAT:3.9880211E-7):3.9880211E-7):3.9880211E-7,(Coccinia_racemiflora_JJ_Bos_6590_WAG:3.49111E-4,Coccinia_racemiflora_I_van_Nek_536_WAG:3.9880211E-7):3.434387E-4):7.0450077E-4):2.834191E-4,(((Coccinia_sp_nov_C_Geerling_and_J_Bokdam_662_MO:0.005622835,(Coccinia_keayana_FC_Straub_140_BR:3.9880211E-7,Coccinia_keayana_CCH_Jongkind_et_al_6542_WAG:3.9880211E-7):7.800473E-4):3.8717754E-4,Coccinia_longicarpa_CCH_Jongkind_3970_WAG:0.002039262):3.9661519E-4,Coccinia_heterophylla_CCH_Jongkind_5905_WAG:9.201602E-4):3.9880211E-7):2.6803827E-4,(Coccinia_mildbraedii_M_Reekmans_7399_BR:3.7024458E-4,Coccinia_mildbraedii_ulu_N_Holstein_et_al_76_M:3.9880211E-7):0.0021293072):0.0011057865,((Coccinia_mackenii_RG_Strey_3762_M:3.9880211E-7,Coccinia_quinqueloba_RDA_Bayliss_8470_M:3.9880211E-7):0.0010842375,(Coccinia_hirtella_SS_Renner_and_A_Kocyan_2747_M:3.2005712E-4,Coccinia_hirtella_N_Holstein_29_M:3.9880211E-7):0.0016722078):5.4433796E-4):2.2763117E-4,(((Coccinia_senensis_J_Lovett_1597_MO:3.9880211E-7,(Coccinia_senensis_CF_Paget_Wilkes_72_MO:3.9880211E-7,(Coccinia_senensis_EMC_Groenendijk_et_al_1031_WAG:3.9880211E-7,(Coccinia_senensis_AR_Torre_et_al_18788_MO:3.9880211E-7,(Coccinia_senensis_K_Vollesen_MRC4316_WAG:3.9880211E-7,Coccinia_senensis_N_Holstein_et_al_66_M:2.667579E-4):2.308843E-4):8.0327135E-7):2.9984907E-5):3.9880211E-7):3.9880211E-7,((((Coccinia_samburuensis_RB_and_AJ_Faden_4_948_WAG:0.0018481178,((((Coccinia_adoensis_M_Sanane_375_M:4.4343097E-4,Coccinia_adoensis_RE_Gereau_and_CJ_Kayombo_3582_MO:3.9880211E-7):6.726647E-4,(Coccinia_adoensis_R_Story_6283_M:3.9880211E-7,Coccinia_adoensis_EA_Robinson_2944_M:3.1508127E-4):4.8125826E-4):3.9880211E-7,(Coccinia_adoensis_AR_Torre_5337_M:3.9880211E-7,Coccinia_adoensis_J_Pawek_6124_MO:3.9880211E-7):4.7730957E-4):2.3406545E-4,((Coccinia_schliebenii_E_Westphal_and_JMC_Westphal_Stevels_5539_WAG:3.9880211E-7,Coccinia_schliebenii_G_Simon_Laizer_et_al_1449_MO:3.9880211E-7):5.1938544E-4,(Coccinia_grandiflora_N_Holstein_et_al_98_M:3.9880211E-7,Coccinia_grandiflora_H_Schaefer_05_302_M:2.4640904E-4):0.0011725671):4.5910326E-4):4.597593E-4):2.2870522E-4,((Coccinia_grandis_De_Wilde_22270_L:4.7446447E-4,(Coccinia_grandis_H_Schaefer_05_258_M:4.8648872E-4,Coccinia_grandis_R_Mueller_sn_Aug_1999_M:4.1096855E-4):3.9880211E-7):0.0025686554,Coccinia_ogadensis_Thulin_et_al_11183_UPS:0.0026436637):2.2353497E-4):3.9880211E-7,(Coccinia_adoensis_DK_Harder_and_MG_Bingham_2584_MO:5.8068417E-4,(Coccinia_adoensis_H_Merxmueller_282_M:3.9880211E-7,Coccinia_adoensis_LE_Davidson_3781_M:3.9880211E-7):0.002235798):8.324918E-4):4.5773754E-4,((Coccinia_aurantiaca_N_Holstein_et_al_86_fem_M:3.9880211E-7,Coccinia_aurantiaca_sp5_SA_Robertson_1925_MO:3.9880211E-7):3.9880211E-7,(Coccinia_aurantiaca_PJ_Greenway_and_Kanuri_14811_M:3.9880211E-7,Coccinia_aurantiaca_M_Richards_20987_BR:3.9880211E-7):5.4330484E-4):5.8537535E-4):3.8216577E-4):7.6986314E-4,Coccinia_sessilifolia_SS_Renner_et_al_2763_M:0.001883949):2.2655372E-4):3.9880211E-7,(((((Coccinia_rehmannii_SS_Renner_and_A_Kocyan_2749_M:0.0014061152,Coccinia_rehmannii_var_littoralis_LE_Codd_9620_M:3.99283E-4):3.9880211E-7,(Coccinia_rehmannii_var_rehmannii_G_Woortman_217_M:0.0011656573,Coccinia_rehmannii_ovifera_B_de_Winter_and_OA_Leistner_5598_M:2.8596693E-4):3.9880211E-7):2.3233161E-4,(Coccinia_microphylla_RB_Drummond_and_JH_Hemsley_4087_B:0.0014949886,Coccinia_trilobata_N_Holstein_and_P_Sebastian_9_M:0.0014836865):2.2721547E-4):3.9880211E-7,Coccinia_microphylla_JJFE_de_Wilde_and_MG_Gilbert_346_UPS:6.098942E-4):8.9099124E-4,((Coccinia_megarrhiza_I_Friis_et_al_2664_MO:0.0035397788,(Coccinia_megarrhiza_PCM_Jansen_3471_WAG:3.9880211E-7,(Coccinia_megarrhiza_JJFE_de_Wilde_4793_WAG:3.9880211E-7,Coccinia_megarrhiza_JJFE_de_Wilde_6501_WAG:3.9880211E-7):3.6355923E-4):3.5995423E-4):3.7007825E-4,(Coccinia_abyssinica_E_Westphal_and_JMC_Westphal_Stevels_1552_WAG:3.9880211E-7,Coccinia_abyssinica_E_Westphal_and_JMC_Westphal_Stevels_1951_WAG:3.9880211E-7):0.0017039796):6.7547755E-4):6.950312E-4):0.0036450392):0.001902311); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr50428] END;