#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 19, 2024; 6:32 GMT TreeBASE (cc) 1994-2008 Study reference: Dijoux L., Verbruggen H., Mattio L., Duong N., & Payri C.E. 2012. Diversity of Halimeda (Bryopsidales, Chlorophyta) in New Caledonia: a combined morphological and molecular study. Journal of Phycology, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S12336] BEGIN TAXA; TITLE Taxa2; DIMENSIONS NTAX=44; TAXLABELS Avrainvillea_lacerata 'Halimeda borneensis (morphotype B) IRD 5309 (NC)' 'Halimeda borneensis AM049955 (FP)' 'Halimeda copiosa EF667065 (Jam)' 'Halimeda cryptica EF667057 (Jam)' 'Halimeda cylindracea (morphotype A) IRD 5326 (NC)' 'Halimeda discoidea ( morphotype G) IRD 5306 (NC)' 'Halimeda discoidea (morphotype G) IRD 5303 (NC)' 'Halimeda discoidea (morphotype G) IRD 5305 (NC)' 'Halimeda discoidea (morphotype G) IRD 5307 (NC) a' 'Halimeda discoidea (morphotype G) IRD 5320 (NC)' 'Halimeda fragilis (morphotype D ) IRD 5318 (NC)' 'Halimeda fragilis EF667058 (Guam)' 'Halimeda gracilis (morphotype K) IRD 5312 (NC)' 'Halimeda gracilis AM049965 (FP)' 'Halimeda gracilis AY826365 (FP)' 'Halimeda gracilis FJ624727 (Phi)' 'Halimeda gracilis FJ624731 (Flo)' 'Halimeda heteromorpha (morphotype O) IRD 5330 (NC)' 'Halimeda kanaloana (morphotype P) IRD 5323 (NC) a' 'Halimeda lacrimosa FJ624730 (Bah)' 'Halimeda lacunalis ( morphotype F) IRD 5316 (NC)' 'Halimeda lacunalis (morphotype F) IRD 5317 (NC)' 'Halimeda macroloba (morphotype C) IRD 5304 (NC)' 'Halimeda macroloba (morphotype C) IRD 5308 (NC)' 'Halimeda macroloba AM049960 (Tanz)' 'Halimeda magnidisca FJ624536 (Aust)' 'Halimeda melanesica AM049961 (Phi)' 'Halimeda micronesica (morphotype E) IRD 4862 (Mal)' 'Halimeda minima (morphotype L) IRD 5299 (NC)' 'Halimeda minima (morphotype L) IRD 5351 (NC)' 'Halimeda minima FJ624669 (Guam)' 'Halimeda pygmaea EF667062 (Fiji)' 'Halimeda renschii FJ624691(Tanz)' 'Halimeda simulans AM049963 (Jam)' 'Halimeda sp. (morphotype D) IRD 5300 (NC)' 'Halimeda sp.(morphotype D) IRD 5319 (NC)' 'Halimeda taenicola (morphotype J) IRD 4861 (Mal)a' 'Halimeda taenicola (morphotype J) IRD 5313 (NC)' 'Halimeda taenicola (morphotype J) IRD 5314 (NC)' 'Halimeda taenicola (morphotype J) IRD 5315 (NC)' 'Halimeda velasquezii (morphotype R) IRD 5296 (NC)' 'Halimeda velasquezii FJ624698 (Phi)' 'Halimeda xishaensis (morphotype Q) IRD 4867 (Mal)' ; END; BEGIN TREES; TITLE Halimeda_in_New_Caledonia; LINK TAXA = Taxa2; TREE ML100 = [&R] (Avrainvillea_lacerata:0.1324095,(('Halimeda micronesica (morphotype E) IRD 4862 (Mal)':0.042134,(('Halimeda fragilis EF667058 (Guam)':0.001541,'Halimeda fragilis (morphotype D ) IRD 5318 (NC)':0.01097)100:0.02616,('Halimeda cryptica EF667057 (Jam)':0.026589,('Halimeda pygmaea EF667062 (Fiji)':0.037416,('Halimeda sp.