#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on April 18, 2024; 9:29 GMT

TreeBASE (cc) 1994-2008

Study reference:
Delsuc F., Tsagkogeorga G., Lartillot N., & Philippe H. 2008. Additional molecular
support for the new chordate phylogeny. genesis, 46: 592-604.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S12329]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=51;
        TAXLABELS
            Acropora_millepora
            Ambystoma_mexicanum
            Apis_mellifera
            Aplysia_californica
            Asterina_pectinifera
            Bombyx_mori
            Bos_taurus
            Branchiostoma_floridae
            Callorhinchus_milii
            Capitella_sp._2004
            Ciona_intestinalis
            Ciona_savignyi
            Crassostrea_virginica
            Cyanea_capillata
            Danio_rerio
            Daphnia_pulex
            Diplosoma_listerianum
            Eptatretus_burgeri
            Euprymna_scolopes
            Gallus_gallus
            Halocynthia_roretzi
            Helobdella_robusta
            Holothuria_glaberrima
            Hydra_magnipapillata
            Hydractinia_echinata
            Ixodes_scapularis
            Litopenaeus_vannamei
            Lottia_gigantea
            Lumbricus_rubellus
            Molgula_tectiformis
            Monodelphis_domestica
            Mytilus_galloprovincialis
            Nematostella_vectensis
            Oikopleura_dioica
            Oscarella_carmela
            Paracentrotus_lividus
            Pediculus_humanus
            Petromyzon_marinus
            Platynereis_dumerilii
            Reniera_sp.
            Rhipicephalus_microplus
            Saccoglossus_kowalevskii
            Solaster_stimpsonii
            Spadella_cephaloptera
            Squalus_acanthias
            Strongylocentrotus_purpuratus
            Suberites_domuncula
            Tetraodon_nigroviridis
            Tribolium_castaneum
            Xenopus_tropicalis
            Xenoturbella_bocki
            ;
END;

BEGIN TREES;
      TITLE Phylogenomic_Metazoa;
      LINK TAXA = Taxa;
      TREE Fig._2b = [&R] ((Oscarella_carmela:27642.0,(Reniera_sp.:14606.0,Suberites_domuncula:13250.0):25311.0):27772.5,(((Acropora_millepora:21003.0,Nematostella_vectensis:36345.0):30509.0,(Cyanea_capillata:6538.0,(Hydra_magnipapillata:16071.0,Hydractinia_echinata:18046.0):4735.0):57075.0):21300.0,((Branchiostoma_floridae:49456.0,((Oikopleura_dioica:111800.0,((Halocynthia_roretzi:22600.0,Molgula_tectiformis:25195.0):29258.0,(Diplosoma_listerianum:13246.0,(Ciona_intestinalis:15319.0,Ciona_savignyi:16459.0):5591.0):32286.0):29452.0):39434.0,((Eptatretus_burgeri:23665.0,Petromyzon_marinus:14389.0):26830.0,((Callorhinchus_milii:3686.0,Squalus_acanthias:3605.0):14828.0,((Danio_rerio:12014.0,Tetraodon_nigroviridis:17358.0):15611.0,((Ambystoma_mexicanum:13726.0,Xenopus_tropicalis:10869.0):9368.0,(Gallus_gallus:10541.0,(Bos_taurus:7169.0,Monodelphis_domestica:8412.0):8427.0):9203.0):9470.0):5942.0):15674.0):25363.0):20525.0):13885.0,((Xenoturbella_bocki:24442.0,(Saccoglossus_kowalevskii:39734.0,(Holothuria_glaberrima:10404.0,((Asterina_pectinifera:961.0,Solaster_stimpsonii:1448.0):18058.0,(Paracentrotus_lividus:8155.0,Strongylocentrotus_purpuratus:8906.0):18437.0):4050.0):34925.0):6986.0):22212.0,(Spadella_cephaloptera:21093.0,(((Ixodes_scapularis:14204.0,Rhipicephalus_microplus:15172.0):47363.0,(Litopenaeus_vannamei:35501.0,(Daphnia_pulex:54405.0,(Pediculus_humanus:48718.0,(Apis_mellifera:43694.0,(Bombyx_mori:49409.0,Tribolium_castaneum:36966.0):23067.0):21367.0):29664.0):9816.0):25123.0):25770.0,((Platynereis_dumerilii:13599.0,(Capitella_sp._2004:37251.0,(Helobdella_robusta:14787.0,Lumbricus_rubellus:14131.0):40603.0):6908.0):26226.0,(Euprymna_scolopes:31890.0,((Aplysia_californica:29151.0,Lottia_gigantea:31824.0):18485.0,(Crassostrea_virginica:11504.0,Mytilus_galloprovincialis:13548.0):18642.0):12445.0):22337.0):20668.0):3654.0):16684.0):11206.0):21665.0):27772.5);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr50676]


END;