#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 25, 2024; 1:14 GMT TreeBASE (cc) 1994-2008 Study reference: Cho S., Zwick A., Regier J., Mitter C., Cummings M.P., Yao J., Du Z., Zhao H., Kawahara A.Y., Weller S.J., Davis D.R., Baixeras J., Brown J.W., & Parr C. 2011. Can Deliberately Incomplete Gene Sample Augmentation Improve a Phylogeny Estimate for the Advanced Moths and Butterflies (Hexapoda: Lepidoptera)?. Systematic Biology, 60(6): 782–796. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S11299] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=123; TAXLABELS Acanthobrahmaea_europaea_AEURO Accinctapubes_albifasciata_ACAL Acraga_philetera_DSP Acropteris_sparsaria_ACRO Aethes_promptana_AESP Aidos_osorius_AIOS Alucita_sp_ALSP Amauta_cacica_AMCA Anacrusis_nephrodes_ANNE Antheraea_polyphemus_APOL2 Apatelodes_torrefacta_ATOR Apha_aequalis_AAEQ Apoda_biguttata_ABIG2 Archiearis_parthenias_APAR Argyrotaenia_alisellana_ARGA Artace_cribraria_ACRI Asterocampa_celtis_ACLY Astraptes_enotrus_AENO Atteva_punctella_ATPU2 Axia_margarita_AXSP Biston_betularia_BBET Bombyx_mori_BMOR1 Caloptilia_bimaculatella_CBIM Campaea_perlata_CPER Carthaea_saturnioides_TB032177 Catoptria_oregonica_CAOR Chelepteryx_collesi_CCOL Chlorosea_margaretaria_CMAR Cisseps_fulvicollis_CFU2 Clepsis_melaleucana_CRS Colias_eurytheme_CEUR Cyclidia_substigmaria_modesta_CYSU Cyclophora_sp_CYTR Cyclotorna_sp_CYSP Cydia_pomonella_CPO Dalcerides_ingenita_DING2 Dichromodes_sp_DICH Dinophalus_lechriomita_DLEC Discophlebia_sp_DISC Doa_sp_DOA Druentia_alsa_DALS Dysodia_sp_DYSO Emmelina_monodactyla_EMON Epiblema_abruptana_BASP Epicopeia_hainesii_EHAI Eterusia_aedea_ETSP Ethmia_eupostica_EEU Eucalantica_sp_YSP Euclea_delphinii_EDEL3 Euclemensia_bassettella_COLE Eudonia_spenceri_SCSP Eupithecia_acutipennis_EUAC Fulgoraecia_exigua_ESP2 Gauna_aegusalis_GAEG Gluphisia_septentrionis_GSEP Hemerophila_felis_HFEL Heteropacha_rileyana_HRIL Hopliocnema_brachycera_HBR Hyblaea_firmamentum_HYFM Hyles_lineata_HLIN Hypena_scabra_PSC2 Hypobapta_xenomorpha_HXEN Janiodes_laverna_nigripuncta_JCER Lacosoma_chiridota_LCH2 Lactura_subfervens_LSUB Lacturidae_Gen_sp_LACT Lagoa_crispata_LCR2 Lasiocampa_quercus_LQUERCUS Lymantria_dispar_LDI Lyssa_zampa_LZA Macrosoma_conifera_MCON Macrosoma_satellitiata_satellitiata_MSSA Macrotheca_sp_MACRO Macrothylacia_rubi_MRUBI Malacosoma_americanum_MAME2 Meganola_phylla_MMI1 Melittia_cucurbitae_MCUC2 Mesocondyla_dardusalis_PPY224 Micronoctua_karsholti_MKA Mimoides_branchus_MIBR Monoloxis_flavicinctalis_MFLA Olceclostera_seraphica_OSERA Oreta_rosea_OROS Orthonama_obstipata_ONST Pandemis_limitata_CNSP Papilio_glaucus_PGLA Pelochrista_zomonana_EUSP Pentina_flammans_PFLA Petrophila_confusalis_PCON Phaedropsis_alitemeralis_PPY122 Phiditia_sp_PBO Phyciodes_tharos_PTHA Pieris_rapae_PRAP Plagodis_fervidaria_PFER Platynota_idaeusalis_PIDA2 Plodia_interpunctella_PIN Podosesia_syringae_PSY2 Poecilocampa_populi_PPOP Pollanisus_sp_POSP Prionoxystus_robiniae_PROB2 Prismosticta_fenestrata_PFENE Pryeria_sinica_PSIN Pseudothyatira_cymatophoroides_PCYM Psychostrophia_melanargia_PMEL Pterodecta_felderi_PTFE Rhodoneura_terminalis_LTE Rupela_albina_PSH29 Scirpophaga_incertulas_SIN