(morphotype D) IRD 5319 (NC)':0.007619,'Halimeda sp. (morphotype D) IRD 5300 (NC)':0.006945)100:0.018934)75:0.007638)95:0.01735)76:0.013075)53:0.011331,((('Halimeda lacrimosa FJ624730 (Bah)':0.025749,('Halimeda gracilis FJ624731 (Flo)':0.017991,('Halimeda gracilis FJ624727 (Phi)':0.033454,('Halimeda gracilis AM049965 (FP)':0.009552,'Halimeda gracilis (morphotype K) IRD 5312 (NC)':0.009436)60:0.007379)88:0.009042)52:0.006341)100:0.035983,('Halimeda copiosa EF667065 (Jam)':0.036002,('Halimeda minima FJ624669 (Guam)':0.024431,(('Halimeda velasquezii FJ624698 (Phi)':0.0,'Halimeda velasquezii (morphotype R) IRD 5296 (NC)':0.00148)99:0.013317,('Halimeda renschii FJ624691(Tanz)':0.008255,('Halimeda minima (morphotype L) IRD 5299 (NC)':0.0,'Halimeda minima (morphotype L) IRD 5351 (NC)':0.0)100:0.00602)75:0.004297)70:0.010832)83:0.015263)87:0.013006)33:0.003438,(('Halimeda simulans AM049963 (Jam)':0.024214,(('Halimeda melanesica AM049961 (Phi)':0.006187,('Halimeda borneensis AM049955 (FP)':0.0,'Halimeda borneensis (morphotype B) IRD 5309 (NC)':0.001468)100:0.005055)96:0.005105,('Halimeda cylindracea (morphotype A) IRD 5326 (NC)':0.012373,('Halimeda heteromorpha (morphotype O) IRD 5330 (NC)':0.003669,('Halimeda kanaloana (morphotype P) IRD 5323 (NC) a':0.002201,('Halimeda macroloba AM049960 (Tanz)':7.31E-4,('Halimeda macroloba (morphotype C) IRD 5308 (NC)':0.0,'Halimeda macroloba (morphotype C) IRD 5304 (NC)':0.0)96:0.0)95:0.002195)49:0.0)100:0.006259)57:0.002407)90:0.021342)98:0.02766,(('Halimeda lacunalis ( morphotype F) IRD 5316 (NC)':0.0,'Halimeda lacunalis (morphotype F) IRD 5317 (NC)':0.003805)100:0.050998,('Halimeda magnidisca FJ624536 (Aust)':0.024325,((('Halimeda discoidea (morphotype G) IRD 5320 (NC)':7.42E-4,'Halimeda discoidea (morphotype G) IRD 5303 (NC)':0.0)100:0.00279,('Halimeda discoidea (morphotype G) IRD 5307 (NC) a':0.001469,('Halimeda discoidea (morphotype G) IRD 5305 (NC)':0.0,'Halimeda discoidea ( morphotype G) IRD 5306 (NC)':0.0)100:7.33E-4)98:0.003195)100:0.023448,('Halimeda xishaensis (morphotype Q) IRD 4867 (Mal)':0.064751,('Halimeda taenicola (morphotype J) IRD 4861 (Mal)a':0.045436,('Halimeda gracilis AY826365 (FP)':0.004625,('Halimeda taenicola (morphotype J) IRD 5313 (NC)':0.0,('Halimeda taenicola (morphotype J) IRD 5314 (NC)':0.0,'Halimeda taenicola (morphotype J) IRD 5315 (NC)':0.0)99:0.0)100:0.021722)54:0.003411)100:0.010531)25:0.010113)31:0.014405)46:0.020633)91:0.02827)51:0.008504)31:0.01072):0.1324095); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr50743] END;