#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 19, 2024; 4:45 GMT

TreeBASE (cc) 1994-2008

Study reference:
Dijoux L., Verbruggen H., Mattio L., Duong N., & Payri C.E. 2012. Diversity of Halimeda
(Bryopsidales, Chlorophyta) in New Caledonia: a combined morphological and
molecular study. Journal of Phycology, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S12336]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=27;
        TAXLABELS
            'Halimeda cryptica EF667056 (Jam)'
            'Halimeda cryptica EF667057 (Jam)'
            'Halimeda cryptica HV958 XX (Jam)'
            'Halimeda distorta FJ624644 (Wa)'
            'Halimeda fragilis (morphotype D) IRD 4874 (Mal)'
            'Halimeda fragilis (morphotype D) IRD 4916 (Mal)'
            'Halimeda fragilis (morphotype D) IRD 4917 (Mal)'
            'Halimeda fragilis (morphotype D) IRD 5318 (Chest-NC)'
            'Halimeda fragilis1 EF667058 (Guam)'
            'Halimeda fragilis1 FJ624640 (NM)'
            'Halimeda fragilis2  FJ624641 (Phi)'
            'Halimeda fragilis2 FJ624642 (Tanz)'
            'Halimeda fragilis2 HV1816 XX (Mal)'
            'Halimeda fragilis2 HV1828 XX (Mal)'
            'Halimeda fragilis2 ODC1772 XX (Phi)'
            'Halimeda micronesica (morphotype E) IRD 4862 (Mal)'
            'Halimeda micronesica AM049964 (Wal)'
            'Halimeda micronesica EF667059 (Wa)'
            'Halimeda micronesica EF667060 (Aust)'
            'Halimeda micronesica EF667061 (Fiji)'
            'Halimeda micronesica H0011 XX (Aust)'
            'Halimeda micronesica H0025 XX (Aust)'
            'Halimeda micronesica H0083 XX (Cha)'
            'Halimeda micronesica H0084 XX (Cha)'
            'Halimeda pygmaea EF667062 (Fiji).'
            'Halimeda sp. (morphotype D) IRD 5300 (NC)'
            'Halimeda sp. (morphotype D) IRD 5319 (Chest-NC)'
            ;
END;

BEGIN TREES;
      TITLE Halimeda_in_New_Caledonia;
      LINK TAXA = Taxa;
      TREE L2_ML100 = [&R] ('Halimeda distorta FJ624644 (Wa)':0.0363515,((('Halimeda fragilis (morphotype D) IRD 5318 (Chest-NC)':0.001298,('Halimeda fragilis1 FJ624640 (NM)':0.0,'Halimeda fragilis1 EF667058 (Guam)':0.001228)90:0.001294)100:0.027627,(('Halimeda micronesica EF667059 (Wa)':0.0,'Halimeda micronesica AM049964 (Wal)':0.0)93:0.001322,(('Halimeda micronesica EF667060 (Aust)':0.0,('Halimeda micronesica H0011 XX (Aust)':0.0,'Halimeda micronesica H0025 XX (Aust)':0.0)78:0.0)43:0.0,('Halimeda micronesica EF667061 (Fiji)':0.0,('Halimeda micronesica (morphotype E) IRD 4862 (Mal)':0.004963,('Halimeda micronesica H0083 XX (Cha)':0.0,'Halimeda micronesica H0084 XX (Cha)':0.0)93:0.00501)53:0.00247)38:0.001235)26:0.001154)100:0.036854)70:0.012474,((('Halimeda pygmaea EF667062 (Fiji).':0.049184,('Halimeda sp. (morphotype D) IRD 5300 (NC)':0.011292,'Halimeda sp. (morphotype D) IRD 5319 (Chest-NC)':0.008)100:0.016763)94:0.009444,('Halimeda cryptica EF667056 (Jam)':0.001099,('Halimeda cryptica HV958 XX (Jam)':0.0,'Halimeda cryptica EF667057 (Jam)':0.0)98:0.005143)97:0.031252)100:0.009785,('Halimeda fragilis2  FJ624641 (Phi)':0.0,('Halimeda fragilis2 ODC1772 XX (Phi)':0.0,('Halimeda fragilis (morphotype D) IRD 4916 (Mal)':0.0,('Halimeda fragilis2 FJ624642 (Tanz)':0.00125,('Halimeda fragilis2 HV1816 XX (Mal)':0.0,('Halimeda fragilis (morphotype D) IRD 4917 (Mal)':0.0,('Halimeda fragilis (morphotype D) IRD 4874 (Mal)':0.001251,'Halimeda fragilis2 HV1828 XX (Mal)':0.001252)8:0.0)4:0.0)11:0.0)45:0.0)47:0.001797)68:0.002325)100:0.016193)83:0.015224)97:0.0363515);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr50751]


END;