#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 19, 2024; 7:00 GMT TreeBASE (cc) 1994-2008 Study reference: Dijoux L., Verbruggen H., Mattio L., Duong N., & Payri C.E. 2012. Diversity of Halimeda (Bryopsidales, Chlorophyta) in New Caledonia: a combined morphological and molecular study. Journal of Phycology, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S12336] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=86; TAXLABELS 'Halimeda cuneata AY826353 (Sth Af)' 'Halimeda cuneata AY826354 (Sth Af)' 'Halimeda cuneata AY826355 (W Aust)' 'Halimeda cuneata AY826356 (Ye)' 'Halimeda cuneata AY826358 (Bra)' 'Halimeda cuneata FJ624537 (SrL)' 'Halimeda cuneata FJ624538 (Aust)' 'Halimeda discoidea (morphotype G) IRD 5303 (NC)' 'Halimeda discoidea (morphotype G) IRD 5305 (NC)' 'Halimeda discoidea (morphotype G) IRD 5306 (NC)' 'Halimeda discoidea (morphotype G) IRD 5307 (NC)' 'Halimeda discoidea (morphotype G) IRD 5320 (Chest-NC)' 'Halimeda discoidea AY826359 (Oman)' 'Halimeda discoidea AY826360 (Ye)' 'Halimeda discoidea AY826361 (Can)' 'Halimeda discoidea AY826362 (Jam)' 'Halimeda discoidea CP08 413 (FP)' 'Halimeda discoidea CP08 454 (FP)' 'Halimeda discoidea CP08 786 (FP)' 'Halimeda discoidea G.195 XX (Indo)' 'Halimeda discoidea G.510 XX (Ha)' 'Halimeda discoidea G.644 XX (Thai)' 'Halimeda discoidea G.672 XX (CR)' 'Halimeda discoidea G.673 XX (CR)' 'Halimeda discoidea G.676 XX (CR)' 'Halimeda discoidea G.677 XX (CR)' 'Halimeda discoidea G.678 XX (CR)' 'Halimeda discoidea G.679 XX (Nic)' 'Halimeda discoidea G.683 XX (Nic)' 'Halimeda discoidea G.684 XX (Nic)' 'Halimeda discoidea G.686 XX (Nic)' 'Halimeda discoidea G.687 XX (Nic)' 'Halimeda discoidea HV495 XX (Jam)' 'Halimeda discoidea HV58 XX (FP)' 'Halimeda discoidea HV585 XX (Phi)' 'Halimeda discoidea ODC1525 XX (Ken)' 'Halimeda discoidea ODC1745 XX (Phi)' 'Halimeda discoideaG.681 XX (Nic)' 'Halimeda gigas (morphotype S ) IRD 4927 (Mal)' 'Halimeda gigas AY826364 (Guam) ' 'Halimeda gigas FJ624539 (Tanz)' 'Halimeda gigas G.752 XX (W Aust)' 'Halimeda gigas HV1820 XX (Mal)' 'Halimeda gigas HV769 XX (Phi)' 'Halimeda hummii AM049988 (Pan)' Halimeda_incrassata_AM049958 'Halimeda lacunalis (morphotype F) IRD 5302 (NC)' 'Halimeda lacunalis (morphotype F) IRD 5316 (Chest-NC)' 'Halimeda lacunalis (morphotype F) IRD 5317 (Chest-NC)' 'Halimeda lacunalis (morphotype F) IRD 5327 (NC)' 'Halimeda lacunalis AY826363 (Guam)' 'Halimeda macrophysa AM049989 (NC)' 'Halimeda macrophysa (morphotype H) IRD 5328 (NC)' 'Halimeda macrophysa HV822 XX (Phi)' 'Halimeda macrophysa Halimeda0024 XX (Aust)' 'Halimeda magnidisca (Halimeda0817 XX Queens. Aust)' 'Halimeda magnidisca (morphotype I ) IRD 5329 (NC)' 'Halimeda magnidisca FJ624536 (Aust)' 'Halimeda magnidisca Halimeda0814 XX (Queens. Aust)' 'Halimeda magnidisca Halimeda0816 XX (Queens. Aust)' 'Halimeda magnidisca Halimeda0819 XX (Queens. Aust)' 'Halimeda scabra FJ624540 (Bah)' 'Halimeda taenicola AY826365 (FP)' 'Halimeda taenicola CP08 458 (FP)' 