Scopula_limboundata_SCLI Sematura_luna_NOTHSP Sosineura_mimica_SMIM Spodoptera_frugiperda_SFR Synemon_plana_SPLA Syngria_druidaria_SDRU Tinea_columbariella_TCO2 Tineola_bisselliella_TBI3 Tolype_notialis_TNOT Trichoplusia_ni_TNI Trichopteryx_carpinata_TRCA Trogoptera_salvita_TSAV Urbanus_doryssus_UDO Urodus_decens_URSP Zeuzera_coffeae_ZCOF ; END; BEGIN TREES; TITLE '5-Gene Non Syn Complete ML'; LINK TAXA = Taxa; TREE 123tx5gn = [&R] ((Tineola_bisselliella_TBI3:0.09571948,Tinea_columbariella_TCO2:0.09027836):0.292231745,(Hemerophila_felis_HFEL:0.48176732,((Alucita_sp_ALSP:0.33047601,Urodus_decens_URSP:0.4310495):0.03750051,((Fulgoraecia_exigua_ESP2:0.60631571,(Caloptilia_bimaculatella_CBIM:0.44366952,(Atteva_punctella_ATPU2:0.5550595,Eucalantica_sp_YSP:0.37539115):0.07080654):0.04406101):0.05233768,((Emmelina_monodactyla_EMON:0.42509873,(Euclemensia_bassettella_COLE:0.37688907,Ethmia_eupostica_EEU:0.32507826):0.03850863):0.02299363,((Cyclotorna_sp_CYSP:0.6460548,((Cydia_pomonella_CPO:0.14327209,(Epiblema_abruptana_BASP:0.05620166,Pelochrista_zomonana_EUSP:0.03829679):0.07679008):0.09865333,(Aethes_promptana_AESP:0.24393062,((Platynota_idaeusalis_PIDA2:0.19548104,Anacrusis_nephrodes_ANNE:0.18155129):0.02519731,(Clepsis_melaleucana_CRS:0.07266991,(Argyrotaenia_alisellana_ARGA:0.0730238,Pandemis_limitata_CNSP:0.0751711):0.02468546):0.11655549):0.0257259):0.03194544):0.15104332):0.02044186,(((Zeuzera_coffeae_ZCOF:0.39892534,(Melittia_cucurbitae_MCUC2:0.38528396,Podosesia_syringae_PSY2:0.41212398):0.13490717):0.02371313,((Prionoxystus_robiniae_PROB2:0.30818425,(Amauta_cacica_AMCA:0.09029578,Synemon_plana_SPLA:0.12673101):0.17742017):0.038412,(((Lacturidae_Gen_sp_LACT:0.24644795,Lactura_subfervens_LSUB:0.42429009):0.02127116,(Pryeria_sinica_PSIN:0.47163461,(Eterusia_aedea_ETSP:0.3929296,Pollanisus_sp_POSP:0.45247344):0.09105287):0.06977177):0.01925251,((Lagoa_crispata_LCR2:0.33874675,Aidos_osorius_AIOS:0.31414274):0.11672552,((Apoda_biguttata_ABIG2:0.23729911,Euclea_delphinii_EDEL3:0.35696379):0.10454888,(Dalcerides_ingenita_DING2:0.19292529,Acraga_philetera_DSP:0.19994827):0.51993107):0.03915018):0.01319152):0.03672791):0.01095375):0.02292461,(((Sosineura_mimica_SMIM:0.39483429,Hyblaea_firmamentum_HYFM:0.2939804):0.04485566,(((Pterodecta_felderi_PTFE:0.46660315,(Mimoides_branchus_MIBR:0.31228344,Papilio_glaucus_PGLA:0.26447979):0.16559787):0.03771535,(Rhodoneura_terminalis_LTE:0.3407627,(Dysodia_sp_DYSO:0.31623593,Pentina_flammans_PFLA:0.29818908):0.03081768):0.06668433):0.01461839,(((Asterocampa_celtis_ACLY:0.30180811,Phyciodes_tharos_PTHA:0.29585823):0.14304185,(Colias_eurytheme_CEUR:0.25783114,Pieris_rapae_PRAP:0.3667853):0.17817064):0.04974798,((Astraptes_enotrus_AENO:0.08308079,Urbanus_doryssus_UDO:0.07660736):0.27871335,(Macrosoma_conifera_MCON:0.10340885,Macrosoma_satellitiata_satellitiata_MSSA:0.10596719):0.23844527):0.05020222):0.03469741):0.01448153):0.01604526,((((Macrotheca_sp_MACRO:0.40037343,Monoloxis_flavicinctalis_MFLA:0.26111978):0.04769419,(Plodia_interpunctella_PIN:0.35127819,(Accinctapubes_albifasciata_ACAL:0.33553915,Gauna_aegusalis_GAEG:0.28129982):0.0266241):0.03850618):0.04507864,((Phaedropsis_alitemeralis_PPY122:0.23898897,Mesocondyla_dardusalis_PPY224:0.16307952):0.11157145,((Catoptria_oregonica_CAOR:0.24381545,Eudonia_spenceri_SCSP:0.1909548):0.05260411,(Petrophila_confusalis_PCON:0.28986222,(Rupela_albina_PSH29:0.30952751,Scirpophaga_incertulas_SIN:0.35730787):0.05460223):0.0329129):0.06022263):0.06821425):0.02773066,(((Axia_margarita_AXSP:0.29751268,(Druentia_alsa_DALS:0.16526155,(Lacosoma_chiridota_LCH2:0.15064004,Trogoptera_salvita_TSAV:0.11496347):0.03821061):0.23505205):0.04618602,(Doa_sp_DOA:0.4748388,(Oreta_rosea_OROS:0.43290624,(Pseudothyatira_cymatophoroides_PCYM:0.24771117,Cyclidia_substigmaria_modesta_CYSU:0.31536548):0.04579779):0.02001059):0.01673193):0.01336915,((((Poecilocampa_populi_PPOP:0.1785671,(Artace_cribraria_ACRI:0.15000955,Tolype_notialis_TNOT:0.12609369):0.22006208):0.0261409,(Malacosoma_americanum_MAME2:0.24829286,(Heteropacha_rileyana_HRIL:0.1626148,(Lasiocampa_quercus_LQUERCUS:0.10761294,Macrothylacia_rubi_MRUBI:0.15063226):0.0288724):0.03953754):0.06577763):0.16174857,(((Apha_aequalis_AAEQ:0.37805824,Acanthobrahmaea_europaea_AEURO:0.27255465):0.03874399,(Apatelodes_torrefacta_ATOR:0.15392658,Olceclostera_seraphica_OSERA:0.1450132):0.23932105):0.04022351,(((Chelepteryx_collesi_CCOL:0.27870928,Carthaea_saturnioides_TB032177:0.16921155):0.02367564,(Phiditia_sp_PBO:0.25616894,Prismosticta_fenestrata_PFENE:0.18717567):0.03034179):0.04584674,((Antheraea_polyphemus_APOL2:0.25923664,Janiodes_laverna_nigripuncta_JCER:0.2127806):0.15490023,(Bombyx_mori_BMOR1:0.39985322,(Hopliocnema_brachycera_HBR:0.21923505,Hyles_lineata_HLIN:0.15085676):0.10686688):0.03425209):0.02209424):0.0140122):0.02175506):0.03229849,((Discophlebia_sp_DISC:0.27123811,(Gluphisia_septentrionis_GSEP:0.2799339,((Meganola_phylla_MMI1:0.37630716,(Spodoptera_frugiperda_SFR:0.20182278,Trichoplusia_ni_TNI:0.21481124):0.07328311):0.02133829,(Hypena_scabra_PSC2:0.21536581,(Micronoctua_karsholti_MKA:0.30009394,(Lymantria_dispar_LDI:0.32485857,Cisseps_fulvicollis_CFU2:0.24418419):0.04156653):0.04231305):0.06449684):0.03270775):0.02595791):0.0385269,((Sematura_luna_NOTHSP:0.37495996,(Epicopeia_hainesii_EHAI:0.20694164,Psychostrophia_melanargia_PMEL:0.14033736):0.08417292):0.03901351,((Syngria_druidaria_SDRU:0.26584513,(Acropteris_sparsaria_ACRO:0.2222,Lyssa_zampa_LZA:0.24554953):0.07645698):0.05899566,((Scopula_limboundata_SCLI:0.32528218,(Cyclophora_sp_CYTR:0.24266976,(Trichopteryx_carpinata_TRCA:0.2245768,(Eupithecia_acutipennis_EUAC:0.27578694,Orthonama_obstipata_ONST:0.2049438):0.03532949):0.11862484):0.0283907):0.02915605,((Archiearis_parthenias_APAR:0.18665534,Dichromodes_sp_DICH:0.23394705):0.01849206,((Biston_betularia_BBET:0.30418505,(Campaea_perlata_CPER:0.2042114,Plagodis_fervidaria_PFER:0.22860561):0.02508007):0.03726824,(Dinophalus_lechriomita_DLEC:0.18468254,(Chlorosea_margaretaria_CMAR:0.21160856,Hypobapta_xenomorpha_HXEN:0.14178223):0.09417004):0.02033479):0.03038198):0.04072552):0.03744132):0.02581924):0.01461336):0.0128649):0.01568432):0.01277656):0.01890942):0.01148395):0.02539268):0.01906866):0.01681923):0.02441007):0.05337956):0.292231745); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr50485] END;