#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 19, 2024; 6:37 GMT

TreeBASE (cc) 1994-2008

Study reference:
Dijoux L., Verbruggen H., Mattio L., Duong N., & Payri C.E. 2012. Diversity of Halimeda
(Bryopsidales, Chlorophyta) in New Caledonia: a combined morphological and
molecular study. Journal of Phycology, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S12336]

BEGIN TAXA;
        TITLE  Taxa2;
        DIMENSIONS NTAX=31;
        TAXLABELS
            'Halimeda borneensis (morphotype B) IRD 5309 (NC)'
            'Halimeda borneensis (morphotype B) IRD 5310 (NC)'
            'Halimeda borneensis AM049955 (FP)'
            'Halimeda borneensis CP08 1081 (FP)'
            'Halimeda borneensis CP08 1157 (FP)'
            'Halimeda borneensis CP08 886 (FP)'
            'Halimeda borneensis CP08 908 (FP)'
            'Halimeda cylindracea (morphotype A) IRD 5325 (NC)'
            'Halimeda cylindracea (morphotype A) IRD 5326 (NC)'
            'Halimeda cylindracea AM049956 (Ye)'
            'Halimeda heteromorpha (morphotype O) IRD 5330 (NC)'
            'Halimeda heteromorpha (morphotype O) IRD 5346 (FP)'
            'Halimeda heteromorpha AM049957 (FP)'
            'Halimeda heteromorpha CP08 518 (FP)'
            'Halimeda heteromorpha FJ624535 (Phi)'
            'Halimeda incrassata AM049958 (Bah)'
            'Halimeda incrassata FJ624534 (Car)'
            'Halimeda kanaloana (morphotype P) IRD 5323 (NC) '
            'Halimeda kanaloana (morphotype P) IRD 5324 (NC)'
            'Halimeda kanaloana AM049959 (H)'
            'Halimeda macroloba (morphotype C) IRD 5304 (NC)'
            'Halimeda macroloba (morphotype C) IRD 5308 (NC)'
            'Halimeda macroloba (morphotype C) IRD 5321 (NC)'
            'Halimeda macroloba (morphotype C) IRD 5322 (NC)'
            'Halimeda macroloba AM049960 (Tanz)'
            'Halimeda melanesica (morphotype T) IRD 5810 (NC)'
            'Halimeda melanesica AM049961 (Phi)'
            'Halimeda micronesica AM049964 (Wa)'
            'Halimeda monile AM049962 (Pan)'
            'Halimeda simulans AM049963 (Jam)'
            'Halimeda sp. IRD 5311 morphotype A (NC)'
            ;
END;

BEGIN TREES;
      TITLE Halimeda_in_New_Caledonia;
      LINK TAXA = Taxa2;
      TREE L1_MP1000 = [&R] ((((((((('Halimeda heteromorpha AM049957 (FP)':0.0,'Halimeda heteromorpha (morphotype O) IRD 5330 (NC)':1.0)0.10:0.0,'Halimeda heteromorpha (morphotype O) IRD 5346 (FP)':0.0)0.09:0.0,'Halimeda heteromorpha CP08 518 (FP)':0.0)0.19:0.0,'Halimeda heteromorpha FJ624535 (Phi)':1.0)0.95:3.0,('Halimeda macroloba (morphotype C) IRD 5304 (NC)':0.0,('Halimeda macroloba (morphotype C) IRD 5308 (NC)':0.0,('Halimeda macroloba AM049960 (Tanz)':0.0,('Halimeda macroloba (morphotype C) IRD 5322 (NC)':0.0,'Halimeda macroloba (morphotype C) IRD 5321 (NC)':0.0)0.10:0.0)0.09:0.0)0.19:0.0)0.85:2.0)0.22:1.0,'Halimeda kanaloana AM049959 (H)':2.0)0.03:0.0,('Halimeda kanaloana (morphotype P) IRD 5324 (NC)':0.0,'Halimeda kanaloana (morphotype P) IRD 5323 (NC) ':0.0)0.75:1.0)0.82:4.25,((('Halimeda cylindracea (morphotype A) IRD 5326 (NC)':0.0,'Halimeda cylindracea (morphotype A) IRD 5325 (NC)':0.0)0.33:0.0,'Halimeda cylindracea AM049956 (Ye)':0.0)1.00:8.75,(('Halimeda melanesica AM049961 (Phi)':0.0,'Halimeda melanesica (morphotype T) IRD 5810 (NC)'):1.0)0.96:2.5,(('Halimeda borneensis (morphotype B) IRD 5309 (NC)':0.0,'Halimeda borneensis (morphotype B) IRD 5310 (NC)':0.0)0.77:2.0,('Halimeda borneensis CP08 908 (FP)':0.0,('Halimeda borneensis CP08 1157 (FP)':0.0,('Halimeda borneensis CP08 1081 (FP)':0.0,('Halimeda borneensis CP08 886 (FP)':0.0,'Halimeda borneensis AM049955 (FP)':0.0)0.09:0.0)0.07:0.0)0.10:0.0)0.29:0.0)0.85:5.5)0.64:5.75)0.11:3.0)0.16;
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr50748]


END;