'Halimeda taenicola (morphotype J) IRD 4860 (Mal)' 'Halimeda taenicola (morphotype J) IRD 4861 (Mal)' 'Halimeda taenicola (morphotype J) IRD 5313 (Chest-NC)' 'Halimeda taenicola (morphotype J) IRD 5314 (Chest-NC)' 'Halimeda taenicola (morphotype J) IRD 5315 (Chest-NC)' 'Halimeda taenicola AM049966 (FP)' 'Halimeda taenicola CP08 411 (FP)' 'Halimeda taenicola CP08 457 (FP)' 'Halimeda taenicola CP08 709 (FP)' 'Halimeda taenicola HV1813 XX (Mal)' 'Halimeda tuna AY826366 (It)' 'Halimeda tuna AY826367(Mex)' 'Halimeda xishaensis (morphotype Q) IRD 4867 (Mal)' 'Halimeda xishaensis (morphotype Q) IRD 4932 (Mal)' 'Halimeda xishaensis (morphotype Q) IRD 4933 (Mal)' 'Halimeda xishaensis AY826357 (Guam)' 'Halimeda xishaensis HV1814 XX (Mal)' 'Halimeda xishaensis HV33 XX (Tanz)' 'Halimeda xishaensis HV731 XX (Phi)' 'Halimeda xishaensis Halimeda0389 XX (Col)' 'Halimeda xishaensis ODC1564 XX (Ken)' 'Halimeda xishaensis TZ0188 XX (Tanz)' ; END; BEGIN TREES; TITLE Halimeda_in_New_Caledonia; LINK TAXA = Taxa; TREE L3_NJ1000 = [&R] (Halimeda_incrassata_AM049958:0.047922,((('Halimeda lacunalis AY826363 (Guam)':0.013515,(('Halimeda lacunalis (morphotype F) IRD 5316 (Chest-NC)':0.0,'Halimeda lacunalis (morphotype F) IRD 5317 (Chest-NC)':0.00667)59:0.0013,('Halimeda lacunalis (morphotype F) IRD 5302 (NC)':0.0,'Halimeda lacunalis (morphotype F) IRD 5327 (NC)':0.0)49:0.0)73:0.0)99:0.047768,(('Halimeda discoidea AY826362 (Jam)':0.027648,('Halimeda discoidea AY826361 (Can)':0.002804,'Halimeda discoidea HV495 XX (Jam)':0.007037)97:0.012868)100:0.044238,(('Halimeda cuneata AY826358 (Bra)':0.048775,'Halimeda tuna AY826366 (It)':0.079685)40:0.009781,('Halimeda hummii AM049988 (Pan)':0.01747,('Halimeda tuna AY826367(Mex)':0.005207,'Halimeda scabra FJ624540 (Bah)':0.001325)100:0.010896)100:0.033457)35:0.004135)55:0.012417)67:0.009227,(('Halimeda magnidisca (morphotype I ) IRD 5329 (NC)':6.27E-4,('Halimeda magnidisca Halimeda0819 XX (Queens. Aust)':0.0,('Halimeda magnidisca (Halimeda0817 XX Queens. Aust)':0.0,('Halimeda magnidisca Halimeda0816 XX (Queens. Aust)':0.0,('Halimeda magnidisca FJ624536 (Aust)':0.0,'Halimeda magnidisca Halimeda0814 XX (Queens. Aust)':0.0)26:0.0)23:0.0)22:0.0)100:0.007864)100:0.031953,(((('Halimeda taenicola (morphotype J) IRD 5314 (Chest-NC)':0.0,('Halimeda taenicola (morphotype J) IRD 5313 (Chest-NC)':0.0,'Halimeda taenicola (morphotype J) IRD 5315 (Chest-NC)':0.0)100:0.0)100:0.025604,(('Halimeda taenicola (morphotype J) IRD 4860 (Mal)':0.0,('Halimeda taenicola (morphotype J) IRD 4861 (Mal)':0.0,'Halimeda taenicola HV1813 XX (Mal)':0.0)60:0.0)39:0.001321,('Halimeda taenicola AM049966 (FP)':0.0,(('Halimeda taenicola CP08 709 (FP)':0.0,'Halimeda taenicola CP08 411 (FP)':0.0)11:0.0,('Halimeda taenicola CP08 457 (FP)':0.0,('Halimeda taenicola AY826365 (FP)':0.0,'Halimeda taenicola CP08 458 (FP)':0.0)69:0.0)45:0.0)36:0.0)69:0.0)71:0.004201)71:0.01548,(('Halimeda cuneata AY826354 (Sth Af)':0.066494,('Halimeda cuneata AY826355 (W Aust)':0.017609,('Halimeda cuneata FJ624538 (Aust)':0.02458,('Halimeda cuneata AY826356 (Ye)':0.002667,'Halimeda cuneata FJ624537 (SrL)':0.005255)88:0.011451)100:0.038261)68:0.010621)6:4.34E-4,(('Halimeda macrophysa Halimeda0024 XX (Aust)':0.0,('Halimeda macrophysa HV822 XX (Phi)':0.007152,('Halimeda macrophysa AM049989 (NC)':0.0,'Halimeda macrophysa (morphotype H) IRD 5328 (NC)':0.0)100:0.001338)86:0.002678)100:0.02267,(('Halimeda xishaensis TZ0188 XX (Tanz)':0.001428,('Halimeda xishaensis Halimeda0389 XX (Col)':0.002859,('Halimeda xishaensis ODC1564 XX (Ken)':0.0,'Halimeda xishaensis HV33 XX (Tanz)':0.0)93:0.002859)36:0.0)68:0.001418,('Halimeda xishaensis HV731 XX (Phi)':0.001432,('Halimeda xishaensis HV1814 XX (Mal)':0.0,('Halimeda xishaensis (morphotype Q) IRD 4933 (Mal)':0.178096,('Halimeda xishaensis (morphotype Q) IRD 4932 (Mal)':0.0,('Halimeda xishaensis AY826357 (Guam)':0.0,'Halimeda xishaensis (morphotype Q) IRD 4867 (Mal)':0.0)52:0.0)90:0.0)49:0.0)30:0.0)54:0.001608)77:0.02414)19:0.007794)16:0.004932)58:0.008518,('Halimeda cuneata AY826353 (Sth Af)':0.024586,((('Halimeda gigas AY826364 (Guam) ':0.0,'Halimeda gigas FJ624539 (Tanz)':0.0)100:0.0,('Halimeda gigas HV769 XX (Phi)':0.001456,('Halimeda gigas G.752 XX (W Aust)':0.001604,('Halimeda gigas (morphotype S ) IRD 4927 (Mal)':0.0,'Halimeda gigas HV1820 XX (Mal)':0.0)95:0.004042)36:0.0)89:0.004037)100:0.036683,('Halimeda discoidea AY826359 (Oman)':0.006365,(('Halimeda discoidea AY826360 (Ye)':0.001326,('Halimeda discoidea ODC1745 XX (Phi)':0.0,('Halimeda discoidea G.644 XX (Thai)':0.003438,('Halimeda discoidea (morphotype G) IRD 5320 (Chest-NC)':0.001328,('Halimeda discoidea (morphotype G) IRD 5303 (NC)':0.0,'Halimeda discoidea G.510 XX (Ha)':0.0)15:0.0)38:0.0)27:0.0)37:0.001328)62:0.0019,(('Halimeda discoidea (morphotype G) IRD 5306 (NC)':0.0,'Halimeda discoidea (morphotype G) IRD 5305 (NC)':0.0)91:0.001326,(('Halimeda discoidea G.195 XX (Indo)':0.0,('Halimeda discoidea HV585 XX (Phi)':0.001435,'Halimeda discoidea ODC1525 XX (Ken)':0.0)70:0.001437)65:0.0,(('Halimeda discoidea CP08 454 (FP)':0.0,('Halimeda discoidea CP08 786 (FP)':0.0,('Halimeda discoidea CP08 413 (FP)':0.0,'Halimeda discoidea HV58 XX (FP)':0.0)17:0.0)17:0.0)64:0.001254,('Halimeda discoidea (morphotype G) IRD 5307 (NC)':0.0,(('Halimeda discoidea G.676 XX (CR)':0.0,'Halimeda discoidea G.672 XX (CR)':0.0)33:0.0,('Halimeda discoidea G.673 XX (CR)':0.0,('Halimeda discoidea G.677 XX (CR)':0.0,('Halimeda discoidea G.678 XX (CR)':0.0,('Halimeda discoidea G.683 XX (Nic)':0.0,(('Halimeda discoidea G.686 XX (Nic)':0.0,'Halimeda discoidea G.684 XX (Nic)':0.0)28:0.0,('Halimeda discoidea G.679 XX (Nic)':0.0,('Halimeda discoidea G.687 XX (Nic)':0.0,'Halimeda discoideaG.681 XX (Nic)':0.0)4:0.0)1:0.0)9:0.0)11:0.0)22:0.0)65:7.16E-4)62:7.17E-4)63:0.0)63:1.13E-4)63:0.001281)46:0.0)92:0.006121)82:0.011954)77:0.011025)71:0.01163)77:0.013701)84:0.01616)93:0.020871):0.047922); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr50752] END;